G2041724 (LOC106612432)


Basic Information

Item Value
gene id G2041724
gene name LOC106612432
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2670303 ~ 2685780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335715
TGTCTGCTGGGTCTGGAATTAAACCTTGTGCTAATCATCAGCGAAGAACAGAAGAAGGTACCACTCACCACTCTGACTCTGTGTCCCATGGCTTTTGCTGGGAGGTTACTGCTGAACTTGGCCCGCACCATTCCACTGTTGCCATGAGCACGCATGACTTTGCCCCAGATTACCCGCGTCTTGTTGGGCTTGCCACCAGGAGTCACTGTGTTTTCTTAGCCTTGTAGACGTAAGCACAGCGCTTGCCTAGGTAGAAGTCAACCTCCTCCCGTGTGTACACTCCCTCCACCTTCAGCAGGGCGGTGTGCTCCCGCTGGTTCCTTAGGCCGCGCTTATACCCGGCAAAGATGGCCTTGCTCCACAGTCTTCCTGGCATCTTGAGTCTATTCCCAGGCACGGAAAAACCTGCACTGTAAGAAAAATGGAGGAAAAGGAAGTCGGAACGGAATGCTGGGAAATGTACGTAGTCGGTGACGACAGAGGCGCATGATAGTGATGGGTACTCcggctcttttcagtgagccAGCTTGTTCGGCTCAGCTCACCATAATGAGCC
>TU2335718
GGAAACGCAAAAGCCGTCTTTTTGGCAAAAAACTACCGTGTCCTTAGTTGAAATTCGCAATGAAACAGAAGATGTAAAACTTACTTCTTAGCCTTGTAGACGTAAGCACAGCGCTTGCCTAGGTAGAAGTCAACCTCCTCCCGTGTGTACACTCCCTCCACCTTCAGCAGGGCGGTGTGCTCCCGCTGGTTCCTTAGGCCGCGCTTATACCCGGCAAAGATGGCCTTGCTCCACAGTCTTCCTGGCATCTTGAGTCTATTCCCAGGCACGGAAAAACCTGCACTGTAAGAAAAATGGAGGAAAAGGAAGTCGGAACGGAATGCTGGGAAATGTACGTAGTCGGTGACGACAGAGGCGCATGATAGTGATGGGTACTCcggctcttttcagtgagccAGCTTGTTCGGCTCAGCTCACCATAATGAGCC
>TU2335709
TGTCTGCTGGGTCTGGAATTAAACCTTGTGCTAATCATCAGCGAAGAACAGAAGAAGGTACCACTCACCACTCTGACTCTGTGTCCCATGGCTTTTGCTGGGAGGTTACTGCTGAACTTGGCCCGCACCATTCCACTGTTGCCATGAGCACGCATGACTTTGCCCCAGATTACCCGCGTCTTGTTGGGCTTGCCACCAGGAGTCACTGTGTTCTTCTTAGCCTTGTAGACGTAAGCACAGCGCTTGCCTAGGTAGAAGTCAACCTCCTCCCGTGTGTACACTCCCTCCACCTTCAGCAGGGCGGTGTGCTCCCGCTGGTTCCTTAGGCCGCGCTTATACCCGGCAAAGATGGCCTTGCTCCACAGTCTGAAATATTAAAAGAATACATAAACCAGAGCACTCAACCGGTGTATCATCA
>TU2335710
TGTCTGCTGGGTCTGGAATTAAACCTTGTGCTAATCATCAGCGAAGAACAGAAGAAGGTACCACTCACCACTCTGACTCTGTGTCCCATGGCTTTTGCTGGGAGGTTACTGCTGAACTTGGCCCGCACCATTCCACTGTTGCCATGAGCACGCATGACTTTGCCCCAGATTACCCGCGTCTTGTTGGGCTTGCCACCAGGAGTCACTGTGTTCTTAGCCTTGTAGACGTAAGCACAGCGCTTGCCTAGGTAGAAGTCAACCTCCTCCCGTGTGTACACTCCCTCCACCTTCAGCAGGGCGGTGTGCTCCCGCTGGTTCCTTAGGCCGCGCTTATACCCGGCAAAGATGGCCTTGCTCCACAGTCTGAAATATTAAAAGAATACATAAACCAGAGCACTCAACCGGTGTATCATCA
>TU2335714
GATTCCCACCCTCCCAACTGCCAAGAGAACACAGAACACCAATTGTGGACCTGACTTGTTTATTGTATGTACACAAAAACAGCACATTACACACGAGATGGGTACAGCATCACTCTGACTCTGTGTCCCATGGCTTTTGCTGGGAGGTTACTGCTGAACTTGGCCCGCACCATTCCACTGTTGCCATGAGCACGCATGACTTTGCCCCAGATTACCCGCGTCTTGTTGGGCTTGCCACCAGGAGTCACTGTGCTTCTTAGCCTTGTAGACGTAAGCACAGCGCTTGCCTAGGTAGAAGTCAACCTCCTCCCGTGTGTACACTCCCTCCACCTTCAGCAGGGCGGTGTGCTCCCGCTGGTTCCTTAGGCCGCGCTTATACCCGGCAAAGATGGCCTTGCTCCACAGTCTGAAATATTAAAAGAATACATAAACCAGAGCACTCAACCGGTGTATCATCA

Function

NR:

description
PREDICTED: 60S ribosomal protein L35a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335715 False 556 lncRNA 0.53 4 2670303 2682802
TU2335718 False 428 lncRNA 0.51 3 2670303 2681723
TU2335709 False 418 lncRNA 0.52 2 2681435 2682802
TU2335710 False 415 lncRNA 0.52 2 2681435 2682802
TU2335714 True 458 lncRNA 0.52 3 2681435 2685780

Neighbor

gene id symbol gene type direction distance location
LOC110507328 LOC106580643 coding downstream 128019 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 204825 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 264085 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 498516 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 703652 1937827 ~ 1966651 (-)
LOC110507043 LOC106603827 coding upstream 250748 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 260142 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 270860 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 551621 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 562030 3247810 ~ 3255113 (-)
G2041725 LOC106584099 non-coding downstream 14518 2649494 ~ 2655785 (-)
G2041710 NA non-coding downstream 41928 2628047 ~ 2628375 (-)
G2041626 LOC106612439 non-coding downstream 171974 2496500 ~ 2498329 (-)
G2041613 NA non-coding downstream 174603 2480646 ~ 2495700 (-)
G2041498 NA non-coding downstream 372644 2281840 ~ 2297659 (-)
G2041752 LOC106612343 non-coding upstream 18591 2704371 ~ 2709010 (-)
G2041777 LOC107758061 non-coding upstream 58326 2744106 ~ 2783787 (-)
G2041811 NA non-coding upstream 99361 2785141 ~ 2785362 (-)
G2041812 NA non-coding upstream 99982 2785762 ~ 2786347 (-)
G2041813 NA non-coding upstream 101607 2787387 ~ 2787676 (-)
LOC110507298 spcs2 other downstream 1899566 769005 ~ 776178 (-)
G2041883 NA other upstream 209796 2895576 ~ 2896391 (-)
G2041885 NA other upstream 213207 2898987 ~ 2899388 (-)
G2042608 NA other upstream 714799 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 853404 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1657819 4343599 ~ 4348409 (-)

Expression


Co-expression Network