G2038798


Basic Information

Item Value
gene id G2038798
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 167388 ~ 202116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2332454
accgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatgagtttctgttacattttggcaagcagtgtctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggtggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagttacacaaacacagtttggcataaaatcttcctctacttctcagcttctcaagggcggaaacacttttaaaattgggtctaccgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaaaacctgttgatgccaggagttcctctagaggaacacctccccccccgttcagctcaaaccgtggcgcatggaacgcaaaaatattcttagaaatatttaacctccacacattaacaagtccaatagctcaaatgaaagataaacaccttgttcatctacccagcatgtcagattttttaaatgttttacggcgaaaacacaccacacatttatattagacc
>TU2332457
accgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctagaaatgccgttccaatatcaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagaaactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagcaccaacatgagtttctgttacattttggcaagcagtgtctattttgaccaatactgcaacaggttaaacaagattttagagtgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttatggtacagctgtttttgtaactgcattaccacgtgttttcaaccttcccaaacaacggtcgttttgaccactttcggagcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggtggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagttacacaaacatagtttggcataaaatcttcctctacttctcagcttctcaagggcggaaacacttttaaaattgggtctaccgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaataatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagttgaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggtggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagttacacaaacacagtttggcataaaatcttcctctacttctcagcttctcaagggcggaaacacttttaaaattgggtctaccgttctcgagggagagcgatttaagaaactcacctgctcttcactaacagctctctgtgtcaattctgatattccaaaacggaaccgttggctaggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttatactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacatccaagtgacattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaaaacctgttgatgccaggagttcctctagaggaacacctccccccccgttcagctcaaaccgtggcgcatggaacgcaaaaatattcttagaaatatttaacctccacacattaacaagtccaatagctcaaatgaaagataaacaccttgttcatctacccagcatgtcagattttttaaatgttttacggcgaaaacacaccacacatttatattagacc
>TU2332450
ggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttacactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacatccaagtggcattctttgtaagtgaaatcaagcaatttttgacacaaatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagttgaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacggaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaacgttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaagggtggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctg
>TU2332459
ggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttacactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacagccaagtgacattctttgtaagtgaaatcaagcaatttttgacacatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacagaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaaggatggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagt
>TU2332453
ggatactcgcagacgctgcagggccaaaatcatgaggagacactcctcctacaccgtttaagctagaaatgacgttccaataccaacaaattcgcaacggtctcgatcaagttgtttgtatagaatatttgatatctgttacactgtttccgtttttcactttcttgtcctctttatgtcctccttccgctttcattggatctctcaagtgactcaagtgccccattgtgacatcctcacagccaagtgacattctttgtaagtgaaatcaagcaatttttgacacatcagctaataaatccactttgcaaccacttagacaagacatgtcaagtgttccagcttcgtctacttctctgctactcaaatctggagtttggaggcaaatatgatattcgcatcaaaagttacaggagtttaagtaacagaaccaacatgagtttctgttacattttggcaagcagtggctattttgaccaatactgcaacaggttaaacaagattttagagcgaatgggatattcgtctacttctctgctattcatagctgtgtgcagaatcaaaatattccatacagaacttacggtacagctgtttttgtaactgcattaccacgtgttttcaaacttcccaaacaacggtcgttttgaccactttctgatcatttttgaggaaaaaagttccacaagctaaaatcttcccctgcttctctgctcttcatagaaaaggatggatttcaaatcggggctaccaatctgtaactatagccgttttcgtaacccatcgcctcactttcaagtgtctgtaaatcatgccagcagcaaggcaatttattactttcccaaacaactatcgttttgaccactaaacaaacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2332454 False 1856 lncRNA 0.41 2 167388 202116
TU2332457 False 2910 lncRNA 0.41 3 167388 202116
TU2332450 False 807 lncRNA 0.41 2 182055 190233
TU2332459 False 877 lncRNA 0.40 2 183037 190233
TU2332453 True 877 lncRNA 0.40 2 187249 190233

Neighbor

gene id symbol gene type direction distance location
LOC110507290 LOC106580666 coding upstream 16199 218315 ~ 305904 (-)
LOC110507294 LOC106580668 coding upstream 253936 456052 ~ 470573 (-)
LOC110507295 LOC106580669 coding upstream 285106 487222 ~ 495836 (-)
LOC118944766 NA coding upstream 319203 521319 ~ 523145 (-)
LOC110507297 LOC106580671 coding upstream 493075 695191 ~ 731585 (-)
G2038795 NA non-coding downstream 32119 134981 ~ 135269 (-)
G2038793 NA non-coding downstream 42888 124270 ~ 124500 (-)
G2038501 NA non-coding downstream 125009 37589 ~ 42379 (-)
G2038808 NA non-coding upstream 7990 210106 ~ 210577 (-)
G2038809 NA non-coding upstream 8471 210587 ~ 211311 (-)
G2038909 LOC106580667 non-coding upstream 220931 423047 ~ 426644 (-)
G2039032 NA non-coding upstream 409702 611818 ~ 612167 (-)
G2039458 NA non-coding upstream 575660 777776 ~ 777993 (-)
LOC110507298 spcs2 other upstream 567858 769005 ~ 776178 (-)
G2041883 NA other upstream 2693460 2895576 ~ 2896391 (-)
G2041885 NA other upstream 2696871 2898987 ~ 2899388 (-)
G2042608 NA other upstream 3198463 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 3337068 3539029 ~ 3718487 (-)

Expression


Co-expression Network