LOC118936616 (LOC106600091)


Basic Information

Item Value
gene id LOC118936616
gene name LOC106600091
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8480324 ~ 8522153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967087.1
TGTTCTGTGAGGTGGAGGTGAAGAAGCTGTGTCTCTCTCAGGCTAATGCTGACCTGGCTGAGGCCGCAGACAAACTAGAAGCCATTAGGAAGAAACTAgctgAGTTGGACTGTAGTCTGGATACCCTGACTGCTGCATTTGAGAAGGCTACCTCTGAGAAGCTTCGCTGTCAGGACGAGGTCAACCACACCAACAAAACCATCGAACTGGCCAATCGCCTCGTCAAAGGACTCGAGtcggAGAATGTGCGTTGGGCCCACTCTGTAGCCGGGTACCATGAGCAGGAGGCGACTCTGTGTGGAGACATTCTGCTGACTGCAGCCTTCATCTCCTACGCCGGATCCTTCTCTAAGAAGTACCGCAGAGAACTACTGGAGAACCTCTGGATGCCCTTCCTACGTGGCCAGAAGatcCCCATCCCCATGACGGAGGGGTTAGATCCAGTGTGTATGCTGACTGATGATGCTACCGTGGCTCAGTGGAACAACGAGGGGTTGCCGGGAGACAAGATGTCCACTCAGAACGCCACCATCCTCACCAACTGTGAACGCTGGCCACTGCTTATTGACCCCCAACTGCAGGGCATCAAGTGGATCAAGATTCGTTATGGCAACAGCCTCAAGGTGGTCAGCCTGGGAGAGAAAGGGTATGTGGATGTGATAGAGCAGGCTGTTGTGACTGGAGACACTGTCCTCATAGAGAATCTGGAGGAGTCCATCGACCCTGTCATAGACCCTCTACTGGGACGACACACGATCAAGAAgggcagttgTATAAAGGTGGGGGATAAAGAGTGTTTCTTCCACCCAGCGTTTAGGCTGATCCTCCACACTAAGCTGGCTAACCCCCACTATAAGCCTGAGATCCAGGCCCAGACCACCCTCATCAACTTCACTGTTACAAGAGACGGCCTGGAGGACCAGCTGCTGGCTCAGGTGGTCAATCTGGAGAGGCCTGACCTCGAGCACCTCAAGAGTGACCTGACCAAGCAGCAGAACCTGTTCAAGATAGAGCTGAAGCTGTTGGAGGACGAGCTGCTGGGCCGTCTCTCTGCTGCTGAGAGCAACTTCCTAGGAGACAACGTCCTGGTGGAGAAACTAGAGACCACCAAACACACGGCCGCGGAGATCGAGATGAAGGTTCTGGAGGCGAAGGTGAACGAGGTGAAGATCAACGAGGCCAGAGAacactaccgccccgtagcagtCAGATCCTCTCTGCTCTACTTCATCATGAACGACCTCAACAAGATCAACCCCATGTATCAGTTCAGCCTCAAGgCGTTTAATGTGGTGTTCCACAAGGCGGTGGAGCAGGCAGAGGTGTGTGAGGACGTGAGGAGCAGAGTCAACACTCTAATAGACGGCATCACCTACTCCACCTTCAACTACATCAGCAGAGGCCTGTTTGAAAGAGACAAACTCACCTTCACCGCTCAACTCGCCTtccagTTGTTACTGATGAGTAAGGAGATAGACGTACGAGAACTAGACTTCCTGCTCCGCTTCAACATCGACCACAGCTACATCTGTCCTGTAGACTTCCTCTCCAACCAGGCCTGGAGCGCcatcaagaCAATGAGTTTCACTGATGAGTTTCGTGGTTTGGACCGGGACATCGAGGGCTCCCCTAAACGCTGGAAAAAGGTGGTAGAGTCCGAGTGTCCGGAGAAAGAGAAGTTTCCTCAGGAGTGGAAAGCAAAAAGTTCCCTGCAGAAACTCATTATGATGAGAGCCCTGAGACCTGATAGGATGACTTACGCTGTCAGGAACTTTGTGGAGGAGAAGTTGGGGGTGAAGTatacagagaggaggaagaccgAGTTTGCTAAGTCCTTCAGAGAGAGTGGACCCGCCTCGCCTGTCTTCTTCATCCTGTCTCCCGGAGTAGACCCTCTCAAAGACGTGGAGTCACTGGGCAGGAAGTTAGGATTCACCATAGACCTGGGGAAGCTCCACAATGTGTCTTTGGGTCAGGGCCAGGAGGCTGTGGCTGAGGTTGCCATGGAGATGGCTGCTAAGGAGGGACACTGGGTCATCCTACAGAATATCCACCTGGTGGCTCGCTGGCTGGGGTCGTTGGAGAAGCTTCTGGAACGCTGCTGTGAGGGCAGTCACCAGGACTACAGAGTGTTTATGAGTGCTGAGCCTGCCCCTACACCACAGGAGCACATCATCcctcagGGCATCCTGGAGAATGCCATCAAGATCACTAACGAGCCTCCCACTGGCATGCATGCCAACCTCCACGCTGCTCTGGACAACTTTGACCAGgatatATTGGATCAGTGCAGTAGAGAGCAGGAGTTTAAGACcatcctgttctctctgtgttattTTCATGCCTGTGTGGCTGAGAGGCGCAAGTTCGGTCCTCAGGGTTGGAACAGGAAATACCCCTTTAACACTGGAGACCTCACCATCTCTGTCAATGTGCTCTACAACTACCTGGAGGCCAACTCACAGgtgccGTGGGAGGACTTGCGCTATCTGTTTGGAGAGATCATGTACGGAGGTCACATCACAGACGACTGGGACAGAAGACTCTGTAGAACCTACCTGGAGGAATACATGCAGCccaaccagTCTGACAGGAAGTTGGCTCTGGCTCCGGGCTTTGTGGTTCCCTCCAACTTGGACTACCAGGGTTACCATGGTTACATAGATGAGATGCTGCCCCATGAGAGCCCGGTGCATTATGGGCTACACCCCAACGCAGAGATAGAGTTTCTGACGGTGACCTCTGATAACCTCTTCCACACACTGCTGGAGCTGCAGTCACCTGACTCTGTGATGGGAGAGGGGGCTTCACAGACCGTAGAGGAGaagGTGAAGACCATCCTAGACGAGGTGTTGGAGAAGCTTCCAGAAGAGTACAACATGTCAGACATCACGTCTAAGACAGCTGAGAGATCACCATACATCCTGGTCTGCTTCCAGGAGTGTGAGCGTATGAACACGCTCATCTACGAGATACGACGCTCACTGAAGGAGCTGGACCTAGGGCTGAAGGGTGAGCTGGCAATCTCCTCAGAGATGGAGCAGATCCAGGCAGCTCTGTTTTTTGATAACGTCCCAGACACCTGGACCAAACTGGCCTACCCCTCCACTTACAGCCTTGCCCAGTGGTATAATGACGTGTTGCTGCGCTGCAGAGAGCTGGACAGCTGGACACAGGACCTGGCTCTTCCCACCGTCATCTGGCTGTCTGGACTCTTTAACCCACAGTCCTTCTTAACagcGGTGATGCAGTCTCTGGCTCGTAAGAATGAGTGGCCGTTAGATAAGATGAACCTGACTGTGGACGTGACTAAGAAATTTAAGGAAGAgttcaaccagccagccagagaggGAGTATACATATACGGACTATACATGGAAGgTGCAAGATGGGACACTCAGGGTGGGGTGATCGCGGAGGCTCGTCTGAAGGAGTTAACCCCCTCCATGCCAGTCATCTCAGTCCGAGCAGTACCGAACGACAGACAGGAGACGCGTAACATCTACGAGTGTCCCCTGTACAAGACCAAGCTGAGAGGAACCACTTATGTCTGGACCTTCAGCCtcaagaccagagagagaccagccaaGTGGGTACTGGCTGGGGTGGCCCTGCTGCTCAGTGTGtagaggtaagggttagggggtgaggagggagacCAGCCAAGTGGGTACTGGCTGGGGTGGCCCTGCTGCTCAGTGTGtagaggtaagggttagggggtgaggagggagacCAGCCAAGTGGTTACTGGCTGGAAAGAAGCAAGGTCGTTTTCCATTAGCTATTTGTAGGGTGTGTATTTTCTGTGAGAGAAGGTATTTTATGTCAAATACATGTATGTGTTACTACATAATCCCTCAAACCAGGTTTGATGTTGCTAttgaaatataaaatacatttgtattgTACTGTTTTAGCACCTGAAAGCTATATGAAAATGTATAAAGCATTTGGACATTTTATTCATATGACTTAAGTAAGAAtagaaataaaaatgaaaatctgTACTTTTTCTGAATTTATTGAAAAACAATACAGTACAAGCTGCAAAATAGTTTCACACATTTGATCACAGTAAGAACCCATTAATTCAAAGCTTAGTATTTTGAACAAATCAACTGTATCGTCTAACAAGTGTACAAGTCGAAAAGCAGAAAACATTGGATGGTACCCTTTACCTAGGCCTAGCCTCAACTAACGAGTGGTGTTCAAGTGCTCTATGGTCTATGTAACACTTGTTAATA
>TU2403860
AGGTGAAGACCATCCTAGACGAGGTGTTGGAGAAGCTTCCAGAAGAGTACAACATGTCAGACATCACGTCTAAGACAGCTGAGAGATCACCATACATCCTGGTCTGCTTCCAGGAGTGTGAGCGTATGAACACGCTCATCTACGAGATACGACGCTCACTGAAGGAGCTGGACCTAGGGCTGAAGGGTGAGCTGGCAATCTCCTCAGAGATGGAGCAGATCCAGGCAGCTCTGTTTTTTGATAACGTCCCAGACACCTGGACCAAACTGGCCTACCCCTCCACTTACAGCCTTGCCCAGTGGTGAGTCATTGGGTGTACTCTCCCACTGCCCCC

Function

NR:

description
dynein beta chain, ciliary-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967087.1 False 4247 mRNA 0.51 24 8480324 8522153
TU2403860 True 334 TUCP 0.53 2 8481732 8482413

Neighbor

gene id symbol gene type direction distance location
LOC110509208 LOC106600076 coding downstream 57338 8408883 ~ 8422986 (-)
LOC110508449 NA coding downstream 96734 8357821 ~ 8383590 (-)
LOC110509207 LOC106600069 coding downstream 144980 8324762 ~ 8335344 (-)
LOC110508446 LOC106600062 coding downstream 175333 8261156 ~ 8304991 (-)
LOC110508444 LOC106600443 coding downstream 413623 8062040 ~ 8066701 (-)
dnah9l LOC102781332 coding upstream 10 8522163 ~ 8598267 (-)
epha4b LOC106600124 coding upstream 259665 8781818 ~ 8910501 (-)
LOC110508274 LOC106600446 coding upstream 454546 8976699 ~ 8978156 (-)
LOC110508456 LOC106600142 coding upstream 471769 8993922 ~ 8995746 (-)
LOC110508458 LOC105022262 coding upstream 585021 9107174 ~ 9123547 (-)
G2101599 NA non-coding downstream 51015 8429053 ~ 8429309 (-)
G2101597 NA non-coding downstream 52692 8427405 ~ 8427632 (-)
G2101518 NA non-coding downstream 98967 8277417 ~ 8381357 (-)
G2101657 NA non-coding upstream 92172 8614325 ~ 8614783 (-)
G2101658 NA non-coding upstream 94677 8616830 ~ 8617038 (-)
G2101663 NA non-coding upstream 103141 8625294 ~ 8625505 (-)
G2101668 NA non-coding upstream 105552 8627705 ~ 8632361 (-)
G2101674 NA non-coding upstream 110679 8632832 ~ 8633220 (-)
G2101464 NA other downstream 240471 8238144 ~ 8239853 (-)
G2101243 NA other downstream 321806 8158219 ~ 8158518 (-)
LOC110508443 LOC106600051 other downstream 481459 7993411 ~ 8044009 (-)
LOC110508434 LOC106600027 other downstream 709141 7767544 ~ 7837267 (-)
G2100707 NA other downstream 886509 7593294 ~ 7593815 (-)
LOC110508459 LOC106599937 other upstream 656181 9154717 ~ 9180242 (-)
G2102731 sugt1 other upstream 709541 9231694 ~ 9255166 (-)
G2102910 nop9 other upstream 1045813 9567966 ~ 9569051 (-)
G2103015 NA other upstream 1254466 9776619 ~ 9776908 (-)

Expression


Co-expression Network