G2088254


Basic Information

Item Value
gene id G2088254
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46897874 ~ 46931341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2388552
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctttctctctttctctctttctttctttctttctttctctctctttctttctttctctctttctctttctctctctttctttctttctctctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388553
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388555
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctttctctctttctctctttctttctttctttctttctctctctttctttctttctctctttctctttctctctctttctttctctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388556
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctctctttctctttctctctctttctttctttctctctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388557
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388558
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctctctttctctctttctttctttctctttctctctttctctctttctttctttctttctttctctctctttctttctttctctctttctctttctctctctttctttctttctctctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctttctctctttctttcttacttACTTttcttta
>TU2388559
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctttctctctttctctctttctttctttctttctttctctctctttctttctttctctctttctctttctctctctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388560
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388561
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388562
tattctgtgtcctgtgtgaatttaagtgtgctctctctctctctctctctaattctctctttctttctctctctctctctctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctttctctctttctttcttacttACTTttcttta
>TU2388563
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388564
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctttctctctatctttctttctctttctctctctctttctctttctttctctctttctctctttctttctctctttctctctttctttctctctttctctctttctttctttctctctctctttctttctctctctctttctttctctttctctctctctttctttctttctctcttactttctttctttctttctctctttctttctctctttctttctttctttctctctttctttctctctttctctctttctttctttctctttctctctttctctctttctttctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta
>TU2388565
tctctttcttcctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctctctttctttctttctctctttctttctttctctttctctctttctttctttctctctttctttctctctatctttctttctctttctctctctctttctttctctctttctttctctctttctttctttctttctttctctcttactttctttctttctctctttctttctttctttctctctttctttctctctttctttctttctttctttctctctttctttctctctttctttctctctctctttctttctttctctctctctctttctctctttctctctttctttctttctctctttctctctttctctctctctttctttctctctttctttctttctctttctttctttctttctctctctctttctttctttctctttctctctttctttctctctttctttctttctttctttctctctctctctttctttctttctctctttctctctttctttctttctttctttctctctctttctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctttctttctttctctctctttctttctttctctctttctttctttctctctctttctttctttctctctttctttctctctttctctctttctttctctctttctttctttctttctctctctttctttctctctctctttctttctttctctctttctctctttctttctttctctctctttctttctttctctctttctctctctctttctttctttctctctctctttctttctttctttctctctttctttcttacttACTTttcttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2388552 False 1109 lncRNA 0.33 2 46897874 46899120
TU2388553 False 611 lncRNA 0.33 2 46897874 46899120
TU2388555 False 1085 lncRNA 0.33 2 46897874 46899120
TU2388556 False 1173 lncRNA 0.33 2 46897874 46899120
TU2388557 False 821 lncRNA 0.33 3 46897874 46899120
TU2388558 False 827 lncRNA 0.32 3 46897874 46899120
TU2388559 False 803 lncRNA 0.33 2 46897874 46899120
TU2388560 False 631 lncRNA 0.33 2 46897874 46899120
TU2388561 False 1127 lncRNA 0.33 2 46897874 46899120
TU2388562 False 496 lncRNA 0.33 3 46897874 46931341
TU2388563 False 989 lncRNA 0.33 3 46897874 46899120
TU2388564 False 1057 lncRNA 0.33 2 46897874 46899120
TU2388565 True 899 lncRNA 0.33 2 46897874 46899120

Neighbor

gene id symbol gene type direction distance location
LOC118944689 NA coding downstream 127172 46768648 ~ 46770702 (-)
rcbtb2 rcbtb2 coding downstream 326201 46536201 ~ 46571673 (-)
lpar6a LOC106592078 coding downstream 399988 46409330 ~ 46497886 (-)
LOC110515379 NA coding downstream 532746 46362662 ~ 46365128 (-)
cog6 cog6 coding downstream 700645 46012193 ~ 46197229 (-)
ndufc2 nduc2 coding upstream 41240 46972581 ~ 46975116 (-)
LOC118944730 NA coding upstream 94818 47026159 ~ 47026384 (-)
LOC110515838 NA coding upstream 677217 47608558 ~ 47609889 (-)
LOC118944731 NA coding upstream 1853453 48784794 ~ 48792946 (-)
yap1 yap1 coding upstream 1861816 48793157 ~ 48897016 (-)
G2088281 NA non-coding downstream 19105 46875624 ~ 46878769 (-)
G2088272 NA non-coding downstream 46904 46841285 ~ 46850970 (-)
G2088273 NA non-coding downstream 48981 46844319 ~ 46848893 (-)
G2088269 NA non-coding downstream 60434 46834683 ~ 46837440 (-)
G2088266 NA non-coding downstream 66751 46830555 ~ 46831123 (-)
G2088303 NA non-coding upstream 3635 46934976 ~ 46935242 (-)
G2088305 NA non-coding upstream 7546 46938887 ~ 46939162 (-)
G2088307 NA non-coding upstream 39902 46971243 ~ 47017105 (-)
G2088344 NA non-coding upstream 70361 47001702 ~ 47003692 (-)
G2088356 NA non-coding upstream 87200 47018541 ~ 47018944 (-)
G2087288 NA other downstream 1099544 45797070 ~ 45798330 (-)
G2087090 LOC106593344 other downstream 1367094 45530356 ~ 45530780 (-)
G2086783 NA other downstream 1976562 44920909 ~ 44921312 (-)
G2085726 NA other downstream 2985194 43912160 ~ 43912680 (-)
G2084740 LOC106613316 other downstream 4112839 42784627 ~ 42785035 (-)
G2088345 NA other upstream 72524 47003865 ~ 47004875 (-)
G2088531 NA other upstream 321334 47252675 ~ 47253186 (-)
G2088739 NA other upstream 612962 47544303 ~ 47550500 (-)
G2089393 NA other upstream 862255 47793596 ~ 47794379 (-)

Expression


Co-expression Network