LOC110508468 (LOC106600218)


Basic Information

Item Value
gene id LOC110508468
gene name LOC106600218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 9500029 ~ 9540206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966590.1
ATGCCAGGAGAACGATTGATGGAGAGCGGTTCTGATGTGGGCCGTTTCCATGGCAATGCCCTGACCATAGTGGAGGCAACCAACCAGGAGGAGGCGGAGTCTAAGGAGCAGGGGGGCTTTCTCCAGGGTGTTCAGAAGATATGCTGCTGCTGGCCACGCCAGAGCAGCTTGTACGATACAGTTGTCACGGACGAAGTGGAGAAACAGGCCCCGCTTCCTGAGCCCCCTCAGCCCCACACTGGAGACAATCAGCTGGAAGagttGATGTTGTCAGTGCACTCGGTGGATCTACTGAGCTCTAAAACGGGTCAGAACCGCATGGAGCATCACACCGACTGTTACCATGGCAACGCACTCATCATCCGACGTGGCCAGACCTTCCAGATAGAACTGGACCTGTCGCGACCTTTTAACTCCAACACAGACAAACTCCACCTGGACCTCAGGACAGGACCCCTCCCCATGGTGTCAAAGAACACGCACGTCATCATTCAATTGGTGGAAGAGCTGGAGGACGACCGCTGGGAGGCCAAGATAGTGGAGCGGAACGGCAACAGGATCAAGCTGTCCGTCAACTCGCACGCCAAAGCTGTGATTGGCAAGTACAAGCTCACCGTGACGGTGGAGTCTCCGAAGGGCGGGTCTGCAACCACACGCGACCCCAGGAAAGACATCGTCATGCTGTTCAACCCCTGGTGTGAAGATGACACAGTGTACatggatgatgaggaggagaagaaggagtaTGTGCTGAATGACACAGGAAGACTCTACTACGGCACAGAGAAACAGATTGGAGATCGCACATGGAACTACGGAcaaTTCCTTGAGGGGATGCTGGAGGCCTGTCTCTATGTGCTGGAGAAGAGTGAGATCCCTCCGCCTGGTAGAGGGGACCCTGTCAACGTGGTCAGAGTCATATCTGCCATGATCAACTCCCAAGATGACAATGGGGTCCTGGCTGGGAATTGGTCAGGGAACTATGTAGGAGGAGTTTCCCCTACAGCCTGGAATGGCAGTGTGGAGATCCTGAGGAAATACCACAAGGAGGGAGGCCTGCCTGTCAAATATGGACAGTGCTGGGTCTTCTCTGGGGTCACCACCACagtgcTCAGGTGCTTGGGTATACCGTGCCGTAGTGTAACAAACTTCCAGTCGGCCCACGACACAGACGTCTCACTCACCACAGACATGTATTTTGACGAGAAAATGGAGCCGTTCGACGAACTCAACACTGACTCTGTTTGgaATTTCCATGTATGGAACGACTGTTGGATGGCCAGGCCAGACCTTCCTCCTGGTAACGGCGGCTGGCAGGCATTAGACGCCACCCCGCAGGAGACCAGCCAGGGGACCTTCCGCTGTGGCCCTGCTTCTGTCACCGCCATCCGCACCGGCCAGGTCTACCTCAAATACGACACACCTTTCATCTTTGCTGAGGTGAACAGTGATAAGATCTACTGGCAGAGGAACCTGGATGGTATCTTCACTCAGATCCAATGTGAAAAGAAGGCCGTGGGCCACTGCATCAGCACCAAGGCTGTGGGCTCTGACAAACGCGATGACATCACACACCTGTACAAACACACCGAAGGATCAGAGGAGGAACGTATCGCCGTGGAGACAGCCAGTCGTTATGGCACCAAGCCTGACGTGTACTCTACATCCATGGCGGAGGACGTGAGCTTGGAGGTGAAGTTGGAGGGAGAGGGGCCTCGTATGGGGGCTGACGCCCAGCTGACCATCGTGATAACCAATTTCAGCTCCCAGACCCGCAAGACAACGCTACACATCCAGGTGGCAGTCATGTACTACACCGGGGTGCTGAAGGGCACCGTCAAGAAGGACAAGATGCCTGTGGCGCTCAAGCCCAATGAAGTGAAGGCCATGCAGTGGGTCCTGCCCTACCACAGCTACcaggaccagctggtggaccagGCTGCTCTAATGCTGACTCTGTCTGGACGGGTCAGCGAGACCCAACAGGTCCTGGCCACTCAGACCAGCTTCAGGCTACGCACACCTGACCTCAGCATCGAGGCTGTAGGGGAGGCGGTGGTAGGCAAGAAGATGACAGCCAAGATCACGTTCACCAACCCTCTGCCACGTACACTGAGGGGCGTGGTGCTCAGGGTGGAGGGACTGGGCCTGCAGGAGGTCAAAGAGGTGGTTGTGGGTGATGTTGGGAGCCACTCTACGGTGACTCGGACAGAACACTTCATACCCACCCAGGCTGGACACAGGAAGCTGGTAGCAGCTCTGGACTGTAAACAGCTGACACAGGTGCACGGGGTTGCTGACATCATTGTCCAGGACCAATGAGAGGGAGCCTTCAACTGCTCTCTCCTGTCCACTTATCTGGTGTTTCATTCAAGTCTCCAAAAAGAGAATGGGAAGCTTTTTATTCAGTTTTCCCATGATTTGagtgtaatatatatttttttcatgctGACATGTAATTATGGAAATACCCTGATCGTTGGATGAAGTTGTACACTAAATTGTTTTTACCCGTGTTAATGTTTTTAATACTCACGTCATATTTTTCCAAATCaatcaagtttatttgtcacatgcttcgtaaacaacaggtgtagactagcagtgaaatgctttctgacgggcccttcccaacaatgcagagagagaagaaggatcaatagaagaagaagaattcgaggaataaatacacaaggaGTAACGATAACCTGGCTATGTACACGAGGTGccaagtcaatgtgctggggtaggaggtaattgaggtagatacaataggtagggataaagtgactaggcaacaggatagataataaacagcagtaGCCTAAGTGATGAttaaaagagttagtgcaaaaagggtcaatgcacatagttaaatagttaaccaatagctactcGGACAAACTATTTtgcggtcttatggcttgggggtagaagttgttcagaGTCctgttggtcccagacttggtgcttcggtaccacttgccgtgtggtatcAGAACAAACGTTCTATTATTTGGGAGGCTGgctggcctttctctgacaccgcctggtaagctcggccccagtgatgtactgggccatacgcactaccctctgtagggccttgcGGTCAAATTCCAAGCAGTTGACaaaccaagtggtgatgcagccagtcaagatgctctcaatggcgcAGCTATatacctttttgaggatctgaaggccCATGCATAATCTTTTTAGCAatagagggggaagaggcattgtcgtgccttcttcaggactgtgttggtgtgtgtggaccatgataatgcCTTATTGATGTGGACACAGATTCTTGAAGCTCTAGGCTCCGTCCACTGCAGCCATGTGGatggggggcgtgctcggccctccttttcctgaagtccgcgatcagcttctttgtcttgctgatATTGACAtcgaggttgttgtcctggcaccacactgccaggtcactgacttccagataggctgtc
>XM_021589002.2
TCACTTCCTATTTGCGTTCCTCCAGAGGAGCATATCCAAGAAGCGTCTGTTAGAGACAGAAGAACTGGCACGAGCTGAAACTTTTAAAGCTGATAATACACGAACAAGGATATATATATTAGAAGCTTTAAGTCACTCAAACTTTTTCGGTGTATAAAGAAGCCATCACTCAACACAACCACCCCTTTCAGAATGCCAGGAGAACGATTGATGGAGAGCGGTTCTGATGTGGGCCGTTTCCATGGCAATGCCCTGACCATAGTGGAGGCAACCAACCAGGAGGAGGCGGAGTCTAAGGAGCAGGGGGGCTTTCTCCAGGGTGTTCAGAAGATATGCTGCTGCTGGCCACGCCAGAGCAGCTTGTACGATACAGTTGTCACGGACGAAGTGGAGAAACAGGCCCCGCTTCCTGAGCCCCCTCAGCCCCACACTGGAGACAATCAGCTGGAAGagttGATGTTGTCAGTGCACTCGGTGGATCTACTGAGCTCTAAAACGGGTCAGAACCGCATGGAGCATCACACCGACTGTTACCATGGCAACGCACTCATCATCCGACGTGGCCAGACCTTCCAGATAGAACTGGACCTGTCGCGACCTTTTAACTCCAACACAGACAAACTCCACCTGGACCTCAGGACAGGACCCCTCCCCATGGTGTCAAAGAACACGCACGTCATCATTCAATTGGTGGAAGAGCTGGAGGACGACCGCTGGGAGGCCAAGATAGTGGAGCGGAACGGCAACAGGATCAAGCTGTCCGTCAACTCGCACGCCAAAGCTGTGATTGGCAAGTACAAGCTCACCGTGACGGTGGAGTCTCCGAAGGGCGGGTCTGCAACCACACGCGACCCCAGGAAAGACATCGTCATGCTGTTCAACCCCTGGTGTGAAGATGACACAGTGTACatggatgatgaggaggagaagaaggagtaTGTGCTGAATGACACAGGAAGACTCTACTACGGCACAGAGAAACAGATTGGAGATCGCACATGGAACTACGGAcaaTTCCTTGAGGGGATGCTGGAGGCCTGTCTCTATGTGCTGGAGAAGAGTGAGATCCCTCCGCCTGGTAGAGGGGACCCTGTCAACGTGGTCAGAGTCATATCTGCCATGATCAACTCCCAAGATGACAATGGGGTCCTGGCTGGGAATTGGTCAGGGAACTATGTAGGAGGAGTTTCCCCTACAGCCTGGAATGGCAGTGTGGAGATCCTGAGGAAATACCACAAGGAGGGAGGCCTGCCTGTCAAATATGGACAGTGCTGGGTCTTCTCTGGGGTCACCACCACagtgcTCAGGTGCTTGGGTATACCGTGCCGTAGTGTAACAAACTTCCAGTCGGCCCACGACACAGACGTCTCACTCACCACAGACATGTATTTTGACGAGAAAATGGAGCCGTTCGACGAACTCAACACTGACTCTGTTTGgaATTTCCATGTATGGAACGACTGTTGGATGGCCAGGCCAGACCTTCCTCCTGGTAACGGCGGCTGGCAGGCATTAGACGCCACCCCGCAGGAGACCAGCCAGGGGACCTTCCGCTGTGGCCCTGCTTCTGTCACCGCCATCCGCACCGGCCAGGTCTACCTCAAATACGACACACCTTTCATCTTTGCTGAGGTGAACAGTGATAAGATCTACTGGCAGAGGAACCTGGATGGTATCTTCACTCAGATCCAATGTGAAAAGAAGGCCGTGGGCCACTGCATCAGCACCAAGGCTGTGGGCTCTGACAAACGCGATGACATCACACACCTGTACAAACACACCGAAGGATCAGAGGAGGAACGTATCGCCGTGGAGACAGCCAGTCGTTATGGCACCAAGCCTGACGTGTACTCTACATCCATGGCGGAGGACGTGAGCTTGGAGGTGAAGTTGGAGGGAGAGGGGCCTCGTATGGGGGCTGACGCCCAGCTGACCATCGTGATAACCAATTTCAGCTCCCAGACCCGCAAGACAACGCTACACATCCAGGTGGCAGTCATGTACTACACCGGGGTGCTGAAGGGCACCGTCAAGAAGGACAAGATGCCTGTGGCGCTCAAGCCCAATGAAGTGAAGGCCATGCAGTGGGTCCTGCCCTACCACAGCTACcaggaccagctggtggaccagGCTGCTCTAATGCTGACTCTGTCTGGACGGGTCAGCGAGACCCAACAGGTCCTGGCCACTCAGACCAGCTTCAGGCTACGCACACCTGACCTCAGCATCGAGGCTGTAGGGGAGGCGGTGGTAGGCAAGAAGATGACAGCCAAGATCACGTTCACCAACCCTCTGCCACGTACACTGAGGGGCGTGGTGCTCAGGGTGGAGGGACTGGGCCTGCAGGAGGTCAAAGAGGTGGTTGTGGGTGATGTTGGGAGCCACTCTACGGTGACTCGGACAGAACACTTCATACCCACCCAGGCTGGACACAGGAAGCTGGTAGCAGCTCTGGACTGTAAACAGCTGACACAGGTGCACGGGGTTGCTGACATCATTGTCCAGGACCAATGA

Function

NR:

description
protein-glutamine gamma-glutamyltransferase K-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05619 TGM1; transglutaminase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966590.1 False 3482 mRNA 0.52 13 9500029 9525989
XM_021589002.2 True 2514 mRNA 0.55 14 9501189 9540206

Neighbor

gene id symbol gene type direction distance location
LOC110508155 mc6zb coding downstream 34941 9454427 ~ 9465088 (-)
si:ch73-71c20.5 LOC103478929 coding downstream 46230 9447716 ~ 9453799 (-)
casp8 casp8 coding downstream 58995 9423413 ~ 9441034 (-)
trnae-cuc-378 NA coding downstream 105395 9394563 ~ 9394634 (-)
trnae-cuc-377 NA coding downstream 106036 9393922 ~ 9393993 (-)
LOC110508470 LOC106600228 coding upstream 39044 9579184 ~ 9599623 (-)
LOC110508471 LOC106600234 coding upstream 88938 9629144 ~ 9675219 (-)
LOC110508473 LOC106600236 coding upstream 198932 9739138 ~ 9883971 (-)
LOC110508157 LOC106569426 coding upstream 357567 9897773 ~ 9937313 (-)
LOC110508158 LOC106598039 coding upstream 398767 9938973 ~ 9940505 (-)
G2102863 LOC106600212 non-coding downstream 26022 9472629 ~ 9474007 (-)
G2102731 sugt1 non-coding downstream 244863 9231694 ~ 9255166 (-)
G2102736 NA non-coding downstream 347629 9150479 ~ 9152400 (-)
G2102729 NA non-coding downstream 356297 9129789 ~ 9143732 (-)
G2102903 NA non-coding upstream 1918 9542124 ~ 9547321 (-)
G2102992 NA non-coding upstream 182365 9722571 ~ 9727884 (-)
G2103001 NA non-coding upstream 213731 9753937 ~ 9754330 (-)
G2103003 NA non-coding upstream 216809 9757015 ~ 9757233 (-)
LOC110508459 LOC106599937 other downstream 319879 9154717 ~ 9180242 (-)
LOC110508274 LOC106600446 other downstream 521930 8976699 ~ 8978156 (-)
LOC118936616 LOC106600091 other downstream 1017616 8480324 ~ 8522153 (-)
G2101464 NA other downstream 1260176 8238144 ~ 8239853 (-)
G2102910 nop9 other upstream 27760 9567966 ~ 9569051 (-)
G2103015 NA other upstream 236413 9776619 ~ 9776908 (-)
LOC110508476 LOC106600265 other upstream 464020 10004226 ~ 10007929 (-)
G2103203 LOC106600278 other upstream 573222 10113428 ~ 10115397 (-)

Expression


Co-expression Network