LOC110508088 (LOC106581525)


Basic Information

Item Value
gene id LOC110508088
gene name LOC106581525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43769240 ~ 43783275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588532.2
CAATGCGTTCCTGAGCATGCCTACAAGGCTTGAAAATAAACAAAGACCGAAAGCGGGCGATTGATCATTAAGCTGCCATAAACTTAACTTAAAATACTTTTGAAACCATTTTTAGGTACTACAAACCCCCAGCATCTGAAGAAAGACGTCTCTACAGCCATGGAAAACGCATTGTTGATGCGAGTGAGTGTTTTTTCCGATCAGGGAGGCAGAAAATACATGGAGGATGTTACCGAGGTAGTAATGGAGCCCGAGCCGGGGGAAGACGAGCTGAACTCGGACGAACAAGATGAGACCAAAGGGAATAGCTCGACGGCCGACATTGTGCCGGAAAAGCCTGAAAACGAGCATCAAGATCGGACTGCACACAACGATCCTCTATCTGCCTCTGCATCCACTACAGTTACATGGACACAAAATGTACAAAATGGGAACCAACGTTTTGCAGCTGCTGCACTGGCAGGATCGAAAGTGGAGAGTACTCCGGCTGCGACCAAGAGCGATAACCACCCCCAGCGCTCAGTGGCTTTCTTCGCGGTGTTCGATGGCCACGGAGGCCGCGAAGCAGCGCAATTCGCAAGGGACTATTTGTGGGAATTCATCAAGAAACAGCGGGGCTTTTGGTCCAAGGATGACGAAGAAGTGTGTGCAGCTATTCGGAAAGGTTTCGTTGCATGCCACCATGCCATGTGGAAAAAGCTATccgaATGGCCCAAGACTTTCACAGGGTTACCCAGCACCTCAGGCACCACGGCCAGTGTCGTGGTAGTCCGAGGGAACCGCATGTACGTGGCCCACGTAGGAGACTCTGCCATAGTGCTGGGGGTCCAGGATGACCCCTCTGACCAGTTCATCAGGGCCGTGGAGGTTACACAGGACCACAAGCCTGAGCTGCCCAAGGAGAGGGAACGCATCGAAGGGCTGGGGGGCAGTGTGATAAAGAAGTCTGGTGTGAACCGGGTGGTGTGGAAGAGACCCAGGCTGACTCATAACGGGCCGGTCCGGAGGAGCACCGTCATGGACCAGATACCGTTCCTGGCCGTGGCCAGAGCTCTAGGGGACCTGTGGAGCTATGACTTCTACAGCGGAGAGTTTGTCGTGTCCCCGGAGCCAGACACCTGTGTTCTGACCCTTGACCCCAGTAAACACCGTTACGTCATCCTGGGCAGTGACGGGCTGTGGAACATGGTGCCCCCCCAGGACGCCGTCTCCATGTGCCAGGACAACGATGAGGCCATGGCGCCGTGCGGGGTGTCCAGCGCTCGCCAGCTGGTGAGCCACGCCCTCCTGCGGTGGCGCCAGAGGATGCTGCGTGCGGACAACACGTCGGCCATCGTGATCGCCCTGCAGGAGCCGGGTGTCCCTCAGGAACCTCTCCACCACGAGGAGGTGCTGCTGAACCTGGCCGAGGGACAACACTGTGGCCCCGCATCGGACTCCCGCTCCAACACACCACTCGTCAAGgttcCAGACATGGACATGTCGTCTGCTGTGTGTGAGCTCCTCCCGACCCTGGAGAGACGAAACGGCCTATCAGGGAGCAGCCTGTACGCCATGGCCCTATCAGATCCCTTCGGCCCGCCCCTCTCTGACTCGGATGACGACTCCCGCACCAGGTTTCCCTTGATGACCGCCAGCCCCGCCCCGGGGGAGAAACTTAGTGAGGTCAATGCCAGGATGCCCGGCGGCAAACGGACGCTGGATGAGACATCGCCCAACCCCGTCCCGTCCGCCAAGAGGAGCCGGAGGAAGAATGGCGAGACCACACCAGTGGGAGGGGCGGGGGTGGTGGGGGCAAAAGACGGTGGAGAAAAGGACCAGAAACAGTCTCCGACTCCGCCCCCTGCCAACGTGTCCCCTGCACTACTCCAGCAGCAACACGGCAAGACCACTGTGTGCGTgtgctgagagacacacacacacctactctctctctcacacacacacacacacacacactctgcagacAGATGGATCCTCCTCACCACACATACAAACAGGGATACAAGACCGACAGTATCATTCTGCTTCTTCTCTGACCTTTTTACAAATGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGGTCGCTCCTGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGTCGCTTCTGACTGAGAGACCCGGGTCGCTCCTGACTGAGAGACCCCGGTCGCTTCTGACTGAGAGACCCCGGTCGCTTCTGACTGAGAGACCCCGGTCGCTTCTGACTGAGAGACCCCGGTCGCTCCTGACTGAGAGACCCCGGTCGCTCCTGACTGAGAGACCCCGGTCGCTCCTGACTGAGAGACCCCGGTCGCTTCTGACTGAGAGACCCGGGTCGCTTTCATTGAGGTCATTACAATGAGGTCATCATACCATATGTCCATgtcagccagtcagacagtcagccagccagccagccagtcagtcagtaagtcagtcagtccagtGTGGGCATTTTGTACACTTGTCTCTGATATCTTTTGTCTTACTCTGTTCCCCGGATGGTGGAGAATGATTTTAAGTGGTGGTCTGTCgtttttaaataattttttaaaCACCTGTAAGTAACTCTGTGATACAAACGAAGGGTAAACATTTTCTGGCTGCAAAACGGCTCTTGCAAACACATACAAAGTTTCCCAAAATAACCACAACATTTGGGGTCAAACAGAGGGTGGACTTCCACATCTGATGATGACATCACATGGAACACATTTCCTCAGTTTTCACTTGAAGTCCACATAAAGTTACAAGATACtgttacactctctctctctctgtctctgtctctgtctgtctctgtctctctctctctctgtctctctctctgtctctctctctgtctctctctgtctctctctctgtctctctctctctctgtctc

Function

NR:

description
protein phosphatase 1D-like isoform X1

GO: NA

KEGG:

id description
K10147 PPM1D, WIP1; protein phosphatase 1D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588532.2 True 2971 mRNA 0.55 6 43769240 43783275

Neighbor

gene id symbol gene type direction distance location
LOC110508089 LOC106581526 coding downstream 6364 43737070 ~ 43762876 (-)
tmem97 tmem97 coding downstream 210707 43556576 ~ 43558533 (-)
LOC110508094 tnfaip1 coding downstream 220036 43535555 ~ 43549204 (-)
LOC110519585 LOC106581519 coding downstream 239893 43295811 ~ 43529347 (-)
LOC118944772 LOC106581517 coding downstream 1119339 42647144 ~ 42649901 (-)
LOC110507241 LOC106581541 coding upstream 479690 44262965 ~ 44310016 (-)
gbe1b gbe1 coding upstream 579044 44362319 ~ 44721642 (-)
rwdd2b rwdd2b coding upstream 1652446 45435721 ~ 45442773 (-)
stoml3a LOC104925222 coding upstream 1890226 45673501 ~ 45686113 (-)
slc25a15a LOC106581545 coding upstream 1904679 45687954 ~ 45701584 (-)
G2085645 NA non-coding downstream 14299 43754365 ~ 43754941 (-)
G2085642 NA non-coding downstream 34609 43734382 ~ 43734631 (-)
G2085639 NA non-coding downstream 37508 43731403 ~ 43731732 (-)
G2085620 NA non-coding downstream 68924 43696584 ~ 43700316 (-)
G2085659 NA non-coding upstream 6468 43789743 ~ 43792295 (-)
G2085671 NA non-coding upstream 34654 43817929 ~ 43818456 (-)
G2085676 NA non-coding upstream 39527 43822802 ~ 43823220 (-)
G2085703 NA non-coding upstream 75459 43858734 ~ 43858959 (-)
G2085722 NA non-coding upstream 125118 43908393 ~ 43909156 (-)
G2084740 LOC106613316 other downstream 984205 42784627 ~ 42785035 (-)
LOC118944786 LOC106581464 other downstream 2088548 41573411 ~ 41680789 (-)
G2083443 NA other downstream 2345200 41423539 ~ 41424040 (-)
LOC110508045 LOC106581475 other downstream 2794033 40967894 ~ 40977862 (-)
LOC110507273 LOC106581487 other downstream 2888003 40878111 ~ 40883459 (-)
G2085726 NA other upstream 128885 43912160 ~ 43912680 (-)
G2086783 NA other upstream 1137634 44920909 ~ 44921312 (-)
G2087090 LOC106593344 other upstream 1747081 45530356 ~ 45530780 (-)
G2087288 NA other upstream 2013795 45797070 ~ 45798330 (-)
ndufc2 nduc2 other upstream 3189306 46972581 ~ 46975116 (-)

Expression


Co-expression Network