LOC110507275 (LOC106581486)


Basic Information

Item Value
gene id LOC110507275
gene name LOC106581486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40928387 ~ 40933600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587159.2
cggggagagacagagtaCAGCTATGAGGGTCAGGCAATATATGAACCTTTACCTATCTATAGTCATGATACTGAACTCCTCATCTCTGAGCCTTCTATTGAACTACTCCTCTGCCTCGTCCACTTCCTCATCCTGTCGTCTGCGGGAGCATTTCAGTCTGAATGGAATGTACCAGAAGGGTGATGTGATTCTGGGAGGCCTGTTTGAGGTCCACTACTTCACTGTGTTCCCTGAGCTATCTTTCACATCAGAACCCCAGCAGCTCTACTGTGAGGGTTTTGACAGTTTTGGTTTCCAGCAGGCCCAGACTATGGCGTTTGCTGTAGATGAGATCAACAGAAACCCTGACCTTCTGCCAAACATCAAGCTCGGATACCAGCTCTACGACAACTGCCTGAAGCTGGGAGTATCGTTCCGTGCTGCCATGTCATTGGCCAGTGGGACACAGGAAGAGTTCCCATTGGATGAGAGTTGTTCTGGGTCACCCCCGGTGCTAGGGATTGTGGGAGACCCAGGGTCCACACACTCCATCGCCATCTCCAGTGTCCTAGGGCTGTTCCGGGTACCCATGGTGAGTCATTACGCCACGTGTTCCTGTCTGAGCGACCGGGGAAAATACCCATCCTTCTTCAGAACCATCCCCAGTGATTCCTTCCAGGTGCGAGCCATGATCCAGATCCTACGTCGGTTGGGTTGGACCTGGGTGGGACTTGTGTTCAGTGACGATGACTACGGATTTCACGCTGCCCGGTCCTTCCACTCAAGCTTGGCCGAGTCAGGGGGCTGTGTGGCCTATTCCCAGGTCCTGCCCAAAGACAACCGCCCCACTGAGCTGCAGAGGATCGTGGGAGAGATCAAGAGCTCCTCTGCtcgtgtggtggtggtgttctcCAACGAGGCCTACCTGCTCCCTCTGGTGGATGAGGTGGTGGTGCAGAATGTGAAGGGTCTCCAGTGGATCGCCAGTGAAgcctggtcctcctcctctgtgtttcACACCCCCCGTCTCATGCCCTACCTGGGGGGTACCCTGGGTATCACCATCCGTCGTGGAGAGATACCCGGCCTCAGGGACTTCCTGCTTAGCATCCGCCCCGACGACCAACCTGACAATAACCATGGAAACAACATGGTGAGACAGTTCTGGGAGGCTGTGTTTGGGTGCAGGTTGGAGCCCCCAGCAGGTTGGGTGGAGGCTGGGGGTGATGTATGTACAGGTCAGGAGGACCTGAGGGATGTGGAGACCAGCTATGGGGACGTGTCTGAGCTTAGGCCGGAGTATAACGTGTATAAGGCAGTGTACGCCCTGGCCCATGCCCTGCATGACCTACTGCAGTGTGTGCCAGGGAGAGGACCATTCAGTGGGAACCGCTGTGCCAGCCTACAGAGACTGGAGCACTGGCAGCTGGTCCATTACCTGGAGAGGGTTAACTTCACCACAGGGTTTGGCGATCGCGTTTCTTTCGATGACAACGGGGACGCCTTGGCCATCTATGACATCATGAACTGGGCGTGGCTCCAGGACGGGAGCGTTCAGGTGGAGAATGTGGGTGTGATCGACGAATCAGCCCCCGCAGGACAAGAGCTCACACTGGACGAGGACAGAATTTTCTGGAACTTTGAGTCAAAAAAGCCTCCACGATCAGTGTGCAGTGAGAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGACTGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGaCTCGGCCGAGTGCTCGAGATGTCCAGAGGACTTCTGGTCCAGCCCGGAGCGTGACCTCTGCATCCCTAAGGGGGTTGAGTTCCTCTCCTACCAGGAATCGCTGGGCATCTCCTTGATGACCGCCTCGTTGCTAGGAGCCCTCATCTGTGCAGTGGTCCTCGGAATCTTCACCCGCTACCGGAACACACCTGTTGTCAAGGCCAACAACTCTGAGCTGAGCTTCCTGCTTCTGCTTTCACTCAAACTCTGCTTCCTGTGCTCGCTGCTGTTCATTGGCCGGCCCCGGCTATGGACGTGTCAGCTGAGACATGCAGCATTTGGTATCAGctttgttctctgtgtctcttgTATACTGGTGAAGACAATGGTGGTGCTGGCTGTGTTTAGGACCTCTAAGCCCGGGGGCAATGCCAGCCTGAAGTGGTTTGGTGCTGGGCAGCAGAGAGGAACAGTCCTGGTTCTCACCTCATTCCAGGCTGCTATCTGCACAGCCTGGCTGGTTTCAGCCTCTCCAACTCCACACAAAAACATGCGCTACCATATTGATAAGATTGTATATGAGTGTGTGGTGGGGTCGGTAGCAGGGTTCGGAGCGTTGTTAGGCTACATCGGCATCCTGGCGTTCCTTAGCTTCCTCTTGGCTTTCCTGGCTAGGAATCTTCCAGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTTTGGATCTCTTTCGTCCCTGCCTACATTAGCTCTCCTGGGAAGTATGCAGACGCTGTGGAGATATTCGCCATCTTAGCATCCAGCTTTGGCCTCCTGGTGGCTCTGTTCGGCCCAAAGTGTTACATCATCCTGCTGAGGCCAGAGAGGAACACCAAGAAGGCTCTGATGGGCCGGCCCACAACCAAGAGATAGGGAAGGTCTTCATtcaatttctttccttaatgtcctctctcctcaccttcttctcaaaacccattagaTGAGAAGGTTTGGAGGGGTGGGATATCTAACCTTCTCATTCATTGGGTTTTgaaaaggagacagaggagagaggacacgagGAATCACAGAAATTACATTGAGATTCTCCCATAGGCTCAATAACATAACAACAGTTTACAGTGGATTCCTCTCCTTGTCTTCTACACGTCCTCTGCGCTGATCTGAAATATGAACACTAGGTGGAGGTACTATGCACGCTAGGGATTTGCTTCACATTCTGTCATGcaaagaaaggaaaggagaaatgTATAGTAACAGAGTTTGATGGTCTCAAATAGTTTAAAGTAGCTCCTTTTAGTTTCCACTTCTGTTTGAACTTTGGTgactataaatcaaatcaaatcaaatagattttattgttttgttagcaCTCTAGTGATGTGTAGTAGCATGTTATTGATTATAATTTAACGTTCTGCAAGATGTTGTGTAAATATTAATCACataataaattatttatttcCTTG

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587159.2 True 3228 mRNA 0.52 9 40928387 40933600

Neighbor

gene id symbol gene type direction distance location
LOC110507274 LOC106581485 coding downstream 14746 40908362 ~ 40913641 (-)
LOC110507273 LOC106581487 coding downstream 44928 40878111 ~ 40883459 (-)
LOC110508043 LOC106581485 coding downstream 74337 40847274 ~ 40854050 (-)
LOC110508038 LOC106581456 coding downstream 273864 40620620 ~ 40654523 (-)
LOC110508039 LOC106581455 coding downstream 321540 40601473 ~ 40606847 (-)
LOC118944770 LOC106581475 coding upstream 10728 40944328 ~ 40952721 (-)
LOC110508046 LOC106581475 coding upstream 22243 40955843 ~ 40963116 (-)
LOC110508045 LOC106581475 coding upstream 34294 40967894 ~ 40977862 (-)
LOC110507227 LOC106581475 coding upstream 49190 40982790 ~ 40990771 (-)
LOC110507228 LOC106581473 coding upstream 74839 41008439 ~ 41012482 (-)
G2082938 NA non-coding downstream 50437 40846265 ~ 40877950 (-)
G2082944 NA non-coding downstream 60964 40860084 ~ 40867423 (-)
G2082885 NA non-coding downstream 87359 40840572 ~ 40841028 (-)
G2082884 NA non-coding downstream 87854 40840187 ~ 40840533 (-)
G2082850 LOC106581453 non-coding downstream 160280 40765276 ~ 40768107 (-)
G2083118 NA non-coding upstream 112059 41045659 ~ 41045898 (-)
G2083126 NA non-coding upstream 125032 41058632 ~ 41115832 (-)
G2083178 NA non-coding upstream 220418 41154018 ~ 41154490 (-)
G2083189 NA non-coding upstream 236540 41170140 ~ 41170468 (-)
lekr1 LOC106581448 other downstream 740822 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1254934 39672732 ~ 39681547 (-)
G2081616 NA other downstream 1494689 39433278 ~ 39433698 (-)
G2083443 NA other upstream 489939 41423539 ~ 41424040 (-)
LOC118944786 LOC106581464 other upstream 742651 41573411 ~ 41680789 (-)
G2084740 LOC106613316 other upstream 1851027 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2978560 43912160 ~ 43912680 (-)

Expression


Co-expression Network