G2041626 (LOC106612439)


Basic Information

Item Value
gene id G2041626
gene name LOC106612439
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2496500 ~ 2498329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335605
CTTTATTTAAGACATTCCTGAATGTCAGCTGCAATTAGAGTGGTATTCAAAGAACAATAAAAAGACCTTGTGACAAACATGAAAAAATATTCTTTCAAACaaatacagaaaaaaaaaaaaacactagctaCCAACCCAGAAATCTGATTTGAGAGTTGCACACCTATTACTTCCATATTGATTCATAATCCTCCAAAGCAGTCACAGGCAAGGGcaggaacaacaacaaaaatatcagAACATCAAATTCAAGACATGTAGTGTTAACTTTAAGGGAGCATAACACCATCCATCTTAAGAACATTAAATATACACACATCCTAATGTGTTCTCGTTGCATCTGGGTCTGTTCAGAGATGTAAGGTGTGTACAATAGTTACATAGCATTAAAACAAGTATGTAGGCTACAACAGCAGAGAGGCTACTCgtcatcatcctcatcctcatcgtCATCTTCCTCATCATCCTCTTCTTCGTCGTCAGCAGCTGCGGAGGAGGCCGTATCCACTCTACCATTGGTGCGGTATGAGGCGATATCCTTGTCGTATTTCTCCTTCAGCGTGGCAGCCTTCTTCTCGTACGGCTTCTTCTCCTCAGCTGCAGAGCTGTTCCACATCACTCCCAGCTTCTTAGCAGTGTCTCCAATGGACAGGCCTGGGTGCTCGCTCTTTATCTTGGCCCGGAAGTCAGCACAGAAGATGAAGAACGCAGACCTGAGAAACAAAAACAAACGCATGTCAATTCAAAGGGAAGTTTAATTCACCTTTATAATTGCTATCCAGTCTAGCTGCCATGCAAACCTACGGTGGTCTCTTGGGGGCATTAGGATCCTTGAACCTCTTCTTTTTCTGGCCATTGGGTGGGATGTAGTTCTTCATTTCTCTCTCGTAGCGGACCTTGTCTTGCTTCGCCATGTCTTCAAACTTGCCTTTTTCTTTAGGAGACATGGGCTAGATATAGAGGTATAAATTCAGATTACATATCTACATGGCCACCGCTAGACTGTCCACAAGGTCACTCAAGTGTAACAAAACATACTATGGTGGAAATATAGCCATAATCATATACCAGAAACATGTCACGTCACATTCATTCACTGTTGTGTAATGCTACCTTCCATCGCTCTGAGCATTTCTTGGAGAACTCAGCGAAGTTGACACTGGCTTCGGGGTGTTTCTTCTTGTGCTCCGCCCTGCAGGTCTGCACGAAGTAAGCATATGACGACATCTTGCCTCTCGGTTTCCTAGGATCTTTCCCCATGGTGACTTGTGTAGGTCTaggagagatacagtagatacagtttCAAAAACATAAAGCCAAATTTGTCACCCTGAGCTTTGGCCATATTAAATGTGTGTCCCTCCCTAGCTGCCCATAACAAATAATGGGGGCTGGGGGTACACGACCTTTCTTGCAAATAAACATTTGTAATCACTAATAATGCTAACTAAATGCAAA

Function

NR:

description
PREDICTED: high mobility group-T protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335605 True 1458 lncRNA 0.43 2 2496500 2498329

Neighbor

gene id symbol gene type direction distance location
wdr95 LOC106580697 coding downstream 31022 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 90282 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 324713 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 529849 1937827 ~ 1966651 (-)
trmt9b LOC106580636 coding downstream 562794 1906338 ~ 1933706 (-)
LOC110507328 LOC106580643 coding upstream 20384 2518713 ~ 2542284 (-)
LOC110507043 LOC106603827 coding upstream 438199 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 447593 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 458311 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 739072 3237401 ~ 3240233 (-)
G2041613 NA non-coding downstream 800 2480646 ~ 2495700 (-)
G2041498 NA non-coding downstream 198841 2281840 ~ 2297659 (-)
G2041258 NA non-coding downstream 594712 1901568 ~ 1901788 (-)
G2041710 NA non-coding upstream 129718 2628047 ~ 2628375 (-)
G2041725 LOC106584099 non-coding upstream 151165 2649494 ~ 2655785 (-)
G2041724 LOC106612432 non-coding upstream 171974 2670303 ~ 2685780 (-)
G2041737 NA non-coding upstream 180330 2678659 ~ 2679463 (-)
G2041752 LOC106612343 non-coding upstream 206042 2704371 ~ 2709010 (-)
LOC110507298 spcs2 other downstream 1725763 769005 ~ 776178 (-)
G2041883 NA other upstream 397247 2895576 ~ 2896391 (-)
G2041885 NA other upstream 400658 2898987 ~ 2899388 (-)
G2042608 NA other upstream 902250 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 1040855 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1845270 4343599 ~ 4348409 (-)

Expression


Co-expression Network