LOC110508274 (LOC106600446)


Basic Information

Item Value
gene id LOC110508274
gene name LOC106600446
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 8976699 ~ 8978156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588700.2
ATGAGGTTGGTGGGCTTAAAAAGAGCTACAGTTCTGGTGAGCGTGACACATCTGACTGCAGACTCAGAGTCAGTGATACAGGCAGAATGAAGGCCCTCCTCGCTCTCCCGCTTCTCTTCACCACCGCTCTACTGATGTCCACCACTTCggctcaagCCGGTGGATCAGTAATCTCCTGCTGTTTGGAGATTAAAGGCACTATAGTGCGCCGCAACCTGATCGATTCCTACTACCTACAGGACACAGCCATGTGTAACATAAAGGCAGTGACGTTTGTCACAGTGAAAGGCCTACGAATCTGCTCTGACACTTCCAACCCCTGGGCACAGAAAACCATGCAGTACCTGAACGAGAAGAACAAGTCTCACACACTGCAAAAACATCACATCACCtcaactactacttctactacaacCACCACTATCGCACAACCAGCCAACAACAACCCTCACAAAACAACATTTTCAGCTCGCCACCCCAAAATTGCTTCTCAATGGTCAACAACTCACCACAAgacgtagagggagagagaattttCCAGTTCCTAGTACAGCCGACTATTGACTTTGAATGTTTGAATATTTTCAATATGCAGCTATTATAACGTTTGTCACTTTAATGAATATCTTTATATATTTATGAATGATTCAATCGAATTTACTTCCACAGTGAATTTGATGATTGTGATTGTGTGTTAACTTTCTGGCTATTTGCCAGTATGCCTAAACAATGTATAATGTTTCTTAATAAAATAATAGTTTTAA
>TU2404356
GCAGACTCAGAGTCAGTGATACAGGCAGAATGAAGGCCCTCCTCGCTCTCCCGCTTCTCTTCACCACCGCTCTACTGATGTCCACCACTTCggctcaagCCGGTGGATCAGTAATCTCCTGCTGTTTGGAGATTAAAGGCACTATAGTGCGCCGCAACCTGATCGATTCCTACTACCTACAGGACACAGCCATGTGTAACATAAAGGCAGTGACGTTTGTCACAGTGAAAGGCCTACGAATCTGCTCTGACACTTCCAACCCCTGGGCACAGAAAACCATGCAGTACCTGAACGAGAAGAACAAGTCTCACACACTGCAAAAACATCACATCACCtcaactactacttctactacaacCACCACTATCGCACAACCAGCCAACAACAACCCTCACAAAACAACATTTTCAGCTCGCCACCCCAAAATTGCTTCTCAATGGTCAACAACTCACCACAAgacgtagagggagagagaattttCCAGTTCCTAGTACAGCCGACTATTGACTTTGAATGTTTGAATATTTTCAATATGCAGCTATTATAACGTTTGT

Function

NR:

description
eotaxin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588700.2 False 764 mRNA 0.43 3 8976699 8978156
TU2404356 True 554 TUCP 0.47 3 8976852 8978099

Neighbor

gene id symbol gene type direction distance location
epha4b LOC106600124 coding downstream 66198 8781818 ~ 8910501 (-)
dnah9l LOC102781332 coding downstream 378432 8522163 ~ 8598267 (-)
LOC118936616 LOC106600091 coding downstream 454546 8480324 ~ 8522153 (-)
LOC110509208 LOC106600076 coding downstream 553713 8408883 ~ 8422986 (-)
LOC110508449 NA coding downstream 593109 8357821 ~ 8383590 (-)
LOC110508456 LOC106600142 coding upstream 15766 8993922 ~ 8995746 (-)
LOC110508458 LOC105022262 coding upstream 129018 9107174 ~ 9123547 (-)
LOC110508459 LOC106599937 coding upstream 176561 9154717 ~ 9180242 (-)
LOC110508462 lect1 coding upstream 277790 9255946 ~ 9263669 (-)
LOC110508463 LOC106600184 coding upstream 287148 9265304 ~ 9269449 (-)
G2102043 NA non-coding downstream 6289 8965210 ~ 8970410 (-)
G2102047 NA non-coding downstream 40172 8936294 ~ 8936527 (-)
G2102045 NA non-coding downstream 40877 8935323 ~ 8935822 (-)
G2102039 NA non-coding downstream 53465 8923003 ~ 8923234 (-)
G2101973 NA non-coding downstream 195410 8781024 ~ 8781289 (-)
G2102077 NA non-coding upstream 2836 8980992 ~ 8981222 (-)
G2102083 LOC106600129 non-coding upstream 14773 8992929 ~ 8993845 (-)
G2102087 NA non-coding upstream 23087 9001243 ~ 9001520 (-)
G2102088 NA non-coding upstream 23421 9001577 ~ 9001847 (-)
G2102112 NA non-coding upstream 76863 9055019 ~ 9056366 (-)
G2101464 NA other downstream 736846 8238144 ~ 8239853 (-)
G2101243 NA other downstream 818181 8158219 ~ 8158518 (-)
LOC110508443 LOC106600051 other downstream 977834 7993411 ~ 8044009 (-)
LOC110508434 LOC106600027 other downstream 1205516 7767544 ~ 7837267 (-)
G2102731 sugt1 other upstream 253538 9231694 ~ 9255166 (-)
G2102910 nop9 other upstream 589810 9567966 ~ 9569051 (-)
G2103015 NA other upstream 798463 9776619 ~ 9776908 (-)
LOC110508473 LOC106600236 other upstream 818338 9739138 ~ 9883971 (-)

Expression


Co-expression Network