LOC110508043 (LOC106581485)


Basic Information

Item Value
gene id LOC110508043
gene name LOC106581485
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40847274 ~ 40854050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588490.2
gagacagagtacAGCTATGAGGGTCAGGCAATATATTAACCTTTACTTATCTATAGTCATGATACTGAACTCCTCTTCTCTGAGCCTTCTATTGAACTACTCCTCTGCCTCGTCCACTTCCTCGTCCTGTCGTCTGCGGGAGCATTTCAGTCTGAATGGGATGTACCAGAAGGGTGATGTGATTCTGGGAGGCCTGTTTGAGGTCCACTACTTCACTGTGTTCCCTGAGCTATCTTTCACATCAGAACCCCAGCAGCTCTACTGTGAGGGTTTTACCAGTTTTGGTTTCCAGCAGGCCCAGACTATGGCGTTTGCTGTAGATGAGATCAACAGAAACCCTGACCTTCTGCCAAACATCACGCTCGGATACCAACTCTACGACAACTGCCAGAAGTTGGGCGTATCGCTCCGTGCTGCCATGTCATTGGCCAGTGGGACAGAGAAAGAGTTCTTTTTGGATGAGACTTGTTCTGGGTCGCCCCCGGTGCTAGGGATTGTGGGAGACCCAGGGTCTACACACTCCATCGCCATCTCCAGTGTCCTAGGGCTGTTCCGGGTTCCCATGGTGAGTCATTACGCCACGTGTTCCTGTCTGAGCGACCGGGGAAAATACCCATCCTTCTTCAGAACCATCCCCAGTGATTCCTTCCAGGTGCGAGCCATGATCCAGATCCTACGTCGGTTGGGTTGGACCTGGGTGGGATTGGTGTTCAGTGATGATGACTACGGAGTTCATGCTGCCCGGTCCTTCCACTCAAGCCTGGCCGAGTCAGGGGGCTGTGTGGCCTATTCCCAGGTCCTGCCCAAAGACAACCGCCCCACTGAGCTGCAGAGGATCGTGGGAGAGATCAAGAGCTCCTCTGCtcgtgtggtggtggtgttctcCGTCGAGGCCTACCTGCTCCCTCTGGTGGATGAGGTGGTGGTGCAGAATGTGAAGGGTCTCCAGTGGATTGCCAGTGAAgcctggtcctcctcctctgtgtttcACACCCCCCGTCTCATGCCCTACCTGGGGGGTACCCTGGGTATCGCCATCCGTCGTGGAGAGATACCCGGCCTCAGGGACTTCCTGCTTAGCATCCGCCCCAACGACCAACCTGACAATAACCCTGGAAACAACATGGTGAGACAGTTCTGGGAGGCTGTGTTTGGGTGCAGGTTGGAGCCCCCAGCAGGTTGGGTGGAGGCTGGGGGTGATGTATGTACAGGTCAGGAGGACCTGAGGGATGTGGAGACCAACTATGGGGACGTGTCTGAGCTCAGGCCGGAGTATAGCGCGTATAAGGCAGTGTACGCCCTGGCCCATGCCCTGCATGACCTTCTGCAGTGTGTGCCAGGGAGAGGACCTTTCAGTGGGCACAGCTGTGCCAGTCTAGAGAGACTGGAGCCCTGGcagCTGGTCCATTACCTGGAGAGGGTTAAGTTCACCACAGGGTTAGGTGATCGCGTTTCTTTCGATGACAACGGGGATGCCTTGGCCATCTATGACATCATGAACTGGGCGTGGCTCCAGGACGGGAGCGTTCAGGTGGAGAATGTGGGTGTGATGGACGAATCAGCCCCCGCAGGACAAGAGCTCACACTGGACGAGGACAGAATTTTTTGGAACTTTGAGTCAAAAAAGCCCCCACGATCAGTATGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACAACAGACTCGGCCAAGTGCTCGAGGTGTCCAGAGGACTTCTGGTCCAGCCCGGAGCGTGACCTCTGCATCCCTAAGAGGGTTGAGTTCCTCTCTTACCAGGAAGCACTGGGCATCTCCTTGATGACCGCCTCGTTGCTAGGAGCCCTCATCTGTGCAGTGGTCCTCGGAATCTTCACCCACTACCGGAACACGCCTGTTGTCAAGGCCAACAACTCTGAGCTCAGCTTCCTTCTTCTTCTGTCACTCAAACTCTGCTTCCTGTGCTCGCTGCTGTTCATTGGCCGGCCCCGGCTATGGACGTGTCAGCTGAGGCATGCAGCATTTGGTATCAGCTTTGTTCTCTGTGTCTCCTGTATACTGGTGAAGACAATGGTGGTGCTGGCTGTGTTCAGGACCTCTAAGCCTGGGGGGAAGGCAAGCCTGAAGTGGTTTGGTGCTGGGCAGCAGAGAGGAACAGTCCTGGTTCTCACCTCATTCCAGGCTGCTATCTGCACAGCCTGGCTGGTTTCAGCCTCTCCAACTCCACACAAAAACACGCGCTACCATAATGATAAGATTGTTTATGAGTGTGTGGTGGGGTCGGTAGCAGGGTTTGGAGCGTTGTTAGGCTACATCGGCCTCTTGGCGTTCCTTAGCTTCCTCTTGGCTTTCCTGGCAAGGAATCTTCCAGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGTATGCTGAATTTCTGTGCTGTCTGGATATCCTTCGTCCCTGCCTACATCAGCTCTCCTGGGAAGTATGCCGACGCTGTGGAGATATTCGCCATCTTAGCTTCCAGCTTTGGCATCCTGGTGGCGCTGTTCGGCCCAAAGTGTTACATCATCCTGCTGAGGCCAGAGAGGAACACCAAGAAGGCTCTGATGGGCCGGGCCTCAACCAAGACATAGGGAGAATCTTCGTTACCTTTCCTTGATtactcacatcctctctcctcgctTTCATCTCAAAACCAATTAGATTAGAAGGTTTGGAGGGGTGGGATATATAACCTTCTCATTCATTGAGTTTTgaaaaggagacagaggagagaggacacgagGAATCACGGAAAAgtaattgagattctcccatagGCTCAATACCATAACAGCAGTTTATAGTGGATTCCTCTTCTCGTCTTCTTCATGTCCTCTGTGCTGATCTGAAATATGAACACTAGGTGGGGGTACTGTGCCTGCTAGGGATTTGCTTCACATTCTGTCATGcaaagaaaggaaaggagaaatgTATAGTAACAGAGTTTGATGGTCTCAAATAGTTTGAAGTAGCTCCTTTTTGTTTTCACTTCTGTTTGTAGTTTGATGGCAATAAATGAAATCAAAGagattttattgttttgttagcaCTCTAGTGATGTgtgcatgtgccttttattgattATAATTATGATGTTCTGTGACTAAACATTATTTCCTTGGCCTGTTAAGTAGGCTTTGAATGTATTTAATTTGTCTGTGTGCGTGGCTTTAATATTCTATGGGATAGGTTATCCCCGATGAGTGGGTTTCTGCATCGAAAagatttcaatttcaatttaat

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588490.2 True 3317 mRNA 0.52 9 40847274 40854050

Neighbor

gene id symbol gene type direction distance location
LOC110508038 LOC106581456 coding downstream 192751 40620620 ~ 40654523 (-)
LOC110508039 LOC106581455 coding downstream 240427 40601473 ~ 40606847 (-)
LOC110508036 kcnab1 coding downstream 282873 40299870 ~ 40564401 (-)
LOC110508035 tiparp coding downstream 595559 40223863 ~ 40251715 (-)
lekr1 LOC106581448 coding downstream 656860 39984103 ~ 40190414 (-)
LOC110507273 LOC106581487 coding upstream 24061 40878111 ~ 40883459 (-)
LOC110507274 LOC106581485 coding upstream 54312 40908362 ~ 40913641 (-)
LOC110507275 LOC106581486 coding upstream 74337 40928387 ~ 40933600 (-)
LOC118944770 LOC106581475 coding upstream 90278 40944328 ~ 40952721 (-)
LOC110508046 LOC106581475 coding upstream 101793 40955843 ~ 40963116 (-)
G2082885 NA non-coding downstream 6246 40840572 ~ 40841028 (-)
G2082884 NA non-coding downstream 6741 40840187 ~ 40840533 (-)
G2082850 LOC106581453 non-coding downstream 79167 40765276 ~ 40768107 (-)
G2082799 NA non-coding downstream 141512 40677565 ~ 40705762 (-)
G2082784 NA non-coding downstream 174756 40671694 ~ 40672518 (-)
G2082944 NA non-coding upstream 6034 40860084 ~ 40867423 (-)
LOC110508045 LOC106581475 non-coding upstream 120084 40967894 ~ 40977862 (-)
G2083118 NA non-coding upstream 191609 41045659 ~ 41045898 (-)
G2083126 NA non-coding upstream 204582 41058632 ~ 41115832 (-)
G2083178 NA non-coding upstream 299968 41154018 ~ 41154490 (-)
G2082006 NA other downstream 1173821 39672732 ~ 39681547 (-)
G2081616 NA other downstream 1413576 39433278 ~ 39433698 (-)
G2081106 NA other downstream 1909329 38937211 ~ 38937945 (-)
G2083443 NA other upstream 569489 41423539 ~ 41424040 (-)
LOC118944786 LOC106581464 other upstream 822201 41573411 ~ 41680789 (-)
G2084740 LOC106613316 other upstream 1930577 42784627 ~ 42785035 (-)

Expression


Co-expression Network