LOC110508053 (LOC106581466)


Basic Information

Item Value
gene id LOC110508053
gene name LOC106581466
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41242573 ~ 41247822 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965618.1
TCTGCAAGTTCTTGGTTTGGTCTCTCTCCAACAGGTGACGGAACTCTCCCAGTCTTCAgacttgtctctctccaggtgatgAGCCTGTGTGGTTGGCTGTGGCTgctctactgtctccatttcctTTGGTCTGTCTGGGGTCtggatggaggtggagagggggctTGTCGGCTGGAAGCTAAGCCTGTCTCCGGCAGTGTTTATCGGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCGATCCATGTAGAAGCCCCTCTACCAGAGCAGGAGTTCAGGAGCATTAAGGGAAATTCTACCTGTACAATGTTCAACCAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAACCGTGACCCAGCCCTCCTGCCTAACCTCACCCTGGGGTTCCTGGCATCTGACACATGCCTGTCAGAGGGCACCACCCTGGGGGCGGCCCTAGCCATGGTGACCGGCAAGGAGGCCTCTGTGGTGGGCACAGAATGTGGCACAACCCCTGAGGTTCCCGTCATCATCGGGGATGCCCGCTCCTCAGCTTCCATCGTGGTGGCACAGACCCTCGGGCCGTTTAATTTACCCATGGTGAGTTACTTTGCCACCTGTGCGTGTTTGAGTGACACCTGGAGGTACCCCTCATTCTTCCGTACGGTACCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTGCTGCGTCAGCTGGGCTGGGTGTGGGTGGGGCTGTTGTCAGGGGATGGTGACTATGGCAAGTTTGGGATTCAGCTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCCTACTCTGAGGTCATTCCCAAGGTACCGTCTAAGAGACAGATCAGGCACATTGCGGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCATTTGTAGGATTCCTAGGTCAATCAGGGGCCCTGATGGAAGAGGTTGTCCGTCAGAATATTACAGATAAGCAGTGGATCGCCTCAGATGCCTGGGTCACCTACTCTACTATCTCCTCCCCGAAAAACATGCCCTCTCTTGCCGGGACAATCGGTTTTGCACTGAAGAAAGCTGATATTCCCGGCCTGGGGACTTTCCTAACACGCCTCCATCCAGACGGGGACTATCAGAAGTCCGACCTCTTCCTGAGAGAATTGTGGGAGGAGATGTTTGGGTGTTCTCTGGGGGTAGACCCCAGCGTGACACTGCCGTCCAGGCGACAGTGTACTGGGTCAGAGGTCATACGTGAGGGGGAGAGCCAGTATGCTGACGTGTCTCAGCTGAGAGCCAGCTACAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGATGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGCGGAGATGAGGTCCTTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAGGCCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCACCGTCACACGGCCCTGGTGAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCTCTCGTTTTCATTGGCCAGCCGAACCCGTGGACGTGCATGCTGAGACACACCCTGTTTGGTATAAGTTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGTCCCACCAAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGCTGGCCTTAGCTCCACCCCGACCTGCTGAGAGGAGGGGCAGACAGGGTCGGGGCCCGAGGGTCATCCTGGAGTGTGAAGTGGGCTCTGTGGTCGGCTTCTCTCTGGTGCTGGGCTACATCGGCCTTctggcctccctctgtctccttttAGCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTTCTGAGACCAGAGAGAAACACCAAGAAACACATGATGTCCAAATAGAAACCACCAAGAAAGACATGATGTCCAATTagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCAAGGAACACATGTTGTCCAATTagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCAAGGAACACATGTTGTCCAATTagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacctgatgtccaattagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCAAGAAATACATGATGTCCAAACagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgatgtccaattagaaaccaccaagaaacacatgaTGGACAATTAGAAACTATTACGAAACACATGATGTCCAATTAGAAACTATTACGAAACACATGATGTCCAAATagaaaccaccaagaaacacacGATGGACAAATATTAACTTACACTTACTCAAATCTTGGTTTAGGGCTTGTTGACATTCATTTCAACAGGGGAATGTCCATTCTGTTTGGAAACATACATTTCCTGCTATACCTTCACTATATTACTTTGTTAATATTAGAATGTGTTCTTATAATGTGTCAGAATGAAATACGTCTATATGAACAATACCAATAAAGTTTACTTAGTGTCTACTCATGCTGGAAGAGTTAGTATTGAGTCTGTCTGACAGAACTTAGACCCCCTACA
>TU2382210
GTGCATGCTGAGACACACCCTGTTTGGTATAAGTTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGTCCCACCAAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGC

Function

NR:

description
LOW QUALITY PROTEIN: vomeronasal type-2 receptor 26-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965618.1 False 3454 mRNA 0.51 11 41242573 41247822
TU2382210 True 200 lncRNA 0.54 2 41243746 41244058

Neighbor

gene id symbol gene type direction distance location
LOC110507278 LOC106581466 coding downstream 15270 41223015 ~ 41227303 (-)
LOC110508052 LOC106581482 coding downstream 97496 41140451 ~ 41145077 (-)
LOC110507230 LOC106581337 coding downstream 101779 41129677 ~ 41140794 (-)
LOC110508048 LOC106581470 coding downstream 122555 41116294 ~ 41120018 (-)
LOC110507277 LOC106581470 coding downstream 168963 41068507 ~ 41073610 (-)
LOC110507279 LOC106581477 coding upstream 19953 41267775 ~ 41274291 (-)
LOC110507280 LOC106581477 coding upstream 34931 41282753 ~ 41287429 (-)
LOC110507281 LOC106581467 coding upstream 61354 41309176 ~ 41313710 (-)
LOC110508054 LOC106613305 coding upstream 114740 41362562 ~ 41413292 (-)
LOC118944786 LOC106581464 coding upstream 325589 41573411 ~ 41680789 (-)
G2083242 NA non-coding downstream 24375 41217981 ~ 41218198 (-)
G2083241 NA non-coding downstream 24813 41217561 ~ 41217760 (-)
G2083218 NA non-coding downstream 43269 41198986 ~ 41199304 (-)
G2083189 NA non-coding downstream 72105 41170140 ~ 41170468 (-)
G2083178 NA non-coding downstream 88083 41154018 ~ 41154490 (-)
G2083300 NA non-coding upstream 2716 41250538 ~ 41290466 (-)
G2083355 NA non-coding upstream 74659 41322481 ~ 41322711 (-)
G2083360 NA non-coding upstream 77984 41325806 ~ 41326015 (-)
G2083364 NA non-coding upstream 80463 41328285 ~ 41328505 (-)
LOC110508045 LOC106581475 other downstream 267366 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 361336 40878111 ~ 40883459 (-)
LOC110508038 LOC106581456 other downstream 620879 40620620 ~ 40654523 (-)
lekr1 LOC106581448 other downstream 1055008 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1569120 39672732 ~ 39681547 (-)
G2083443 NA other upstream 175717 41423539 ~ 41424040 (-)
G2084740 LOC106613316 other upstream 1536805 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2664338 43912160 ~ 43912680 (-)
G2086783 NA other upstream 3673087 44920909 ~ 44921312 (-)

Expression


Co-expression Network