LOC110508036 (kcnab1)


Basic Information

Item Value
gene id LOC110508036
gene name kcnab1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40299870 ~ 40564401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964965.1
ACATTTTAACCAGGAGGACATTTTAACCAGGAGGACATTTTAACCAGGAGGACATTTTAACGAGGAGGACATTTTAACGAGGACATTTTAACACCAACAGAGCATTTCAACAAAAAATCAAGACATTTTTTAAGATTCTCACGGACCGTCTCTGTTTAATTTTTTGCAACTCTCTGTTCATTCACTTCTCTTGGACTCTCTGTCCTGTACATTTCTCTGAGAGTGTCAGTCGGTCCATCCAGCCCAGCAATGCAGGTGTCTATAGCATGTACGGACCCCCACATGAAACGTGGAAATGGGGACCACAAGAATACCTCCAGTCCGGGCAATGCAGCCCGGGCCAAGTTCAGAACTGTGGCCATCATAGCACGCAGCTTTGGGGCGTTCGCACCCCGACACCACATCTCCCTCAAAGAGTCCACGGGGAAACTGACCGGCATgaaatacaggaaCCTGGGGAAATCAGGACTTAGAGTGTCGTGCTTGGGACTGGgTACCTGGGTAACGTTTGGTGGTCAGATTACAGACGAGGTGGCTGAGCAACTGATGACCATGGCGTATGAGAGTGGAGTCAACCTGTTTGACACAGCGGAGGTGTACGCTGCTGGAAAAGCTGAAGTCATATTGGGTAACATCATCAAGAAGaaatgctggagacGATCAAGTCTGGTCATCACTACCAAGCTGTACTGGGGAGGAAAagcagagactgagagaggcCTTTCAAGGAAACACATTATTGAAGgtctgaAGGGCTCCCTCCAGAGGTTGCAGCTGGAATACGTAGACGTGGTCTTCGCAAACCGCCCCGACACCAACACACCCATGGAGGAGATTGTGAGAGCCATGACTTATGTGATCAACCAGGGGATGTCCATGTACTGGGGGACTTCTCGATGGACAGCCATGGAGATCATGgaggcGTACTCTGTGGCCAGACAGTTTAACCTTATCCCTCCGGTGTGTGAGCAGGCTGAGTACCATCTCTTCCAGAGGGAGAAGGTGGAGGTCCAGCTTCCAGAACTCTACCACAAGATAGGTGTTGGGGCGATGACGTGGTCTCCGCTGGCCTGTGGCATCATCACGGGGAAGTACCAGAACGGCATCCCAGAAACCTCCAGGGCATCCATGAAGtcgTATCAGTGGTTAAAGGAGAAGATAGTGAGTGAGGATGGGAGGAAACAGCAGGCGAAGCTGAAGGAGCTGGGACACATCGCTGAGAAGCTGGGCTGTACTCTCCCACAGCTGGccgtggCCTGGTGTTTGAGGAATGAAGGAGTGAGCTCAGTCCTCCTGGGATCCTCCAGTCCAGAGCAGCTAACAGAGAACCTGGGTTCCATACAGTTCCTTCCAAAAATGACGTCTCATGTGGTGTCGGACATCGATCACATCCTGGGGAACAAGCCGTACAGTAAGAAGGAGTATCGGTCCTAGACACCCAGGAGGAAGCAGAACCACTACTGTACAACCACTGTGGATCCAGTTCCACCAACCATCTGGGCTCAGCTTCCATGGGGTTTCAGCTCAGTCTAATCCCAGCCTAGTTCAGGCCTGCTCTGCTCAGCCCCAGCTTTCTTAGCCCAGTGTAACCAAGCTTAGTTCAGCCTAACCAAGCTCACCCTCTGCCTAGACCAGCTTTCAGTCCAGCTTTCAGCTCAGCTTACTCTTATCAGTAGATTCTCTGACTCCTGAGTTTATTAACCATGTAGATGCATGCTTCCCCTCTCTGGTGTGCCTGGACTTTCTCTTCATAAGCACAttatacaaaacaacacaaaaggGGGTTAATACTTAGAATATACCGTAAGCTTCTTCAACaattcattttgaaaacaaactcCTCTCTCCAGCCAGTCTACTGTATTTGACACTTGTTTGACCTTTGCAAAGCAGAGCACCCTGGGACATTAAGTTTCAGTGACAGGGGTTTGTTGTCTGCGAGGGGTAGACTGTGCATGTTGTCGCCCCCCTCTGGTCGTATAAGATACTGCTATGGaatatc
>XM_036964964.1
AGaggcgaaagagagagaaaggagaaaggagaaagaaagagatctGACAGACGGAAGACTATGGCGAATGAGTGatacattgagggagagagtcAAAAGAGAGTGAGTCCACCTGTTAGACAGAGGGAGTATTTATCTACCCTGAAGCTGCAGGAGCTGGACTGACCAGTTATTCAATAGACCGAGAGCTCTGAAACCTAAAACACCCTTACCCTCTGAACTCTGACCTTTTCACCCTTCTCTGGATCGGGGTGTGTGAGAGGTGAAGTCATGCTTGCAGCCCGCAGTAgtggaggaggggtgggaggtCACAACGGTCCCCCAGGACACAGAAAACACTCTGTAGCGTCGCTGAGCGGGAGCAGAGGCCACTGTAACGCTCAGGATGGCAGTAAGGATAGACGCAGTTCCACCCCAGGCCAGCAGGCTGCAGCACCACACAGAAGCAAGGCAGCACTGATTAGAGAGATGGAGACCCACTGGTATCTGAAGATGTGTGGACTTGCAAGGGGGGATTCTGTGGCTCAAAAGACAGGCATGCTGTACAggaaCCTGGGGAAATCAGGACTTAGAGTGTCGTGCTTGGGACTGGgTACCTGGGTAACGTTTGGTGGTCAGATTACAGACGAGGTGGCTGAGCAACTGATGACCATGGCGTATGAGAGTGGAGTCAACCTGTTTGACACAGCGGAGGTGTACGCTGCTGGAAAAGCTGAAGTCATATTGGGTAACATCATCAAGAAGaaatgctggagacGATCAAGTCTGGTCATCACTACCAAGCTGTACTGGGGAGGAAAagcagagactgagagaggcCTTTCAAGGAAACACATTATTGAAGgtctgaAGGGCTCCCTCCAGAGGTTGCAGCTGGAATACGTAGACGTGGTCTTCGCAAACCGCCCCGACACCAACACACCCATGGAGGAGATTGTGAGAGCCATGACTTATGTGATCAACCAGGGGATGTCCATGTACTGGGGGACTTCTCGATGGACAGCCATGGAGATCATGgaggcGTACTCTGTGGCCAGACAGTTTAACCTTATCCCTCCGGTGTGTGAGCAGGCTGAGTACCATCTCTTCCAGAGGGAGAAGGTGGAGGTCCAGCTTCCAGAACTCTACCACAAGATAGGTGTTGGGGCGATGACGTGGTCTCCGCTGGCCTGTGGCATCATCACGGGGAAGTACCAGAACGGCATCCCAGAAACCTCCAGGGCATCCATGAAGtcgTATCAGTGGTTAAAGGAGAAGATAGTGAGTGAGGATGGGAGGAAACAGCAGGCGAAGCTGAAGGAGCTGGGACACATCGCTGAGAAGCTGGGCTGTACTCTCCCACAGCTGGccgtggCCTGGTGTTTGAGGAATGAAGGAGTGAGCTCAGTCCTCCTGGGATCCTCCAGTCCAGAGCAGCTAACAGAGAACCTGGGTTCCATACAGTTCCTTCCAAAAATGACGTCTCATGTGGTGTCGGACATCGATCACATCCTGGGGAACAAGCCGTACAGTAAGAAGGAGTATCGGTCCTAGACACCCAGGAGGAAGCAGAACCACTACTGTACAACCACTGTGGATCCAGTTCCACCAACCATCTGGGCTCAGCTTCCATGGGGTTTCAGCTCAGTCTAATCCCAGCCTAGTTCAGGCCTGCTCTGCTCAGCCCCAGCTTTCTTAGCCCAGTGTAACCAAGCTTAGTTCAGCCTAACCAAGCTCACCCTCTGCCTAGACCAGCTTTCAGTCCAGCTTTCAGCTCAGCTTACTCTTATCAGTAGATTCTCTGACTCCTGAGTTTATTAACCATGTAGATGCATGCTTCCCCTCTCTGGTGTGCCTGGACTTTCTCTTCATAAGCACAttatacaaaacaacacaaaaggGGGTTAATACTTAGAATATACCGTAAGCTTCTTCAACaattcattttgaaaacaaactcCTCTCTCCAGCCAGTCTACTGTATTTGACACTTGTTTGACCTTTGCAAAGCAGAGCACCCTGGGACATTAAGTTTCAGTGACAGGGGTTTGTTGTCTGCGAGGGGTAGACTGTGCATGTTGTCGCCCCCCTCTGGTCGTATAAGATACTGCTATGGaatatc

Function

symbol description
kcnab1 Enables NADPH binding activity; potassium channel regulator activity; and protein domain specific binding activity. Involved in negative regulation of voltage-gated potassium channel activity. Located in cytosol. Is extrinsic component of cytoplasmic side of plasma membrane. Part of voltage-gated potassium channel complex. Implicated in temporal lobe epilepsy.

NR:

description
PREDICTED: voltage-gated potassium channel subunit beta-1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04882 KCNAB1; potassium voltage-gated channel Shaker-related subfamily A, beta member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964965.1 False 2002 mRNA 0.50 14 40299870 40511059
XM_036964964.1 True 2101 mRNA 0.51 14 40299870 40564401

Neighbor

gene id symbol gene type direction distance location
LOC110508035 tiparp coding downstream 48155 40223863 ~ 40251715 (-)
lekr1 LOC106581448 coding downstream 109456 39984103 ~ 40190414 (-)
LOC100136245 LOC106581444 coding downstream 324660 39963824 ~ 39975210 (-)
LOC110508030 LOC106581433 coding downstream 451738 39835004 ~ 39848132 (-)
LOC110508032 LOC106581440 coding downstream 525236 39754567 ~ 39774634 (-)
LOC110508039 LOC106581455 coding upstream 37072 40601473 ~ 40606847 (-)
LOC110508038 LOC106581456 coding upstream 58201 40620620 ~ 40654523 (-)
LOC110508043 LOC106581485 coding upstream 282873 40847274 ~ 40854050 (-)
LOC110507273 LOC106581487 coding upstream 313710 40878111 ~ 40883459 (-)
LOC110507274 LOC106581485 coding upstream 343961 40908362 ~ 40913641 (-)
G2082655 NA non-coding downstream 37602 40261935 ~ 40262268 (-)
G2082653 NA non-coding downstream 40520 40258544 ~ 40259350 (-)
G2082317 NA non-coding downstream 159028 40140548 ~ 40140842 (-)
G2082315 NA non-coding downstream 165479 40133934 ~ 40134391 (-)
G2082313 NA non-coding downstream 169484 40130065 ~ 40130386 (-)
G2082767 NA non-coding upstream 31382 40595783 ~ 40595985 (-)
G2082770 NA non-coding upstream 42888 40607289 ~ 40607509 (-)
G2082774 NA non-coding upstream 47823 40612224 ~ 40612465 (-)
G2082779 NA non-coding upstream 61787 40626188 ~ 40626585 (-)
G2082006 NA other downstream 626417 39672732 ~ 39681547 (-)
G2081616 NA other downstream 866172 39433278 ~ 39433698 (-)
G2081106 NA other downstream 1361925 38937211 ~ 38937945 (-)
G2080063 NA other downstream 2315189 37984225 ~ 37984681 (-)
LOC110508045 LOC106581475 other upstream 410308 40967894 ~ 40977862 (-)
G2083443 NA other upstream 859138 41423539 ~ 41424040 (-)
LOC118944786 LOC106581464 other upstream 1111850 41573411 ~ 41680789 (-)

Expression


Co-expression Network