G2038909 (LOC106580667)


Basic Information

Item Value
gene id G2038909
gene name LOC106580667
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 423047 ~ 426644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2332578
catctttATTTCAAATTTGTTCTCATAAGGCATCTGTACAAAGCACAGTTCCCATAGGTGTGTAAAAACCTCTTCCCTTAGATGTTGGACAGGTAGGTTTAATTACAAGccaatatatttttgttcatttttcaTCCTTAAATGTATTCTCTTAAACAATAATCTTAAATTACAGCTATTCATTATTTCTTCGTTTGATTTCTTACAGCGTTCAGACAGTGAGCTAAAGACAGAAACAGTGTTTATAGCCATCAAGTATGTACATACAGaaacaacacatcacacacagCAAACTGCACAGCACTACGGGATACCACATCAATTCAATGCTCCAAATACAGCTATATACAGGTCCATACTATGGCACGATGTCGCTACATCACCACTGACTTTATTGgaggtgagaggtgtgtgtgtatttgtgtgtgtgtttgaggggggATTCAAATTGTTAGTTTATTGTATTTCCCTTTTCATGGTGTGATGAAGGGCCAAGAGGGGGGCTGGCAGGTGGAGGAGTCAGTGACATATGATAGGGGATGGGGATTTAAAAACGAATATAAGGAGCACACCACCATGCTACCGTAGCTTCCCCTGATCCACCCCTCCAGTAGCCAAGGGGGCAGGGCCTGGTCCTGGCCGGATGGAGGGGGGAAGTGGATTGAGGAGGACGGTTCAGTGGAGATGGGTGAGGGCATTGATTACACGTAAAGACGGCATTGTGCAGCTCTAGTGGTTTTCCTGAACCACTACTCGACCACTTTGACCCTGAATGTGACGCGCCCCAGGAACTTGTCGCGGTCGTCACTATTCCGCAGGTCGGAGCCCTCGATCTTACACTCCATGGTCAGCTCATTGTTGTAGTCTTCCTTGGTCAGCAGAAGCTTGACCGCAACCAGGGGCTGAACGTAGGTTGAATGCAAATTCTTCCCGTAATAAGGGAAGTACATCTTATCGAAACGCCCCTCGGATGGGAAGTACTGCATCTGCAGGGggctttctctCTTAGCTGTGCAGTTAATGTAGGGGTCCCCGCGCGGTTTCAGTCCAATGATCCTGTTCATCTTGACTAGGACGCAGGGTTTGCCCTCAGCGTAGCCAAAGGTGGTGTCAGACAGGCCGGAGCACTGCCGGAGCAGATTGCGCTTGAACTGACACACCTTCTTCTCCTCCTGATCATCCTGCTCATAGTACTCTCCCACCATACACAGCTCGTTCTTCTCCTGCACAGTGTCGT

Function

NR:

description
sodium/potassium-transporting ATPase subunit beta-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2332578 True 1237 lncRNA 0.47 4 423047 426644

Neighbor

gene id symbol gene type direction distance location
LOC110507290 LOC106580666 coding downstream 117143 218315 ~ 305904 (-)
LOC110507294 LOC106580668 coding upstream 29408 456052 ~ 470573 (-)
LOC110507295 LOC106580669 coding upstream 60578 487222 ~ 495836 (-)
LOC118944766 NA coding upstream 94675 521319 ~ 523145 (-)
LOC110507297 LOC106580671 coding upstream 268547 695191 ~ 731585 (-)
LOC110507298 spcs2 coding upstream 342361 769005 ~ 776178 (-)
G2038809 NA non-coding downstream 211736 210587 ~ 211311 (-)
G2038808 NA non-coding downstream 212470 210106 ~ 210577 (-)
G2038798 NA non-coding downstream 220931 167388 ~ 202116 (-)
G2038795 NA non-coding downstream 287778 134981 ~ 135269 (-)
G2038793 NA non-coding downstream 298547 124270 ~ 124500 (-)
G2039032 NA non-coding upstream 185174 611818 ~ 612167 (-)
G2039458 NA non-coding upstream 351132 777776 ~ 777993 (-)
defb4 NA non-coding upstream 387823 814467 ~ 816586 (-)
G2039501 rhbdd1 non-coding upstream 422308 848952 ~ 861381 (-)
G2039625 NA non-coding upstream 635175 1061819 ~ 1093191 (-)
G2041883 NA other upstream 2468932 2895576 ~ 2896391 (-)
G2041885 NA other upstream 2472343 2898987 ~ 2899388 (-)
G2042608 NA other upstream 2973935 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 3112540 3539029 ~ 3718487 (-)

Expression


Co-expression Network