LOC110507043 (LOC106603827)


Basic Information

Item Value
gene id LOC110507043
gene name LOC106603827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2936528 ~ 2940847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965790.1
tgtgtatgtgtgtgtgtgtgtgtgtgtgtatcactcaatgactgtctgttcttctgcttaCCGCTACAGTGTGGAACATGGTGGAGAGTACACAATGAAACCTGGGCttagaaaatATGTGTGTGATCTgacactggacccaaacacagtaaacagattcctctctctgtctgaggagaacagaaaggtgacaCGTAGGAAAGAGGAGCAGCTgtatcctgatcacccagagagatttgaggGCTGTGAacaggtgctgtgtagagagggtctgactgggcTCTGTTACTGTGAGGTAGAGTGGAGTGGGAGAAGGGTTGGCAtcggagtgacatataaaggaatcaacaggagaggagggggtgatgaCTGTTGTCTTGGATGGAATAACAAGTCCTGGAGTCTGTTCTGCTCTGACAACAGTTACTATGCCTGTCACAATAATATTACCACAACCATAGACGTCCACCCCTCCGGCtcccacagagtaggagtgtatctggactgctcagccggcactctgtccttctatagagcctcctctgacacactgacccacctgtACACATTCACCTCCACATTCACAGAGCCCCTCTATACAGGGTTTAGGGTTTGGGGTGATgactcctcagtgtccctgtaaaTAATAACCTGTAAATAACTACCATGTTAACagtgatccacacacacacacacattggacacatacacacacacagacacaaacactggacacacacgcacacaaacaggacacacacacacacaacataca

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965790.1 True 775 mRNA 0.48 2 2936528 2940847

Neighbor

gene id symbol gene type direction distance location
LOC110507328 LOC106580643 coding downstream 394244 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 471050 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 530310 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 764741 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 969877 1937827 ~ 1966651 (-)
LOC110507338 LOC106603753 coding upstream 5075 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 15793 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 296554 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 306963 3247810 ~ 3255113 (-)
LOC110507348 LOC106580655 coding upstream 341645 3282492 ~ 3308039 (-)
G2041914 NA non-coding downstream 1589 2934710 ~ 2934939 (-)
G2041912 NA non-coding downstream 3309 2932994 ~ 2933219 (-)
G2041908 NA non-coding downstream 8694 2927397 ~ 2927834 (-)
G2041907 NA non-coding downstream 9458 2926828 ~ 2927070 (-)
G2041902 NA non-coding downstream 17376 2918947 ~ 2919152 (-)
G2041920 NA non-coding upstream 26408 2967255 ~ 2967454 (-)
G2041966 NA non-coding upstream 38507 2979354 ~ 3031483 (-)
G2042207 gpr171 non-coding upstream 180988 3121835 ~ 3129456 (-)
G2042282 NA non-coding upstream 290039 3230886 ~ 3231240 (-)
G2042283 NA non-coding upstream 291218 3232065 ~ 3232276 (-)
G2041885 NA other downstream 37140 2898987 ~ 2899388 (-)
G2041883 NA other downstream 40137 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2165791 769005 ~ 776178 (-)
G2042608 NA other upstream 459732 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 598337 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1402752 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1438087 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1473218 4414065 ~ 4414423 (-)

Expression


Co-expression Network