G2041184


Basic Information

Item Value
gene id G2041184
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 1770517 ~ 1773046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335118
CCAGATCGAGCTACCAATATCTGCAGACAGCACTTCGCGGAAGCAGACTTCGTGGTGAAGGGCACTTTCGAGGGCTATGGTGTAGCTGTTACTGACCGATTATCATCAACATCGCAAAGCAAAAGCGACTGGACGAAGGAGGCGACGCGAGTCAATGCAATGGAGCCTAAGGATAACATCTTCATCCATGAAAAGGTGTTCATCCTGGAGGAGACTGTGCAGGAGGCAGAGGAAAAAACAGTTAATACAGCATGCCAAACTGGCCCCTGGGTGCCAGACTGTTCCTGTGCTGCGGTGGAGAAGAGGTCCAccgggaccatcactaaagagcTCGGGGCCCAGCTAGATTGAGCTAACGACCATCAATATACAACCGAGTCCTGCCCTATATGTCACAGATGGAGAGTGAGATCAGTGAAGACCATAACTCGCTGTAGGAACCTGAGAGCTCAGAATCACAATCATCACAGTGCAAGTCAAGATATACTATCGATCACTTTGGGGGAGTGGGCTGGTGATCCGAAAATGGAGAAGGAGCAGGCCATTCAACAGCGAATTCAAAGATCCATCCACCGGAGTGGAGTTATTTTTCAcagattttttttacccattCAATGGatatgctaccttgtcccggtcctgctgttttgaCTATCTCTCTCAACCTATGAATgttcagctatgaaaagccaacagaCATTTGCTCCTGAGGTGTTGATCTGTTGCACACTCTATAACGAGTGTGGTTATTATTTtcatgtaaaaagggcttttgtaaaatacatttgattgtttGTGGTGCTGGATGCTGTGTATTCACCAACTGTCTGAGTGATGGGAAATGTATATACTATCTGTAACATATTTTGGTGTGTATTTAATCTGCATCTCAACTTCTTAATGTGGCAATCAGCAATATAAACAATAGTTTCTCCCTGCTCCTCTttgggtaaaaagctgagggatgggtctgaagaaatgtaaccactctcaaatgcatagacagagctatagaggtaaggactgaccatccattatatcaAAATTATAATCCTGTTTCTATGATCCGTTTCCACTACCATGTACCCAGTTCGCTTTGGATAaaggcgtctgctaaatggcatataaccgactgttccccggtaggccatcattgtaaataagaatttgttcttaactgacttgcttagttaaatagaataaaatatatatatattattaaagtCTACTTTGACTCTGCCAATTAGCTGCCCAGTGTAGT
>TU2335116
CCAGATCGAGCTACCAATATCTGCAGACAGCACTTCGCGGAAGCAGACTTCGTGGTGAAGGGCACTTTCGAGGGCTATGGTGTAGCTGTTACTGACCGATTATCATCAACATCGCAAAGCAAAAGCGACTGGACGAAGGAGGCGACGCGAGTCAATGCAATGGAGCCTAAGGATAACATCTTCATCCATGAAAAGGTGTTCATCCTGGAGGAGACTGTGCAGGAGGCAGAGGAAAAAACAGTTAATACAGCATGCCAAACTGGCCCCTGGGTGCCAGACTGTTCCTGTGCTGCGGTGGAGAAGAGGTCCAccgggaccatcactaaagagcTCGGGGCCCAGCTAGATTGAGCTAACGACCATCAATATACAACCGAGTCCTGCCCTATATGTCACAGATGGAGAGTGAGATCAGTGAAGACCATAACTCGCTGTAGGAACCTGAGAGCTCAGAATCACAATCATCACAGTGCAAGTCAAGATATACTATCGATCACTTTGGGGGAGTGGGCTGGTGATCCGAAAATGGAGAAGGAGCAGGCCATTCAACAGCGAATTCAAAGATCCATCCACCGGAGTGGAGTTATTTTTCAcagattttttttacccattCAATGGatatgctaccttgtcccggtcctgctgttttgaCTATCTCTCTCAACCTATGAATgttcagctatgaaaagccaacagaCATTTGCTCCTGAGGTGTTGATCTGTTGCACACTCTATAACGAGTGTGGTTATTATTTtcatgtaaaaagggcttttgtaaaatacatttgattgtttGTGGTGCTGGATGCTGTGTATTCACCAACTGTCTGAGTGATGGGAAATGTATATACTATCTGTAACATATTTTGGTGTGTATTTAATCTGCATCTCAACTTCTTAATGTGGCAATCAGCAATATAAACAATAGTTTCTCCCTGCTCCTCTttgggtaaaaagctgagggatgggtctgaagaaatgtaaccactctcaaatgcatagacagagctatagaggtaaggactgaccatccattatatcaAAATTATAATCCTGTTTCTATGATCCGTTTCCACTACCATGTACCCAGTTCGCTTTGGATAaaggcgtctgctaaatggcatataaccgactgttccccggtaggccatcattgtaaataagaatttgt
>TU2335114
CCAGATCGAGCTACCAATATCTGCAGACAGCACTTCGCGGAAGCAGACTTCGTGGTGAAGGGCACTTTCGAGGGCTATGGTGTAGCTGTTACTGACCGATTATCATCAACATCGCAAAGCAAAAGCGACTGGACGAAGGAGGCGACGCGAGTCAATGCAATGGAGCCTAAGGATAACATCTTCATCCATGAAAAGGTGTTCATCCTGGAGGAGACTGTGCAGGAGGCAGAGGAAAAAACAGTTAATACAGCATGCCAAACTGGCCCCTGGGTGCCAGACTGTTCCTGTGCTGCGGTGGAGAAGAGGTCCAccgggaccatcactaaagagcTCGGGGCCCAGCTAGATTGAGCTAACGACCATCAATATACAACCGAGTCCTGCCCTATATGTCACAGATGGAGAGTGAGATCAGTGAAGACCATAACTCGCTGTAGGAACCTGAGAGCTCAGAATCACAATCATCACAGTGCAAGTCAAGATATACTATCGATCACTTTGGGGGAGTGGGCTGGTGATCCGAAAATGGAGAAGGAGCAGGCCATTCAACAGCGAATTCAAAGATCCATCCACCGGAGTGGAGTTATTTTTCAcagattttttttacccattCAATGGatatgctaccttgtcccggtcctgctgttttgaCTATCTCTCTCAACCTATGAATgttcagctatgaaaagccaacagaCATTTGCTCCTGAGGTGTTGATCTGTTGCACACTCTATAACGAGTGTGGTTATTATTTtcatgtaaaaagggcttttgtaaaatacatttgattgtttGTGGTGCTGGATGCTGTGTATTCACCAACTGTCTGAGTGATGGGAAATGTATATACTATCTGTAACATATTTTGGTGTGTATTTAATCTGCATCTCAACTTCTTAATGTGGCAATCAGCAATATAAACAATAGTTTCTCCCTGCTCCTCTttgggtaaaaagctgagggatgggtctgaagaaatgtaaccactctcaaatgcatagacagagctatagaggtaaggactgaccatccattatatcaAAATTATAATCCTGTTTCTATGATCCGTTTCCA
>TU2335132
AGCTGCCCAAGGAGCCGCAACTTTTGAAGAAGAAGGACGTGCCAGATCGAGCTACCAATATCTGCAGACAGCACTTCGCGGAAGCAGACTTCGTGGTGAAGGGCACTTTCGAGGGCTATGGTGTAGCTGTTACTGACCGATTATCATCAACATCGCAAAGCAAAAGCGACTGGACGAAGGAGGCGACGCGAGTCAATGCAATGGAGCCTAAGGATAACATCTTCATCCATGAAAAGGTGTTCATCCTGGAGGAGACTGTGCAGGAGGCAGAGGAAAAAACAGTTAATACAGCATGCCAAACTGGCCCCTGGGTGCCAGACTGTTCCTGTGCTGCGGTGGAGAAGAGGTCCAccgggaccatcactaaagagcTCGGGGCCCAGCTAGATTGAGCTAACGACCATCAATATACAACCGAGTCCTGCCCTATATGTCACAGATGGAGAGTGAGATCAGTGAAGACCATAACTCGCTGTAGGAACCTGAGAGCTCAGAATCACAATCATCACAGTGCAAGTCAAGATATACTATCGATCACTTTGGGGGAGTGGGCTGGTGATCCGAAAATGGAGAAGGAGCAGGCCATTCAACAGCGAATTCAAAGATCCATCCACCGGAGTGGAGTTATTTTTCAcagattttttttacccattCAATGGatatgctaccttgtcccggtcctgctgttttgaCTATCTCTCTCAACCTATGAATgttcagctatgaaaagccaacagaCATTTGCTCCTGAGGTGTTGATCTGTTGCACACTCTATAACGAGTGTGGTTATTATTTtcatgtaaaaagggcttttgtaaaatacatttgattgtttGTGGTGCTGGATGCTGTGTATTCACCAACTGTCTGAGTGATGGGAAATGTATATACTATCTGTAACATATTTTGGTGTGTATTTAATCTGCATCTCAACTTCTTAATGTGGCAATCAGCAATATAAACAATAGTTTCTCCCTGCTCCTCTttgggtaaaaagctgagggatgggtctgaagaaatgtaaccactctcaaatgcatagacagagctatagaggtaaggactgaccatccattatatcaAAATTATAATCCTGTTTCTATGATCCGTTTCCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106565277 isoform X4

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335118 False 1261 lncRNA 0.43 3 1770517 1773005
TU2335116 False 1171 lncRNA 0.44 3 1770607 1773005
TU2335114 False 1075 lncRNA 0.44 3 1770703 1773005
TU2335132 True 1116 lncRNA 0.45 3 1770703 1773046

Neighbor

gene id symbol gene type direction distance location
LOC110507311 mb21d2 coding downstream 189900 1557938 ~ 1580617 (-)
LOC110507309 fgf12 coding downstream 223304 1408187 ~ 1547213 (-)
LOC110507040 il-1racp coding downstream 427111 1320976 ~ 1343406 (-)
ostn ostn coding downstream 537682 1192277 ~ 1232835 (-)
col4a4 LOC106579782 coding downstream 749546 861498 ~ 1020971 (-)
LOC110507317 LOC106580633 coding upstream 75729 1848775 ~ 1875484 (-)
zgc:162872 LOC106580634 coding upstream 104622 1877668 ~ 1890486 (-)
trmt9b LOC106580636 coding upstream 133292 1906338 ~ 1933706 (-)
n4bp2l2 LOC106580637 coding upstream 164781 1937827 ~ 1966651 (-)
LOC110507323 NA coding upstream 204036 1977082 ~ 2171787 (-)
G2040968 NA non-coding downstream 213461 1556755 ~ 1557056 (-)
G2040967 NA non-coding downstream 214045 1556215 ~ 1556472 (-)
G2040985 NA non-coding downstream 273372 1441941 ~ 1497145 (-)
G2040983 NA non-coding downstream 331246 1436322 ~ 1439271 (-)
G2041256 NA non-coding upstream 126955 1900001 ~ 1900211 (-)
G2041258 NA non-coding upstream 128522 1901568 ~ 1901788 (-)
G2041498 NA non-coding upstream 508794 2281840 ~ 2297659 (-)
LOC110507298 spcs2 other downstream 999780 769005 ~ 776178 (-)
G2041883 NA other upstream 1122530 2895576 ~ 2896391 (-)
G2041885 NA other upstream 1125941 2898987 ~ 2899388 (-)
G2042608 NA other upstream 1627533 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 1766138 3539029 ~ 3718487 (-)
G2043460 NA other upstream 2570553 4343599 ~ 4348409 (-)

Expression


Co-expression Network