G2041899 (LOC106566134)


Basic Information

Item Value
gene id G2041899
gene name LOC106566134
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 2914527 ~ 2915892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2335920
ggaaccatttccctgtttgacctgtagttgttatggatattatgactctacagagccccacagtggacggGGTCACAATATGTTACATTGATAAAGCACACTTTATTTAACCTCCATGTCATCTTGTTTTTACATGGCATTGTAGATTTTAGCGGTATATAGTATGCATTTTGGATGCTTTCAGTGTATTTTCAACGCTTTCAGACAATGGATGCACTAACATTACAAAGTTATCTCAAGTCTGACAgcccaaacaaaaacacacattctCAGTCAAAAACACAAGTCAGAACACAGCCTCTCGATTCTCTCGTGTGATTTCAGgtcctctgactgggaaaatgtctttccacaatgagagcagtggtatgtcttctcctcctgtgtatttgtatgtattcTTTCATGCTCTTTCAGGTACCTTAACCGGGTAAatctctttccacagtgggagcagtggtacgtcttttttgctgtgtgtgtcctctcatgctgGTTCAGGTTTCCTAACTGGGCAAAATGCTTTCCACAATGGGAACattggtaaggcttttctcctgtgtgtattctctcgtgctcCTTCAGGCTCCCTAACTGGGTACaactctttccacaatgggaacattggaaaggcttttctcctgtgtgtgtcctctcatgccttTCGACGCTCCCTAACCACCTAAAACTCTTTCCGCACaaggagcagtggtaaggcttctcttctgtgtgtattctattatgtgttttcaggctccctaactgagtaaaactctttccacactgggagcagtgatgTCGTCCTGCTGGTTTA
>TU2335921
TACAGAATCATCGGTAACAATTGTGTACAAGCCACCTAGCTAATAAAATACTGGGGCTTGCGGTCATCAGTTACATTTCAACCACAGCGATTCCCCAATTGAGGCGCAACAGAGTTCACCGGCAAATGCAGGAACACCGGAAATAATAACTAAACCAACGAATGAGAAATGGTGGAGGCCACCAGAACGACGATACATTTTTTCAGAATAAACGTGGTGAGTGAAAAAACGTAATTACATAGCTCACTCCCTATTCGGTATCTCATTCTACTGTTATACGACTctgtatgcgttgtttgttggcaaccttgttatTTACTAAGTTTTTGGAAcggattcctgttggaacgttccacaaattatacccaccctggGTCCAGCAAAataaaggcagttatacaatattaaaaacattacaatacattcacaacacacgGTATGCCCTCAGTCACCTTGTcttagagagatttacatggttatcaaaacatcacaccAGGGTGAGCCTAAACAAAACACAGCCCTGTGGGAAAAATTAATGTTGGAAAAaggattggaaccatttccctgtttgacctgtagttgttatggatattatgactctacagagccccacagtggacggGGTCACAATATGTTACATTGATAAAGCACACTTTATTTAACCTCCATGTCATCTTGTTTTTACATGGCATTGTAGATTTTAGCGGTATATAGTATGCATTTTGGATGCTTTCAGTGTATTTTCAACGCTTTCAGACAATGGATGCACTAACATTACAAAGTTATCTCAAGTCTGACAgcccaaacaaaaacacacattctCAGTCAAAAACACAAGTCAGAACACAGCCTCTCGATTCTCTCGTGTGATTTCAGgtcctctgactgggaaaatgtctttccacaatgagagcagtggtatgtct

Function

NR:

description
zinc finger protein 287-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2335920 False 814 lncRNA 0.43 1 2914527 2915340
TU2335921 True 926 lncRNA 0.40 1 2914967 2915892

Neighbor

gene id symbol gene type direction distance location
LOC110507328 LOC106580643 coding downstream 372243 2518713 ~ 2542284 (-)
wdr95 LOC106580697 coding downstream 449049 2432760 ~ 2465478 (-)
LOC110507325 LOC106612440 coding downstream 508309 2225711 ~ 2406218 (-)
LOC110507323 NA coding downstream 742740 1977082 ~ 2171787 (-)
n4bp2l2 LOC106580637 coding downstream 947876 1937827 ~ 1966651 (-)
LOC110507043 LOC106603827 coding upstream 20636 2936528 ~ 2940847 (-)
LOC110507338 LOC106603753 coding upstream 30030 2945922 ~ 2956588 (-)
LOC118944748 NA coding upstream 40748 2956640 ~ 2961498 (-)
tsen34 tsen34 coding upstream 321509 3237401 ~ 3240233 (-)
LOC110507346 eif2a coding upstream 331918 3247810 ~ 3255113 (-)
G2041897 NA non-coding downstream 2466 2910871 ~ 2912061 (-)
G2041894 LOC100136012 non-coding downstream 6115 2908141 ~ 2908412 (-)
G2041893 NA non-coding downstream 6811 2907487 ~ 2907716 (-)
G2041888 NA non-coding downstream 12994 2901277 ~ 2901533 (-)
G2041886 NA non-coding downstream 14542 2899762 ~ 2899985 (-)
G2041900 NA non-coding upstream 1349 2917241 ~ 2917648 (-)
G2041901 NA non-coding upstream 2413 2918305 ~ 2918648 (-)
G2041902 NA non-coding upstream 3055 2918947 ~ 2919152 (-)
G2041907 NA non-coding upstream 10936 2926828 ~ 2927070 (-)
G2041908 NA non-coding upstream 11505 2927397 ~ 2927834 (-)
G2041885 NA other downstream 15139 2898987 ~ 2899388 (-)
G2041883 NA other downstream 18136 2895576 ~ 2896391 (-)
LOC110507298 spcs2 other downstream 2143790 769005 ~ 776178 (-)
G2042608 NA other upstream 484687 3400579 ~ 3402997 (-)
LOC110507356 LOC106580682 other upstream 623292 3539029 ~ 3718487 (-)
G2043460 NA other upstream 1427707 4343599 ~ 4348409 (-)
G2043483 NA other upstream 1463042 4378934 ~ 4379429 (-)
G2043518 NA other upstream 1498173 4414065 ~ 4414423 (-)

Expression


Co-expression Network