G2039501 (rhbdd1)


Basic Information

Item Value
gene id G2039501
gene name rhbdd1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 848952 ~ 861381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2333259
GCCGACTGCACACTCTAAGTTGTAAGAGGGGTCCTGGGTAATCTCCGAGAGCACCATCTCCAGCAGCAGATAAATCACGCCCGTCAGCAGGGAGAAAACAGTCAGAAGCCAGGCGTAGAAGCTGCTGCCAAGCCGGGGCTCCAACTTGACGCCCTTCCACAGGAAGGATGCCATGTTGAAGTACAGGTGCCAGTCGTCTAGGTGGTGCAGCGGCGACAGCACGAGGCGGCGCCAGTCACCACGCCAGTAGGCCTGCTGGACGCTGATGCAGGCCTGGAGGAGGGGTAAGCTGGGTACCAGAAAGAGGTAGACGTTAAGGCCCAATACAGCCAGCGTCACAGGGGGAATGTTCTCCACCCCCACATGGAAGACCTGGGAGGCCAGGAGGATCAGACCCAGCTGACCTCCCCCCCTCTGTCGGTAACGCATCCTCCTCACTCAACTGCGGTAGCTCAGCCTGGAGtgacacacaaacTTCCTGGTACCGCGCAGACAGTATTTGAATATATCGCTGGTATTGTTGGTCTCTCTGTCTTCTGGCCGACAAAAACACTTATTAAAGACGATTAAGGGATATTGGTGTTTACCTACACTTAATCATACACGGTAAACTTTTCATGAAATGTCAGGTGAATAGACCAAGTGATGATAACAGATTCGTTTGGTGCACACTGTACAGA
>TU2333271
CAGTGTTTAACACAATGCATATATTTAATATAAATGTTCCAAAAATACATTGTTTAACAAACAAGATTATTTTAAGAAATACATCATATTACTCTCATGTTAAATTGCGAGTTCATTCTCAGATTCCCTCTAGAGCAAAATGTATCATAGTTCCCAGATCTCTAAAATTGCTGTTTCATATTTGCCAAGAGACAGAAACAGTATATTTGGTAATCCTATTATTACATTCAAATACTACAGGACTAAAAATCTTAATTGATAGTTGAAAATAATTAAATAGTAGCCCAATACATACGGTAAGAGCTCAATGGCACGCCAACCGTGGGGGATCGATAGCACAAGTCATTGGCACCCATTCAATAAAGTTGACACTACAAAGTGAACATGTCAAATCAATGTGGTTACTAAAACGTGATTTGGATACATTTGGCTGTTTTCACTGCATAATATTTATAAGTTTTCAAATAttcatttaaaatattttttaattataAAATGGCAAATTAAAATTCACCCCAACAACTATGAGAGTTGGAGCGCGAGGCTAAACTTCTCCTGTTCTGGTCCCTTGGCTACCACTTTGTAAGAGCGTTAAGCGAACCCGTGCACATgcacagatactgtgtgtgactgggtgaGAGCGAAATCTTGCATCTTGCTCATCGCAATATCTGAGGTACTGCCTTGTGCAACATTTCACTGATTCTACCTTTAACAGTGGACTGATGGACAAAATACTATAGTTTTTCAGTGTAGTATTCCTTGAGGAAAGATATTTTTATCCTCCAATGAACCAATAGTCCAGCTTGGTCAGTCAAAGTGGTCAATCCTCTGGAGCCGCCGCCTCCTGATCTCTTCTGCTGTCAGTTCTCCTGGAATGTTGAAACCATGCGAGGTTGGTCTTCTCTGAGTGGAGCCCCCTCTGCCATTGAGACTGGCTCTGATGGCTGCCTCGTACTGCTCATCCTCTGATAGACCTCCAGTGTAAGGGTGAACATTCTGGGGGTGCGCACGGGGTTCTCCACTACTGCCACTGTATCCTACAGAACTCCCCCCCACCACCCACACAAATACTAGGATTACCAAATATATCAGGCTCTTGGCAAGTATGCTTggtattacactgaacaaaaatataaatgcaacattttcatagattttactgcgttacagttcatatgaggaaatcagtcaattgaaataaattaggccATAAttgatggatttcacatgactgggaataaagttggtcacagataccataAAAATAaaagggcctcaggatctcatccctgtatttttgtgcattcaaattgccatggataaaatgctattgtgtttgttgtccgtagcttatttCTGCCCATACCAtcaccccacctccaccatggggcactctgttcacaatgttgacatcagcaaaccactcgcccacacgatCCCATACATGTGTTCTGCGGTTATGAGGTCGGTTGGAAGTAtgtccaaattctctaaaatgactttcATTATGGTAatggtaaattcactctggcaaaagctctggttgacattcctgaagtcagcatgacaattgcacgcatctcaaaacttgagacatctgtggcattgtgttgatgTGCAAGATGGCGCCAACAGACATGGCAgttctgcttctagctcctaagcaactttgcagtattttgtttttgttgtgtgtcatacatttttacaagcatttcgctacacccgcaataacttctgattaaaatgtgatttgatttatgtGACAGCAGttttagattggccttttattgtccccaacacgaggtgcacctgtgtaatgatcatgaggtttgatatgccacacatgtcaggtggatggattatcttggtaaaggagaaatgctcactaacaggaatgtaaaccaATTTGTACTCAAGATctgagagaaatacactttttgtgctTATAAAAATgttctggtatcttttatttccactcattaaacatgggacatacatgttgcatttatatttttgttcagtgtatattgcaGACACAAACAAAAATAATCTAGACTCTGCCCATTGTGGAAGCGAGACATCAATAAATCAAGGTGCAAAATGATTAGACATATGTAGCTACATACCTGAAAAGTTATAATATGGATTTTGTCTGGCATGGTATCCATTCATCACAAATCCTGCAATTGTTCTCATGATGATCTTCAAAGGACCAGCGGTGTAGAGAAGCCCCACCAGGATGCCTGCCAGGTGTCCCACAAAGGAGGTCCCCGGTGACGTTACATGAATCAGCACCAGCTCAACCCAGCTGGCGTAGCGATTGGCCACTGGGACGCCCATCACGTAGGAGACACCTCCCGGGTGGTAGTGGTTACTCAGCACTTTCAGAGCAAAAAGCACTCcTGAGAAGCCGACTGCACACTCTAAGTTGTAAGAGGGGTCCTGGGTAATCTCCGAGAGCACCATCTCCAGCAGCAGATAAATCACGCCCGTCAGCAGGGAGAAAACAGTCAGAAGCCAGGCGTAGAAGCTGCTGCCAAGCCGGGGCTCCAACTTGACGCCCTTCCACAGGAAGGATGCCATGTTGAAGTACAGGTGCCAGTCGTCTAGGTGGTGCAGCGGCGACAGCACGAGGCGGCGCCAGTCACCACGCCAGTAGGCCTGCTGGACGCTGATGCAGGCCTGGAGGAGGGGTAAGCTGGGTACCAGAAAGAGGTAGACGTTAAGGCCCAATACAGCCAGCGTCACAGGGGGAATGTTCTCCACCCCCACATGGAAGACCTGGGAGGCCAGGAGGATCAGACCCAGCTGACCTCCCCCCCTCTGTCGGTAACGCATCCTCCTCACTCAACTGCGGTAG
>TU2333264
CAGTGTTTAACACAATGCATATATTTAATATAAATGTTCCAAAAATACATTGTTTAACAAACAAGATTATTTTAAGAAATACATCATATTACTCTCATGTTAAATTGCGAGTTCATTCTCAGATTCCCTCTAGAGCAAAATGTATCATAGTTCCCAGATCTCTAAAATTGCTGTTTCATATTTGCCAAGAGACAGAAACAGTATATTTGGTAATCCTATTATTACATTCAAATACTACAGGACTAAAAATCTTAATTGATAGTTGAAAATAATTAAATAGTAGCCCAATACATACGGTAAGAGCTCAATGGCACGCCAACCGTGGGGGATCGATAGCACAAGTCATTGGCACCCATTCAATAAAGTTGACACTACAAAGTGAACATGTCAAATCAATGTGGTTACTAAAACGTGATTTGGATACATTTGGCTGTTTTCACTGCATAATATTTATAAGTTTTCAAATAttcatttaaaatattttttaattataAAATGGCAAATTAAAATTCACCCCAACAACTATGAGAGTTGGAGCGCGAGGCTAAACTTCTCCTGTTCTGGTCCCTTGGCTACCACTTTGTAAGAGCGTTAAGCGAACCCGTGCACATgcacagatactgtgtgtgactgggtgaGAGCGAAATCTTGCATCTTGCTCATCGCAATATCTGAGGTACTGCCTTGTGCAACATTTCACTGATTCTACCTTTAACAGTGGACTGATGGACAAAATACTATAGTTTTTCAGTGTAGTATTCCTTGAGGAAAGATATTTTTATCCTCCAATGAACCAATAGTCCAGCTTGGTCAGTCAAAGTGGTCAATCCTCTGGAGCCGCCGCCTCCTGATCTCTTCTGCTGTCAGTTCTCCTGGAATGTTGAAACCATGCGAGGTTGGTCTTCTCTGAGTGGAGCCCCTCTGCCATTGAGACTGGCTCTGATGGCTGCCTCGTACTGCTCATCCTCTGATAGACCTCCAGTGTAAGGGTGAACATTCTGGGGGTGCGCACGGGGTTCTCCACTACTGCCACTGTATCCTACAGAACTCCCCCCCACCACCCACACAAATACTAGGATTACCAAATATATCAGGCTCTTGGCAAGTATGCTTggtattacactgaacaaaaatataaatgcaacattttcatagattttactgcgttacagttcatatgaggaaatcagtcaattgaaataaattaggccATAAttgatggatttcacatgactgggaataaagttggtcacagataccataAAAATAaaagggcctcaggatctcatccctgtatttttgtgcattcaaattgccatggataaaatgctattgtgtttgttgtccgtagcttatttCTGCCCATACCAtcaccccacctccaccatggggcactctgttcacaatgttgacatcagcaaaccactcgcccacacgatCCCATACATGTGTTCTGCGGTTATGAGGTCGGTTGGAAGTAtgtccaaattctctaaaatgactttcATTATGGTAatggtaaattcactctggcaaaagctctggttgacattcctgaagtcagcatgacaattgcacgcatctcaaaacttgagacatctgtggcattgtgttgatgTGCAAGATGGCGCCAACAGACATGGCAgttctgcttctagctcctaagcaactttgcagtattttgtttttgttgtgtgtcatacatttttacaagcatttcgctacacccgcaataacttctgattaaaatgtgatttgatttatgtGACAGCAGttttagattggccttttattgtccccaacacgaggtgcacctgtgtaatgatcatgaggtttgatatgccacacatgtcaggtggatggattatcttggtaaaggagaaatgctcactaacaggaatgtaaaccaATTTGTACTCAAGATctgagagaaatacactttttgtgctTATAAAAATgttctggtatcttttatttccactcattaaacatgggacatacatgttgcatttatatttttgttcagtgtatattgcaGACACAAACAAAAATAATCTAGACTCTGCCCATTGTGGAAGCGAGACATCAATAAATCAAGGTGCAAAATGATTAGACATATGTAGCTACATACCTGAAAAGTTATAATATGGATTTTGTCTGGCATGGTATCCATT

Function

symbol description
rhbdd1 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD1 (rhomboid domain containing 1).

NR:

description
rhomboid-related protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2333259 False 680 lncRNA 0.54 2 848952 851621
TU2333271 False 2866 lncRNA 0.44 5 851171 861381
TU2333264 True 2174 lncRNA 0.39 2 858151 861381

Neighbor

gene id symbol gene type direction distance location
defb4 NA coding downstream 32461 814467 ~ 816586 (-)
LOC110507299 LOC106580672 coding downstream 49706 787157 ~ 799246 (-)
LOC110507298 spcs2 coding downstream 72774 769005 ~ 776178 (-)
LOC110507297 LOC106580671 coding downstream 117367 695191 ~ 731585 (-)
LOC118944766 NA coding downstream 325807 521319 ~ 523145 (-)
col4a4 LOC106579782 coding upstream 117 861498 ~ 1020971 (-)
ostn ostn coding upstream 330896 1192277 ~ 1232835 (-)
LOC110507040 il-1racp coding upstream 459595 1320976 ~ 1343406 (-)
LOC110507309 fgf12 coding upstream 546806 1408187 ~ 1547213 (-)
LOC110507311 mb21d2 coding upstream 696557 1557938 ~ 1580617 (-)
G2039458 NA non-coding downstream 70959 777776 ~ 777993 (-)
G2039032 NA non-coding downstream 236785 611818 ~ 612167 (-)
G2038909 LOC106580667 non-coding downstream 422308 423047 ~ 426644 (-)
G2038809 NA non-coding downstream 637641 210587 ~ 211311 (-)
G2039625 NA non-coding upstream 200438 1061819 ~ 1093191 (-)
G2039669 NA non-coding upstream 241719 1103100 ~ 1103454 (-)
G2039670 NA non-coding upstream 242287 1103668 ~ 1103883 (-)
G2039676 NA non-coding upstream 249916 1111297 ~ 1111564 (-)
G2039683 NA non-coding upstream 260270 1121651 ~ 1121861 (-)
G2041883 NA other upstream 2034195 2895576 ~ 2896391 (-)
G2041885 NA other upstream 2037606 2898987 ~ 2899388 (-)
G2042608 NA other upstream 2539198 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 2677803 3539029 ~ 3718487 (-)
G2043460 NA other upstream 3482218 4343599 ~ 4348409 (-)

Expression


Co-expression Network