LOC110507281 (LOC106581467)


Basic Information

Item Value
gene id LOC110507281
gene name LOC106581467
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 41309176 ~ 41313710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021587165.2
atgAGCCTCTGGGGCTGGCTGTGGCTGCTCTACTGTCTCCATGTCCCTGGGTCTGTCTGGGGTCtggatggaggtggagagggggctTGTCGGCTAATAGCTAAGCCCGTCTCAGGCAGTGTTTATCGGGCAGGAGATGTGGTCATTGGGGGCCTGTTCCCCATCCATGTGGAAGCCCCTCTACCAGAGCAGGAGTTCAGGAGCATTAAGGAAAATTCTACCTGTACAATTTTCAAACAGCGTGCTTACCGCTGGCTCCAGACTATGATCTTTGCTGTGGAGGAGATTAATCGTGACCCAGCCCTCCTGCCTAACCTCACCCTGGGGTTCCTGGCGTCTGACACATGCCGGACAGAGGGCATCACCCTGGGGGCAGCCCTAGCCATGGTGACTGGCAAGGAGGCCTCCGTGGTGGGCACAGAATGTGGCACTACCCCTGAGGTTCCCGTCATCATCGGGGATGCCCACTCCTCAGCCTCCATGGTGGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTCAGTTACTTTGCCACCTGTGCGTGTTTGAGTGACAACTGGAGGTACCCCTCATTCTTCCGTACTGTTCCCAGCGATGCCTTCCAGGCTCGGGGCATGGCCAAGCTTCTGCGTCTGCTGAGATGGGTGTGGGTAGGGCTAGTGTCAGAGGATGATGATTATGGCAAGTTTGGGGTTCAGCTGCTTCTCCAAGAGCTCCAGGGATCTGGGGTGTGTGTCGCTTACTCCGAGGTCCTCCCGAAGTTACCGTCTAAGAGAAAGATCAGGCACATTGCAGACACCATCAGAGGATCTACTGCCAGAGTGGTGGTGGCATTTGTAGGATTCACGGGTCATTCAGGGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGTCCTGGGTCACCTACTCTACTATCGCCTCCCCGAAAAACATGCCCTCTCTTGCCGGGACAATCGGTTTTGCCCTGAAGAAAGCTGATATTCCCGGCCTGGGGCCTTTCCTAACACGCCTCCATCCAGACGGGGACTACCAGAAGTCCGACCCATTCCTGAGAGATTTGTGGGAAGAGATGTTTGGGTGTTCTCTGGGAGTTGACCTCAGCGTGACACTGCCGTCCCGGCGACAGTGTACGGGGTCAGAGGTCATACGTGAGGGAGAGAGCCAGTATGCTGACGTGTCTCAGCTGAGAGCCAGCTATAATGTGTACAAGGCTGTGTACGCCATCGCCTACGCCATACAGGATATGATGGCCTGTCGACCAGGGGATGGAGTCTTTAATGGTGGACAGTGCCCTGATATCAGGAAGCTTCAGCCCAGCCAGATTGTTCATTACCTGAGGGGAGTGAACTTCAGTACTCCTGTGGGGGAATCTTTCCACTTCGACATTAATGGTGATCCGCCTGCCTCTTATGACATCATCAACTGGCATGTGACCCCCGAGGGGACGGCAGAGTTTGTCCAGGTCGGACATTTTCTGTCCTCTGAGGGATCGGACGACCAGTTTCACATCGACATGGATAAAGTGGTGTGGGGTGGGGGCAGTGGAGATGAGGTCCTTGTGTCTGTATGCAGTGCTGACTGTCCCCCTGGTACCAGGCATGCGGTACAGAAGGGGAGACCTGTGTGCTGCTTTGACTGTCTGTCCTGTGCTGAGGGAGAGATCAGcaacacaacagGGTCAGTTGAGTGTATTAGGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCACCGTCACACGGCCCTGGTGAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCTCTCGTTTTCATTGGCCAGCCGAACCCGTGGACGTGCATGCTGAGACACACCCTGTTTGGTATAAGCTTTGTGTTCTGCATCTCCTGTCTGCTCAGCAGGactgtggtggtgctggtggcCTTCAGGGCCACTCTGCCTGGAGAGAACCTGATGAGATACTTCAGCCCCACCCAGCAGAGGATGGGTATCTCACTCTGCACACTCATCCAGGTGCTGATCTGTGTGCTGTGGCTGGCCTTAGCTCCACCCCGACCTGTTgagaggaggggcagagagggtcggGGGCCAAGGGTCGTCCTGGAGTGTGAGGTGGGCTCTGTGATCGGCTTCTCTCTGGTGCTGGGCTACATTGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAGGCCAAGTTCATCACCTTCAGCATGCTGATCTTCTGTGCCGTGTGGATCTCCTTCATCCCTGCCTACGTCAGCTCTCCTGGGAAGTACACAGTAGCTGTAGAGATCTTTGCCATCCTGGCCTCCAGCTTTgggctgctgttctgtctgtttgcTCCAAAGTGTTACATCATCCTTCTGAGACCAGAGAGAAACACCAAGAAACACATTATGTCCAAATagaaaccaccaagaaacacatgaTGTCCAATTAGAAACCACCGAGAAACACATGATGTCCAATTAGAAACCACCTAGAAACACATGATGTCCAATTAGATACTACCAAGAAACACATTATGTCCAATTAGAAACTACCAAGAAATACATGATGTCCAAATATTAACTTAAACATACTCACATCATGATTTAGGGCTCGTTGACATTCATTTCAACATGGGAATGTCCATTCTGTTTGGAAACATTATTTTCCTGCTATACCTTCACTATATTACTTTGTTAATATTAGAATGTGCCCTT
>TU2382254
GGTGTCCAGAGCGGTTCTGGTCCAACCCTGATCGTACGGCCTGCATCCCCCAGCTGGTGGACTTCCTCTCCTACAGCGACACCATGGGCGTCATCCTGTCTGTCATCTCAGTTTCCGGGGCAACACTCACAGCCGGTGCCCTGGCCACCTTCCTCTACCACCGTCACACGGCCCTGGTGAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTCCTTCTGTCGCTCAAGCTCTGCTTCCTGTGTGCTCTCGTTTTCATTGGCCAGCCGAACCCGTGGACGTGCATGCTGAGACACACCC
>TU2382255
GCAGATACCAGTTAGAGTATTGTTAATGATTTGTAACACAGCTGTGGCAGTGTCCTTGTGTCTTACCGTGTCTTGATGCCCTTTACAGACACAATAATTTCCTAATTGATAATCATGCATTTCATCTTGACTATCTTGATCTATTTAACAATTTCATTCTCCAGGCCCTGATGGAAGAGGTTGTCCGTCAGAACATTACAGATAAGCAGTGGATTGCCTCAGAGTCCTGGGTCACCTACTCTACTATCGCCTCCCCGAAAAACATGCCCTCTCTTGCCGGGACAATCGGTTTTGCCCTGAAGAAAGCTGATATTCCCGGCC
>TU2382257
GACACATGCCGGACAGAGGGCATCACCCTGGGGGCAGCCCTAGCCATGGTGACTGGCAAGGAGGCCTCCGTGGTGGGCACAGAATGTGGCACTACCCCTGAGGTTCCCGTCATCATCGGGGATGCCCACTCCTCAGCCTCCATGGTGGTGGCACAGACCCTCGGGCCGTTTGATTTACCCATGGTGAGGCAGGGGTTGGATTACAGGTTGGGATAAGATGATGACTCTTTTCACAATCCATTTCAATCTCTATCTAGATTTCGCTCTCTCTAACGTTTactttccttctccctctgcaC

Function

NR:

description
extracellular calcium-sensing receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021587165.2 False 2907 mRNA 0.53 11 41309176 41313710
TU2382254 False 297 lncRNA 0.60 2 41310173 41310578
TU2382255 False 321 lncRNA 0.44 1 41312045 41312365
TU2382257 True 299 lncRNA 0.55 1 41312965 41313263

Neighbor

gene id symbol gene type direction distance location
LOC110507280 LOC106581477 coding downstream 21747 41282753 ~ 41287429 (-)
LOC110507279 LOC106581477 coding downstream 34885 41267775 ~ 41274291 (-)
LOC110508053 LOC106581466 coding downstream 61354 41242573 ~ 41247822 (-)
LOC110507278 LOC106581466 coding downstream 81873 41223015 ~ 41227303 (-)
LOC110508052 LOC106581482 coding downstream 164099 41140451 ~ 41145077 (-)
LOC110508054 LOC106613305 coding upstream 48852 41362562 ~ 41413292 (-)
LOC118944786 LOC106581464 coding upstream 259701 41573411 ~ 41680789 (-)
LOC110508065 LOC106581500 coding upstream 492998 41806708 ~ 41809013 (-)
LOC110508063 LOC106581498 coding upstream 613207 41926917 ~ 42107164 (-)
aadac LOC106613299 coding upstream 948320 42262030 ~ 42285545 (-)
G2083300 NA non-coding downstream 18710 41250538 ~ 41290466 (-)
G2083242 NA non-coding downstream 90978 41217981 ~ 41218198 (-)
G2083241 NA non-coding downstream 91416 41217561 ~ 41217760 (-)
G2083218 NA non-coding downstream 109872 41198986 ~ 41199304 (-)
G2083355 NA non-coding upstream 8771 41322481 ~ 41322711 (-)
G2083360 NA non-coding upstream 12096 41325806 ~ 41326015 (-)
G2083364 NA non-coding upstream 14575 41328285 ~ 41328505 (-)
G2083368 NA non-coding upstream 18097 41331807 ~ 41332023 (-)
G2083377 NA non-coding upstream 26185 41339895 ~ 41340150 (-)
LOC110508045 LOC106581475 other downstream 333969 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 427939 40878111 ~ 40883459 (-)
LOC110508038 LOC106581456 other downstream 687482 40620620 ~ 40654523 (-)
lekr1 LOC106581448 other downstream 1121611 39984103 ~ 40190414 (-)
G2082006 NA other downstream 1635723 39672732 ~ 39681547 (-)
G2083443 NA other upstream 109829 41423539 ~ 41424040 (-)
G2084740 LOC106613316 other upstream 1470917 42784627 ~ 42785035 (-)
G2085726 NA other upstream 2598450 43912160 ~ 43912680 (-)
G2086783 NA other upstream 3607199 44920909 ~ 44921312 (-)

Expression


Co-expression Network