G2041725 (LOC106584099)


Basic Information

Item Value
gene id G2041725
gene name LOC106584099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2649494 ~ 2655785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335720
ACTTTTATTAATGCACTTGAACGataaatacaaatattaattCCAGAAAATAATTCAGTTTTCGGGGACAATTTCAGCAAACTGTAAAAATGTAAAGACCATGTTACGGTCATTAAAAAGGTCCTCTCTGTATGTGGGAAGTAGTACATACTTGTAAACAAATGGAATGCATCTATTTTACTGTACAAATGTCACATGGTCCAGACCCAGCAGTAGGGGCACATGATTTCTGCTGGAGAAAGTCCAAGTCAGGCAGGGGGGAAAAACACTCAAATATCTATACAAAACATTTATATTTATACACCTTTAACTTCCCTTTTCACAACTCAGTCTATCCAAAAGAAAGTTCATGGTAAAAACATACCAATGATATTTTTTTCCCTTCAGAAGCTATGTAGGCAGAATCCCAGCCTACATCGATGCACATCCTTACAGTAAAAGCTATGTAGGCTGCATAGAGATATTACCATTTTAACTTGATTTTCGATAGACTACGAGTTCTGAAAAGGGAGGCTGGGAATCTGCCAACAAGAGCCCATTCAATCAGTTGTCCTCGGGTCAGCCCTGACCAGTATTATTGTCAGCTCTGTGGCTAGcactccctcatccccctccctGGGAACGAGAGGTTGTGTCTGCCTCAGAACTAAGAGTCAGTCCGTTAACCTGTCTTTCTGTAGGTAACACTGCAACTGAAAATCTTTAGCAATGGATAACAAAAATGAaaatttcttattggacaaaaaCAGGTAGTCCCTGTTTTTTTATCTTCTGTTTGGCGCCTAATGAACAGACCAACTTATCAACGTGTGCAGCAAGAGCCACATTTGTGTCCATAAAAAAATGATTGAACCATACACTAAAAACAACTTGAGAATCGGAAGGGTGTCTTGAACACTGTCAATAGCAAAATCTATAGACCGCTTTTAATCTCATGCAAATTTAGCAACATGTAGTGATAAAAGATGAGTTCCGTGCATGATGCAGACAGTGTTCTATTCACTACTACTTGTCTATGGTCTCAACTCTCCATGTTGAACACAACTGTGAAGGTGATGAGGTGGTTTGTAAAAAAATACAAGAATAAAACAGACTTTTATTTTCTACAAAGTTAGTGTATGTTTAGCCCCAGACCCTGGCCGGCCCCAACCGCTCATCACTAGAGTGGACAATAATAAGTAAGAACCGTTACTTCAGGATAGAAACACGGAGACAAATGCAAAGGTGCAGGCTATGATGTCATGCTGTCAGTCAACCTGCCCATACATAGGCCCTTGATAAGAGACTTGATTGAGCTGCACTCAAGGAAGAACTTGCCTGTAAAcgctggtctaggatcagcttgAACCAATCCCACTCAAAACACAAACCTTTTAAGAGGCTTGTTTTCTTATAGAACTTTTTATTTGACTTGCCCTGGCACAGCACTTAGGGACAGTGTCTACGTACACCCTGGGGTGCGGTGTCCAATCCATGTAGCTACACGAGACTGCAACTCCTTGTGGCAAAACACATAAATTGAAGCTTTATATACGAGTGATTCTACAGAAGTGGTGCAAATTGCAGTCCCACCCCCCAAAaactatatatataaaaaaaatgttttatttacttcATGATATGTTGTATTTCAATCCAAGGCAATAACAAATATAGTTCAATTCATATAGTACAAAGTCATTTTTTATACACCTATTTCTATTGAGTTGGCTGTCATACACCGATTCCTAAACTTTTTATTATTTCAATAGAACATCTTGAATGGTTCTATTATTACATTGAAAGATACTGATCTAATTTGCACTAAACATCTTTCTATACAAAATGCTGTCCCACCTTTTGATGTCACTACCGAAACGCACACATTAAAAGACAATAGAATTAATGTACCTTAAGCCACACCCCTAAAAGTATCACCAGGTGATGGGATTGCACCCTTCTCCAGCATGGCCACATGGTGAGTAGTCCATCTGCAGACATTTTGGAGAAAATGAGTGAGCAAGTTGGTAAATCATCATCTATTTTGAATTAGTGTCATTAATTACATGTTTGGTGGGATGTACATCTGTCCAAATGAAAGAGAGCTATGGGGTTCTTTGAAGTCCGAATCAGTCACAACCAAAACAATTGAcaccatataaactcagcaaaaaaataaacgttctctcactgtcaactgtgtttattttcagctaaCTTaccacgtgtaaatatttgtatgaacataacacgaTTCAATAACAGacttaaactgaacaagttcaacagacatgtgactaacagaaatggaatgatGTGTCAaagaacaagggggggggggggggggtcaaaatcaaaagtaacagtcagtatttggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcatggactgcacaaaatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacctgcaagttcccggacatttctgagggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgctcgatgggattgagatccggactcttcgctggccatggcagaacactgacattccggtcttgcaggaaatcacgcacagaaagaGCTGTAtggttggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacatgagagaggaggatgtcttccctgtaacgcacagctttgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgacacaccgccacagaccatgacggaccctccgcctccaaatcgatcccgctccagagtacaggcctcggtgcaaCGCTCAACCCTTTGACGATAAACACAAATCttaccatcacccctggtgagacaaaaccgcgactcgtcagtgaagagcaccctttgccagtcctgtcttttccagcgacagtgggtttgtgcccataggctacGTTGTTGCCggggatgtctggtgaggatctgccttacaactggccaacaagccctcagtccagcctctctcagcctattgcggacagtctgagtactgattgaaggattgtgcattcctggtgtaactcgggcagctgttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccatcctgtctccctgtagagctgtCTTAGGCGTTTCACTGTacggacattacaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctcaggcacgttcacgcagatgagcagggaccttgggcatctttcttggtgtttttcagagtcagtagaaaagccTCTTTAGTATCCTACGTTTCcataactgtgatcttaattgcctaccgtctgtaagctgttagtgtcttaacgactgttacacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctgtgaagttatttggatttttacaaattatctttgaaagacagggtcctgaaaaagggatgtttataTAGAGTTCTCGTTTTTGTATCTATGCCATTATGGCATCtgacagcatgggcagtgccattgaggctatctccattttaaagttgCAAGCGGCATGCTCTGCCGACTGAGCTACAAGAGGACCACCATGTGGGTAGGGGACAAGTCCACACTTTATGAAAAAGTGTAGAGTATTAGGATGCATATCCAGCAGGGCGATCCAACCATCCAAGACCCCAAACATTAGCATCGATTTAGCcaaaacatagacgtctataatGTACTATGCTCTActgcaggggttcccaaactttttactcaggcccccttccagcattggggaacatctgTGGCACAAGAACATTACtgaaactgttcacacccctcttgttggctgagagaacattttgccATTTTAAATCCTATTTCCTGCAAATCAATAGTCTAAAAAACATTGCTAAAAtattttagctgacatgggctagttgatctggacatttctgacataGACAGCTCTCTAAGGTCTGCAACGACAAGAGAAACTGCTTTTGCACTATCCACTTTCAAAATGGCACCTTGTGCAATACACTACTACGACTTTAAGGAGTAAGTTGAAAGCCAGACTGAGATCCCCCCATAAAACACTTATTTGTCATCGTCTCAACTCACTGGGTCTGGATCTTGGGACCAATGTCCTGGTATAAATATCGGTCTTGGCTCCTTGATATTACTTTCGTCTTTGGTTTTCAATTTGAAGAAGACAATGCTGTCTGATCATTGGCTGAACTCCGAACCCATAGGAATACACACCCAGTTCActacttttaaatggttgaaGCCCTCAATAGCAACGTCTATACTAAAACAAATTATATCCATCGGAGTCCTCTATTGACACTGAAACAGGTTATTTTGTTAATTTGGTATGCAAATATTTCTCAAATGAATGTGTAATAAGGTTAATCAAAATTATCACTACTGTGCTGGTTCTCCCTTTTACACTGTGTTCCAGAAATGACATCTAGTGTTAAGGTAAAGATTTCAAATATGCAATACAAagtgtgagtagtgtgtgtgtgtgtgtatgtatatatatctcCCAGACATATGTTGGATGACGTGTGCAGAAAGTTTGGGGAAAATAGGATacaaatgcaattttttttccaACCCCCAATTTGCACCACTTCTGTATAATGACCcatatacactgtgtacaaaacatcaggaacacctctttccatgacagactgatcaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcaatcagtgtaaatgaaggaaggagacaggttaaataaggatttttaaaccttgagacaattgagacatggattgtgtatgtgtggctttcagagagtgaatgggcaagacaaaatatttaagtgcctttgaactgagtatggtagtagatgccaggcgcaccgatttgagtgtcaagaactgcaacgctgctgggtttttcatgctcaacagtttcccgtgtttatcaataatggttcaccacccaaaggacatccagctaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgcttttgacaccttttagagtccatgtcccaacgaattgaggctgatcTGAGGgtaaaaggggtgcaactcaatattaggaatgtgttcctaatgttttgttcactcagtatATATTTGTACACAACACTGTGAGAAAGAATAAAACAGAGATTCCCagagctccctctctctttctactccagCATCGCTTTTGAATCAGCTAGCTTGTGACTTGACCACACAATAAAAAAATGGAGAAGACGGGTTCATTTCATAACAGCCATTGTAAGTGTTGGCAGCATCAACGTGACTGTTGCTCACATGACTGTGTTACTTAGACAACCGACAAGTTCCTAGTCTCCGAACCCTTCCCCCTACCTGACCCCGCTGACCTGCAAGGATCTGACATGTGACAGTAAAATGAATATGAGAAATGAGatgcaataataatagtaatggTGTAAAATAAAACAATCCCTGGTGTACATCAGTaaaaggaggatggagagaaaagtGAGAGAAGACAACTGACTAATATTAGAAAAAAAAAGAACCCTCTTCCTTGCCGTCCAACTGACCGTTTGTCTGGAACAATCTtggttgtctgtctctctttagaGGCTGCAAGTCATAAGCAGTCTGTGTGGGGACACTGGGGGAAAGACAGTCAACCCTTTCTTTTACCTACttgtgttccctctctctctctccattgggGAAGACCTGTCTGGGAAGGCTGGGGTGCCCCTGTATGGCTGAGGAGGCTGGGGGAAAATGGGGTAGCATTTTTTAGGGTGTCTTCTCTTCACACCCTTGTGCCAGGGGTGGTCGAGAGGGAAAGTCATGTAACATACCctcggagagggagagagtgggtcCTGTGTCTGTCCATCCATGAGAGTGAATGTGGAACTCCGCTGCACTAAATTGCCAGAGGGGTAGTAATGGTCGTGGTGGGGGAAGTTGTGTGTTTGGGCGGGGCCAGCTCCAGGAGCGCACACACCGTCCCGGCCACCTGGGGGagccctctctcctccaggaTGTGGAGGGGCAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335720 True 6262 lncRNA 0.43 2 2649494 2655785

Neighbor

gene id symbol gene type direction distance location
LOC110507328 LOC106580643 coding downstream 107210 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 184016 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 243276 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 477707 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 682843 1937827 ~ 1966651 (-)
LOC110507043 LOC106603827 coding upstream 280743 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 290137 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 300855 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 581616 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 592025 3247810 ~ 3255113 (-)
G2041710 NA non-coding downstream 21119 2628047 ~ 2628375 (-)
G2041626 LOC106612439 non-coding downstream 151165 2496500 ~ 2498329 (-)
G2041613 NA non-coding downstream 153794 2480646 ~ 2495700 (-)
G2041498 NA non-coding downstream 351835 2281840 ~ 2297659 (-)
G2041724 LOC106612432 non-coding upstream 14518 2670303 ~ 2685780 (-)
G2041737 NA non-coding upstream 22874 2678659 ~ 2679463 (-)
G2041752 LOC106612343 non-coding upstream 48586 2704371 ~ 2709010 (-)
G2041777 LOC107758061 non-coding upstream 88321 2744106 ~ 2783787 (-)
G2041811 NA non-coding upstream 129356 2785141 ~ 2785362 (-)
LOC110507298 spcs2 other downstream 1878757 769005 ~ 776178 (-)
G2041883 NA other upstream 239791 2895576 ~ 2896391 (-)
G2041885 NA other upstream 243202 2898987 ~ 2899388 (-)
G2042608 NA other upstream 744794 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 883399 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1687814 4343599 ~ 4348409 (-)

Expression


Co-expression Network