cog6 (cog6)


Basic Information

Item Value
gene id cog6
gene name cog6
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46012193 ~ 46197229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964970.1
AGATGACCAGCAGATTGAAGGCAGCCAAGGATCAGACCCAGGACCTGATCGTGAAGACCAACAAGCTGCAGGGAGAGAATCATCGTTTAGAGGTGCGGTCCCAGGTGGCTCAGGCCTTCCTGTCTAAGTTCCAGCTGTCCTCTGAAGAGATGGACACACTACGAGGGGTAAGAGACGCACCCGTCACGGAGGACTTCTTCAAGGCTCTGAGCAGAGTGAAGAACATCCATGAAGACGTCAGGATTCTCCTGAGGACCAACCAGCAGACTGCAGGGCTGGACATCATGGAGCAGATGGCTGTGTTACAGGAGACGTCCTACGAACAGCTCTACCGCTGGACACAGAacgaGTGTCGTGGTCTGACCCAGGAGTCCTGTGACATCAGTCCAGTGCTTAGTCAGGCTATGGAGGCCTTGCAGGACCGCCCTGTTCTCTACAAgtacaCCTTGGATGAGTTTGGGACAGCTCGAAGGTGTGTGGTGGTGCGGGGGTTCATTGATGCCCTGACCAGAGGGGGTCCAGGGGGCACGCCTCGACCCATAGAGATGCACTCCCACGACCCTATGAGGTACGTAGGGGACATGTTAGCGTGGCTGCACCAAGCCACCGCATCGGAGAAGGAGCACCTGGAGGCCCTGCTGAAACAGGTCACAGCACGAGCACCAGGAGTGGATGAGACCATGCAAGAGGTGGTGGGACACATCACTGAGGGAGTCTGCAGACCTCTTAAAGTGCGTCTGGAGCAGGGAATCTTGGCTGAGCCgggttctgttctactctacaagCTGTCCAACCTGCTCAAGTtctaccaccacaccatcagtTGTATCGTGGGCACCAGTGTAGCCTCCCTGCTGATGACCATCGAAGAGATGCACATCCTAAGCAAGAAGATGTTTTTCAACAGTCTCAGTCTCCACGCGAGCAGGCTCATGGACAAGgtggAGCTCCCCCCTCCAGACCTGGGCCCCACCTCCTCTCTGACCCAGACCCTGGCTCTCCTGAGGGAGGTGTTGGCCTCTCATGACTCCTCTGTAGTTCCTCTGGACGCTCGCCAGGCTGACTTTGCTCAGgtGTTGTCTTGTATCCTGGACCCCCTGCTCCAGCTGTGTACAGTTTCAGCCAGTAACCTCGGTACCGCAGACATGGCAACGTACATGGTGAACTCTCTGTATGTGATGAAGACCACCCTGGCTCTGTTTGAGTTCACAGACAAGAGGCTGGAGATGCTGGAGTTCCAGattGAAGCTCACCTGGACACGCTGATCAACGAACAGGCTTCGTTCGTTCTGACCCGTGCTGGACTGAGTTACATCTACAGCTGTGTACAGCAGCACAGCCCAGAACTGGGGCCTCTGTCTAACCTCCCCAGTATGGACAGCTCCTCTCTGAAAGCATCCATGaCCCAGTTTGATCGTTACCTGTCTTCTCCTGATACCATGGTGATGTCTCAACTCAACTTCCTCCTCAGTGCTGCCATCAAAGATCAGATCTTCAACCAGTCGACAGAGCTGGTGTGCAGGGCGTATGGAGAGGTGTACACAGCCGTGACCAGCCCAGCCAACAGCTACAAGGAACCAGACAACCTGGTACCACGGTCTCCtcagcaggtccaggctctgctgtccTAACACACCTGGTCTCACCTTGGCTCTACGTGTCTCTCTGGACCCACCCGAAGCCTACTCACACAGTGGTGAAGGAAGAAAGGCCAATGGCTTTGTGAAGTGGACCGTTACATGAAATGATTGTGTGTTAAGTTATAACCTGTATATGTAAATAGAACTGGGAATAAATTAGGTTTAACAGGAA
>XM_036964969.1
ATCTACCCGGACATTTATTGCCGACGCACCAAACATCTTCCTGGTTTGACGTGGAGAAGATTGTTTACAATGTCAGAGAATAAAGTCGAAATGTCAACTGAAACCGCTTTAATTCAAAACAGTGGCAATGTGCCTTGTCAGCagaataacccactgtctaggaAACTCAATAAAATTCTAGAGACCAGGCTAGATAATGACAAGgagATGTTGGAAGCTCTGAAGGCTCTGTCGGTGTTCTTCACAGAGAACAGTCTTCGGACCCGCAGGAACCTGCGGGGAGACATCGAGAGACGGAGCCTGAACATCAACGAAGAGTTTGCCAGGATATTTAAAGATGTCAAAGAGGAGCTTGAGAGTGTGCACGAGGACGTCCAGGCCATGAGCACCTGTTGTgaagagatgaccagcagattgaagGCAGCCAAGGATCAGACCCAGGACCTGATCGTGAAGACCAACAAGCTGCAGGGAGAGAATCATCGTTTAGAGGTGCGGTCCCAGGTGGCTCAGGCCTTCCTGTCTAAGTTCCAGCTGTCCTCTGAAGAGATGGACACACTACGAGGGGTAAGAGACGCACCCGTCACGGAGGACTTCTTCAAGGCTCTGAGCAGAGTGAAGAACATCCATGAAGACGTCAGGATTCTCCTGAGGACCAACCAGCAGACTGCAGGGCTGGACATCATGGAGCAGATGGCTGTGTTACAGGAGACGTCCTACGAACAGCTCTACCGCTGGACACAGAacgaGTGTCGTGGTCTGACCCAGGAGTCCTGTGACATCAGTCCAGTGCTTAGTCAGGCTATGGAGGCCTTGCAGGACCGCCCTGTTCTCTACAAgtacaCCTTGGATGAGTTTGGGACAGCTCGAAGGTGTGTGGTGGTGCGGGGGTTCATTGATGCCCTGACCAGAGGGGGTCCAGGGGGCACGCCTCGACCCATAGAGATGCACTCCCACGACCCTATGAGGTACGTAGGGGACATGTTAGCGTGGCTGCACCAAGCCACCGCATCGGAGAAGGAGCACCTGGAGGCCCTGCTGAAACAGGTCACAGCACGAGCACCAGGAGTGGATGAGACCATGCAAGAGGTGGTGGGACACATCACTGAGGGAGTCTGCAGACCTCTTAAAGTGCGTCTGGAGCAGGGAATCTTGGCTGAGCCgggttctgttctactctacaagCTGTCCAACCTGCTCAAGTtctaccaccacaccatcagtTGTATCGTGGGCACCAGTGTAGCCTCCCTGCTGATGACCATCGAAGAGATGCACATCCTAAGCAAGAAGATGTTTTTCAACAGTCTCAGTCTCCACGCGAGCAGGCTCATGGACAAGgtggAGCTCCCCCCTCCAGACCTGGGCCCCACCTCCTCTCTGACCCAGACCCTGGCTCTCCTGAGGGAGGTGTTGGCCTCTCATGACTCCTCTGTAGTTCCTCTGGACGCTCGCCAGGCTGACTTTGCTCAGgtGTTGTCTTGTATCCTGGACCCCCTGCTCCAGCTGTGTACAGTTTCAGCCAGTAACCTCGGTACCGCAGACATGGCAACGTACATGGTGAACTCTCTGTATGTGATGAAGACCACCCTGGCTCTGTTTGAGTTCACAGACAAGAGGCTGGAGATGCTGGAGTTCCAGattGAAGCTCACCTGGACACGCTGATCAACGAACAGGCTTCGTTCGTTCTGACCCGTGCTGGACTGAGTTACATCTACAGCTGTGTACAGCAGCACAGCCCAGAACTGGGGCCTCTGTCTAACCTCCCCAGTATGGACAGCTCCTCTCTGAAAGCATCCATGaCCCAGTTTGATCGTTACCTGTCTTCTCCTGATACCATGGTGATGTCTCAACTCAACTTCCTCCTCAGTGCTGCCATCAAAGATCAGATCTTCAACCAGTCGACAGAGCTGGTGTGCAGGGCGTATGGAGAGGTGTACACAGCCGTGACCAGCCCAGCCAACAGCTACAAGGAACCAGACAACCTGGTACCACGGTCTCCtcagcaggtccaggctctgctgtccTAACACACCTGGTCTCACCTTGGCTCTACGTGTCTCTCTGGACCCACCCGAAGCCTACTCACACAGTGGTGAAGGAAGAAAGGCCAATGGCTTTGTGAAGTGGACCGTTACATGAAATGATTGTGTGTTAAGTTATAACCTGTATATGTAAATAGAACTGGGAATAAATTAGGTTTAACAGGAA
>TU2388084
cccctctctctgtctctctttgtctctctctccaccctctctctgtctctctctctcaggtacaCCTTGGATGAGTTTGGGACAGCTCGAAGGTGTGTGGTGGTGCGGGGGTTCATTGATGCCCTGACCAGAGGGGGTCCAGGGGGCACGCCTCGACCCATAGAGATGCACTCCCACGACCCTATGAGGTACGTAGGGGACATGTTAGCGTGGCTGCACCAAGCCACCGCATCGGAGAAGGAGCACCTGGAGGCCCTGCTGAAACAGGTCACAGCACGAGGAGTGGATGAGACCATGCAAGAGGTGGTGGGACACATCACTGAGGGAGTCTGCAGACCTCTTAAAGTAAGACCCTCCAACCCAGTGTCTTTGTGTGTACATTTCCGTTTTTTCAGTCGACTGTATTTGACTGTAGAACTAATAAAATAAATACTACTGGAAAGACTGACTGTCCTGGGATAAATACTACTGGAAAGACTGACTGTCCTGGGATAAATACTACTGGAAAGAAATTATGTCCTGGGATAAATACTACTGGGTAGACCAACTGTCCTGGGATAAATACTACTGGGTAGACCAACTGTCCTGGGATAAATACTACTGGATAGACCAACTGTCCTGGGATAAATACTACTGGATAGACCAACTGTCCTGAGATAAATACTACTGGATAGACCAACTGTCCTGGGATAAATACTACTGGATAGACTGACTGTCCTGGGATAAATACTACTGGAAAGAAATTATGTCCTGGGATAAATACTACTGGAAAGAAATTATGTCCTGGGATAAATACTACTGGATAGACCAACTGTCCTGAGATAAATACTACTGGATAGACCAACTGTCCTGGGATAAATACTACTGGAAAGACTGACTGTCCTGGGATAAATACTACTGGAAAGAAATTATGTCCTGGGATAAATACTACTGGAAATAAATTATGTCCTGGGATAAATACTACTGGATAGACCAACTGTCCTGGGATAAATACTACTGGAAAGACTGACTGTCCTGGGATAAATACTACTGGATAGACTGACTGTCCTGGGATAAATACTACTGAATAGACCAACTGTCCTGGGATAAATACTACTGGATAGACTGACTGTCCTGGGATAAATACTATTGGATAGACTGACTGTCCTGGGATAAATACTACTGCATAGACTGACTGTCCTGGGATAAATACGACTGGATAGACCAACTGTTCTGGGATAAATACTACTGGATAGACTGACGGTCCTGGGATAAATACGACTGGATAGACCAACTGTTCTGGGATAAATACTACTGGATAGACTGACTGTCCTGGGATAAATACTACTGGATAGACCGACTG

Function

symbol description
cog6 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIl. Orthologous to human COG6 (component of oligomeric golgi complex 6).

NR:

description
component of oligomeric golgi complex 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964970.1 False 1812 mRNA 0.54 16 46012193 46193881
XM_036964969.1 False 2212 mRNA 0.53 18 46012193 46197229
TU2388084 True 1342 lncRNA 0.45 3 46109303 46116736

Neighbor

gene id symbol gene type direction distance location
slc25a15a LOC106581545 coding downstream 310609 45687954 ~ 45701584 (-)
stoml3a LOC104925222 coding downstream 326080 45673501 ~ 45686113 (-)
rwdd2b rwdd2b coding downstream 569420 45435721 ~ 45442773 (-)
gbe1b gbe1 coding downstream 1290551 44362319 ~ 44721642 (-)
LOC110507241 LOC106581541 coding downstream 1702177 44262965 ~ 44310016 (-)
LOC110515379 NA coding upstream 165433 46362662 ~ 46365128 (-)
lpar6a LOC106592078 coding upstream 298323 46409330 ~ 46497886 (-)
rcbtb2 rcbtb2 coding upstream 338972 46536201 ~ 46571673 (-)
LOC118944689 NA coding upstream 571419 46768648 ~ 46770702 (-)
ndufc2 nduc2 coding upstream 775352 46972581 ~ 46975116 (-)
G2087921 NA non-coding downstream 742 46011372 ~ 46011451 (-)
G2087911 NA non-coding downstream 2250 46009743 ~ 46009943 (-)
G2087910 NA non-coding downstream 2501 46008842 ~ 46009692 (-)
G2087905 NA non-coding downstream 10407 46001573 ~ 46001786 (-)
G2087890 NA non-coding downstream 31163 45980751 ~ 45981030 (-)
G2088009 NA non-coding upstream 67220 46264449 ~ 46264923 (-)
G2088027 NA non-coding upstream 103488 46300717 ~ 46302360 (-)
G2088043 NA non-coding upstream 126045 46323274 ~ 46323840 (-)
G2088050 NA non-coding upstream 140331 46337560 ~ 46337823 (-)
G2088052 NA non-coding upstream 146930 46344159 ~ 46346992 (-)
G2087288 NA other downstream 213863 45797070 ~ 45798330 (-)
G2087090 LOC106593344 other downstream 481413 45530356 ~ 45530780 (-)
G2086783 NA other downstream 1090881 44920909 ~ 44921312 (-)
G2085726 NA other downstream 2099513 43912160 ~ 43912680 (-)
G2084740 LOC106613316 other downstream 3227158 42784627 ~ 42785035 (-)
G2088345 NA other upstream 806636 47003865 ~ 47004875 (-)
G2088531 NA other upstream 1055446 47252675 ~ 47253186 (-)
G2088739 NA other upstream 1347074 47544303 ~ 47550500 (-)
G2089393 NA other upstream 1596367 47793596 ~ 47794379 (-)
G2087925 NA non-coding upstream 22732 46139468 ~ 46140788 (-)
G2087924 NA non-coding upstream 28294 46145030 ~ 46146931 (-)
G2087951 NA non-coding upstream 31403 46148139 ~ 46149551 (-)
G2087915 NA non-coding upstream 34005 46150741 ~ 46154971 (-)
G2087918 NA non-coding upstream 36117 46152853 ~ 46155952 (-)

Expression


Co-expression Network