LOC110507338 (LOC106603753)


Basic Information

Item Value
gene id LOC110507338
gene name LOC106603753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2945922 ~ 2956588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965782.1
gaggtgggcctTGCCTCTAAGATGAGTctctctgaggagagagaggaggggggccctgcctctaaaatgagtctctctggggagagagaggaaggaggccctgcctctaaaatgagtctctctggggaacaTGACACCAAAGCTAAGAGCCCAATcaagcaggagagaccagcctcccctgtacccagctgtgtgtccatgaagagtgacaAGTCTATGGCGCTACCTATATACTTTAGAGAGGGAGACCTTTCTACTGAACAAAGaaaccaacaggagagattagagtcagagattctcagtggtcagtcttcccagagtcatcaaaaagacctggcctccatattcagtatgctTGAAGAGAATATTATGACATTTGTGAAGAACGAGCTGAAGCTGTTCAAGAGGATTCTTAGTCCAGAACTCCCAGAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGATTCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctcTGAAGATCACACTGCACGTCCTGAGGAAGATGAACCAGGTGGAGCTTGCTGACACACTGGAGAACTATTCAGATGATCCTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGAAGTGTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACTAGAGACTGCAATCAAATGGAACGACATCTTCACACCCTTAACTGGACAAGACAAACTtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagtacattctggactgggctgaaggaaaagcaaatcaggatgtgcaatttttattttcattcccttttcgggagctgaatttgatgaaagagAACAAACACACTTTCATTGAACTTCTCAATCACTTCTCAATGGAAACCAAACAATCAGGAATCTCCCACTACAACAAGTAcaaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaagaacaaaatctgttgtgatgtcacagagtcaacctcagtggatgttctg

Function

NR:

description
protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965782.1 True 1194 mRNA 0.46 5 2945922 2956588

Neighbor

gene id symbol gene type direction distance location
LOC110507043 LOC106603827 coding downstream 5075 2936528 ~ 2940847 (-)
LOC110507328 LOC106580643 coding downstream 403638 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 480444 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 539704 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 774135 1977082 ~ 2171787 (-)
LOC118944748 NA coding upstream 52 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 280813 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 291222 3247810 ~ 3255113 (-)
LOC110507348 LOC106580655 coding upstream 325904 3282492 ~ 3308039 (-)
LOC110507349 LOC106580654 coding upstream 358497 3315085 ~ 3349977 (-)
G2041914 NA non-coding downstream 10983 2934710 ~ 2934939 (-)
G2041912 NA non-coding downstream 12703 2932994 ~ 2933219 (-)
G2041908 NA non-coding downstream 18088 2927397 ~ 2927834 (-)
G2041907 NA non-coding downstream 18852 2926828 ~ 2927070 (-)
G2041902 NA non-coding downstream 26770 2918947 ~ 2919152 (-)
G2041920 NA non-coding upstream 10667 2967255 ~ 2967454 (-)
G2041966 NA non-coding upstream 22766 2979354 ~ 3031483 (-)
G2042207 gpr171 non-coding upstream 165247 3121835 ~ 3129456 (-)
G2042282 NA non-coding upstream 274298 3230886 ~ 3231240 (-)
G2042283 NA non-coding upstream 275477 3232065 ~ 3232276 (-)
G2041885 NA other downstream 46534 2898987 ~ 2899388 (-)
G2041883 NA other downstream 49531 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2175185 769005 ~ 776178 (-)
G2042608 NA other upstream 443991 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 582596 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1387011 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1422346 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1457477 4414065 ~ 4414423 (-)

Expression


Co-expression Network