G2041786 (rnpepl1)


Basic Information

Item Value
gene id G2041786
gene name rnpepl1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2798470 ~ 2802100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335802
TCTCAAGGCTTTTTTATTACTTGTAAAACATTGGAGACAAACCTGCTAGTCTATCCCCTCTGTGTTGTACAGTAACAATACTGTACATTAAGTAAGGCATCGGAGGATAGCTGAAGACTGTCACCGTTTAACAATGTAATCTCATGTTATCATCAAAACAAACATTCTGCCCCTCACATTTCTATGCTGAGAGGTACAGCCCGTTCACAATTCATAAATAATAATGTTGGGAGGAAACGTTAAAACAAAACGTGTACAAAATCATGGTTAACATTTCAGCCCAGCTATTCATTAATAACGACACTGAAatacaccccccacccctctctttaGTCAATCACAGAATCAAAATGATCTGTAGCTTTGGAAATGGCAGTCAAGCCTGAACGAGAGAAGTCTAGAAGACAGACACTGTTGACAAGGGTCGCATTCAGGAGGGTGCCACGTTCTATATAGCTGACAACGATTCCCTATTCTTCAGGACAAAGAAACATGTCTGTTCAATAAATTCCCATCTGAAGGTCCTATAAAGTTACACGCCACCTGGGTAGGTGGATGCACGTTACAGGACTGAACGTGACCCAGATGAATAGCAGAGCTCCAGTTTGAAGGCACGTGTGGCCTTACCCTCTCCCTTCTCACGACAGCCCTATGGGAGAGGGTTTTGCACTGTGGGGGCTGCGTCTCAATAGTGTAAAGTAGTAGGCCTACCAACCTTCCCTACTTAAGGGAGTTGATGAGTAAAAGCAAAGTTGTCAAAGAAGCACACTCCATAATTTAGCCGACTGGACTTTCATTTCAGTAAATGTTCAATTCTTTCAGATAAGTGCAGATGAGGGTAAGGAGACGAGGAAGGCTGTTTAGACTACCGAGACACAGCCCAGGTGTAAAGGGAAGAGAGTGAGCAGGGGGAATTCCACATCTATTGCTGGATAAGCCTTCCTGTTGGATATTCCAAATGTGGAAATAATCAATTGTAATTATTAAAGGTAGGGTTAAAGTGTGCAGTGTTGAACGTAGCAAACAGAGGCTTGCGTCCCAAATGCTATGGGCCCTGGGTTcgatagtgtactacttttgaccatagcccCATCTATGGTAgcggttctcaaacctctccgcAGGGACCCCCAGCCATTCTATGCATTTGATCTATTCCACACCTAGCTCACCTGACTCTTAGCTTGTCAACTAaccatcaagcccttgactatgTCAATCAGGTGAGCTAATTCAGGGCCACAACAAATTTGTGAGATGTCTGGGGGTCCCCgaagagGAGtgcaatatgtagggaatagattGCCATTTGGGGACAGCAGGGCTCTCCTCTCTCAGACTACAGACTGGGCAGAGGGACATTTGGTGGCTCACTCTCCCTGTAAATTAGTCTAGGGCACAAGCTGCAGGCTCATGAAGCCATAATCCCAGCGCTAAGCAGGACACACAACATGTGTGTAAACAGTCAATAGATGGTTTCCTCCATTCATGAAGTgcatgcgcacgcacgcacgcgcgcgcacacacacacacacaacattgtcCTTCCCAGAGAGGTTTCAAACGGTTAGCTTACAAAAATCAGACTCAACATATAAATACGCATATACAGTGCaattagaaagcatccagaccccggacttgatcccgatctaacatctctggagagatctgaaaataactgttcagcaacgctccccatccaacatcacagagcttgagaggatctccagagaagaacgggagaaactagACAAATACAGGCAtcaagcttgtagcgccatacccaagaagactcgatgctgtaatcattgccaacggtgcttcaacgaagtactgagtaaaagggtctgaatacttatgtttttgctttgtcattatggggtattgtgtgtagatagatgatagaaaaaaacaattgaattaattttggaataaggctgtaatgtaacaaaaggtggaaaaagtcaaggtgtctgaatactttccgaatgcactgtacatacacagtgTGCATtagtgtgtaactgtgtgtgcatgtgtatgaaCCTGGTGGTCCTTCGTCACTCACTCCTCAGTCTCAGTCAAGCACAGATGATGTCTGGCTGAAACTGCAGTCATTTCAAGACTTACAGTTCTTCACCTTTTTCAACATGCCACCCCCCTTTCTCACAGTGTATGtatgtctctcttctcttctaccGGCCACTCAGGCGGACACGTTGACGTCACGTAGTGCGATAGTACCAGTCGTGGGGGGGTCGGCGGGCCCCAGTTGGTCCCTGGGGGTGGGACTGGGTGACGAAGGGGTGGGGTGTAGTAGGGAGGGGACAGAGCCTGTGGGAGTGGATAAGGCGCTGGTCTGGAACAGGATCTGCTGGAGTGTCCGTCGGAGGTTGGGGTGGAGGCGGGCTTGTGTCTGGTAGAACACCTCAGCTGCAAAGCACTTCATCACCCCGGAACAAAGGTCCTCATACAACGGGACTGTGTACATCCTCG

Function

symbol description
rnpepl1 Predicted to enable metalloaminopeptidase activity and zinc ion binding activity. Predicted to act upstream of or within proteolysis. Orthologous to human RNPEPL1 (arginyl aminopeptidase like 1).

NR:

description
aminopeptidase RNPEPL1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335802 True 2499 lncRNA 0.46 4 2798470 2802100

Neighbor

gene id symbol gene type direction distance location
LOC110507328 LOC106580643 coding downstream 256186 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 332992 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 392252 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 626683 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 831819 1937827 ~ 1966651 (-)
LOC110507043 LOC106603827 coding upstream 134428 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 143822 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 154540 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 435301 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 445710 3247810 ~ 3255113 (-)
G2041819 NA non-coding downstream 3303 2794626 ~ 2795167 (-)
G2041818 NA non-coding downstream 3910 2794359 ~ 2794560 (-)
G2041815 NA non-coding downstream 8777 2788756 ~ 2789693 (-)
G2041814 NA non-coding downstream 10407 2787798 ~ 2788063 (-)
G2041813 NA non-coding downstream 10794 2787387 ~ 2787676 (-)
G2041820 NA non-coding upstream 1287 2803387 ~ 2803624 (-)
G2041821 NA non-coding upstream 1622 2803722 ~ 2803929 (-)
G2041823 NA non-coding upstream 2830 2804930 ~ 2805159 (-)
G2041828 NA non-coding upstream 8887 2810987 ~ 2811289 (-)
G2041847 NA non-coding upstream 88617 2890717 ~ 2891020 (-)
LOC110507298 spcs2 other downstream 2027733 769005 ~ 776178 (-)
G2041883 NA other upstream 93476 2895576 ~ 2896391 (-)
G2041885 NA other upstream 96887 2898987 ~ 2899388 (-)
G2042608 NA other upstream 598479 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 737084 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1541499 4343599 ~ 4348409 (-)

Expression


Co-expression Network