LOC110508094 (tnfaip1)


Basic Information

Item Value
gene id LOC110508094
gene name tnfaip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43535555 ~ 43549204 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508094
TTATCGTCGTTGCCTTGTTAACATTGACAATTGTAGGTGGCGTACATATAACATAGCTTTTAATGTACTAACGAACAGCTGTTCAACAAACTAACAACAAACGTATCCCAAGAGAAAGAAGGCGTGGGTATGATCTGCCTGGCCAGTGAAAggctgtgccccccccccccagtagctGTCACCACGGCGGGGGACATCAGGACCTCCATCTGCAGGGTGGTCATCTACCTTCAGAGGGACATGTCCGGGGACAGCTGCCAGCTCCCCCTGCACCGGCTATGCCTCCAAACCCAGGTCATCTCCACTGGCTCACAAGCCATTAGACCTTCCCATGAAGCCTCCCAGATGGCGTGTCCCAAGTCCAAGACGTGCAGCTACAGAGCGGCGTTGGGCCTGGGTAACAAGTATGTGCGTCTAAACGTAGGGGGGACCCTGTTCTACACCACGCTGCAGGTGCTCACCAGGCAGGACTCCGTGCTGAAGGCCATGTTCAGTGGCAGGAAGGAGGTCTTGATTGACAGAGAAGGCTGGATCCTGATAGATCGTTGTGGGTAGCACTTTACCTCCATCCTGATGTACCTGCGGGAGGAAGGAGGTCACCTTGCCCCCTGGCAGACAGGGGCCTCTAGAGCTGCTGGCAGAGACAAATCATTATCTCATCCAGGGTCTGGTGGAGCTGTGCCAGGGAGACTTGCAGGACCAGAAGGAGCAGTCTCTGTGTGTAATCCCTGTTGTCACCTCTGCCaaggaggaagagagactgaTCCAGGCCTACACCAAGCCTGTGGTAAAGCTGCTGTACAAAAGAAGCAACAACAAGTACTCCTATACAAGTAACTCAGACGACAACCTGTTGAAGAACATTGAGCTGTTTGACAAGCTGTCTCTGAGCTACAATGGCTGTGTTCTTTTCATCAAGGACGTGATCGGCGACGAGATCTGCTGCTGGTCGTTCTACGGACAGGGACGCAAACTGGCGGAGGTCTGCTGCACATCCATAGTCTACGCCACAGAGAAAAAACAGACCAAGGTGGAGTTTCCAGAGGCCAGGATCTACGAGGAGACCCTGAACGCTTTGCTTTATGAGACACTTCCTGTCCCTGACGACTCCCTATTGGAGGCCACACGCCGTCGACACGCCCACAGCCACACCCACTGTGGTTTCCACAGCAAGGAGGAGGAAGGCCCCACCCACTCTGGGctgttcgtgcacacacacaaacaaacaacaaaatcCGTGAGGCAAGTCGAAATCTGTAGCTGAAGTCTGCCCCTTtttgtcggtgattggtcaacagcagggattcttcaatgaagtgttttttttattgtcgTTCAACAAGAGACGACTAGTTTTCATGCCCATTTTTttccacttgagaaatactgcaccaaacctcttagttagatgtaaaattgcgcgtCTAAGATCTCTGCAAAACGttaaaatgaatgacagatttcaTAAGTTATCTCAGatgaattctgactattttgaggaagtgtattctggctacggcatctcaatatagacaaacagtactattgacactttttttcacatttttcaAGGGAGTATGTGAGCACACTTGTTTGCCTACGGCTAGGCGCCAGCCGAACTGTAGCTAGCCGACGCCTTAAGGATGTGTCCCATCTAACCACAGAGGAGGAAACTGGTCCCCGCTGGCTCTTCACTTAATCACTACACCCACCACTGAAGCACTGGTGGTGTTGGCCCCAAAATGGCCTTgggcacaaaatggctgccaagCTGCATCACCCTGGTGCCTGACagactttgttgatggaaaactTGTGATTTAAAATGTTGAGGTGCTTATGCTGTTTCTTCTTTGTTTTATATAGAACTCTCTTCTTCACAAAACAATCAAATCTGTGTTCATACAATCAAAATTTGCAACTTCAAATCAGTGAAGGTGAAGGGGGAGAAGACCggttaaagatggatttttaaaccttgacacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaatattgaagtgcctttgaacggggtatggtagcaggtgccaggcccatccagccaatttgacacaactatgggaaacATTGTAGTCGatatgggccagcattcctgagGAATGCTTTCGACTCCTTGTGGAGTCCATActcccaacaaattgaggctgttctgagaacaaagcaagggggtgcaactcaatagttgggaaggtgttcctaatatttggtCTACTCAGTGTAGGTAGCCATCAGGCTTGTGTACATTTATTAtacagctggggggggg

Function

symbol description
tnfaip1 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

NR:

description
PREDICTED: BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508094 True 2318 mRNA 0.49 8 43535555 43549204

Neighbor

gene id symbol gene type direction distance location
LOC110519585 LOC106581519 coding downstream 6208 43295811 ~ 43529347 (-)
LOC118944772 LOC106581517 coding downstream 885654 42647144 ~ 42649901 (-)
LOC110508058 LOC106581494 coding downstream 970975 42561570 ~ 42564580 (-)
neu4 LOC106581489 coding downstream 995215 42516527 ~ 42540340 (-)
aadac LOC106613299 coding downstream 1250010 42262030 ~ 42285545 (-)
tmem97 tmem97 coding upstream 7372 43556576 ~ 43558533 (-)
LOC110508089 LOC106581526 coding upstream 187866 43737070 ~ 43762876 (-)
LOC110508088 LOC106581525 coding upstream 220036 43769240 ~ 43783275 (-)
LOC110507241 LOC106581541 coding upstream 713761 44262965 ~ 44310016 (-)
gbe1b gbe1 coding upstream 813115 44362319 ~ 44721642 (-)
G2085527 NA non-coding downstream 2905 43532282 ~ 43532650 (-)
G2085513 NA non-coding downstream 28438 43501034 ~ 43507117 (-)
G2085508 NA non-coding downstream 43156 43491907 ~ 43492399 (-)
G2085450 NA non-coding downstream 152250 43382330 ~ 43383305 (-)
G2085444 NA non-coding downstream 160480 43372228 ~ 43375075 (-)
G2085499 NA non-coding upstream 63 43549267 ~ 43554070 (-)
G2085557 NA non-coding upstream 36163 43585367 ~ 43585898 (-)
G2085558 NA non-coding upstream 37602 43586806 ~ 43587089 (-)
G2085562 NA non-coding upstream 46846 43596050 ~ 43596967 (-)
G2085571 LOC108425843 non-coding upstream 71312 43620516 ~ 43637291 (-)
G2084740 LOC106613316 other downstream 750520 42784627 ~ 42785035 (-)
LOC118944786 LOC106581464 other downstream 1854863 41573411 ~ 41680789 (-)
G2083443 NA other downstream 2111515 41423539 ~ 41424040 (-)
LOC110508045 LOC106581475 other downstream 2560348 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 2654318 40878111 ~ 40883459 (-)
G2085726 NA other upstream 362956 43912160 ~ 43912680 (-)
G2086783 NA other upstream 1371705 44920909 ~ 44921312 (-)
G2087090 LOC106593344 other upstream 1981152 45530356 ~ 45530780 (-)
G2087288 NA other upstream 2247866 45797070 ~ 45798330 (-)
ndufc2 nduc2 other upstream 3423377 46972581 ~ 46975116 (-)

Expression


Co-expression Network