LOC110508476 (LOC106600265)


Basic Information

Item Value
gene id LOC110508476
gene name LOC106600265
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10004226 ~ 10007929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589014.2
AATACGGTAGATGGACAACGGACAAAACAGTGACTTACACAGGAAGTAAAGTTTAATCAGAAGGTTTGCTCAGTTTGACAACAATACCACAACACTATACTTGTGGATTAGATATTTAATCTTAAATTGATTGAAAACGTATTTAAAGTAAAAATGCTGATCAAGGTTAAGACTCTCACTGGCAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGAGAATTAAAGAAagggtggaggagaaagaggggattcCACCTCAACAACAAAGACTAATCTACAGTGGAAAACAGATGAACGATGAGAAGACAGCTGCAGACTACAAGATCCAGGGAGGCTCAGTGCTGCATCTGGTCCTGGCGCTAAGAGGGGGGCTAGTCTGCCACTGTTCCAGCATACACCTCATCTCCTAGTGGGCAGTGGGCAGAGTTTGTCATCGTCACACCATGTTGCAACACAGAGCAGCAATGTGGACTGCTGTAATTCCTCTGTTTTTGTAACCACTGTTGGAATTTAAGCAAGTGGGACACTGAGTTTTTTTTGGCTTGTGAATAAAAGGTGAAATGTA
>TU2405551
ACAGTGACTTACACAGGAAGTAAAGTTTAATCAGAAGGTTTGCTCAGTTTGACAACAATACCACAACACTATACTTGTGGATTAGATATTTAATCTTAAATTGATTGAAAACGTATTTAAAGTAAAAATGCTGATCAAGGTTAAGACTCTCACTGGCAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGAGAATTAAAGAAagggtggaggagaaagaggggattcCACCTCAACAACAAAGACTAATCTACAGTGGAAAACAGATGAACGATGAGAAGACAGCTGCAGACTACAAGATCCAGGGAGGCTCAGTGCTGCATCTGGTCCTGGCGCTAAGAGGGGGGCTAGTCTGCCACTGTTCCAGCATACACCTCATCTCCTAGTGGGCAGTGGGCAGAGTTTGTCATCGTCACACCATGTTGCAACACAGAGCAGCAATGTGGACTGCTGTAATTCCTCTGTTTTTGTAACCACTGTTGGAATTTAAGCAAGTGGGACACTGAGTTTTTTTTGGCTTGTGAATAAAAGGTGAAATGTA

Function

NR:

description
NEDD8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589014.2 False 575 mRNA 0.42 4 10004226 10007929
TU2405551 True 549 TUCP 0.42 4 10004226 10007903

Neighbor

gene id symbol gene type direction distance location
LOC110508158 LOC106598039 coding downstream 63721 9938973 ~ 9940505 (-)
LOC110508157 LOC106569426 coding downstream 66913 9897773 ~ 9937313 (-)
LOC110508473 LOC106600236 coding downstream 120255 9739138 ~ 9883971 (-)
LOC110508471 LOC106600234 coding downstream 329007 9629144 ~ 9675219 (-)
LOC110508470 LOC106600228 coding downstream 404603 9579184 ~ 9599623 (-)
LOC110508478 LOC106600269 coding upstream 22864 10030793 ~ 10041031 (-)
LOC118944863 NA coding upstream 50427 10058349 ~ 10060043 (-)
dhrs1 dhrs1 coding upstream 60937 10068866 ~ 10076428 (-)
mmp14b LOC106600280 coding upstream 145047 10152976 ~ 10174843 (-)
LOC110508484 LOC106600289 coding upstream 170467 10178396 ~ 10195465 (-)
G2103127 NA non-coding downstream 30111 9968699 ~ 9974115 (-)
G2103115 NA non-coding downstream 56923 9947067 ~ 9947303 (-)
G2103111 NA non-coding downstream 58934 9944948 ~ 9945292 (-)
G2103098 NA non-coding downstream 75761 9928153 ~ 9928465 (-)
G2103095 NA non-coding downstream 77542 9926467 ~ 9926684 (-)
G2103148 NA non-coding upstream 9798 10017727 ~ 10017943 (-)
G2103153 NA non-coding upstream 14369 10022298 ~ 10022640 (-)
G2103229 NA non-coding upstream 168000 10175929 ~ 10176164 (-)
G2103231 NA non-coding upstream 175979 10183908 ~ 10184116 (-)
G2103015 NA other downstream 227318 9776619 ~ 9776908 (-)
G2102910 nop9 other downstream 435175 9567966 ~ 9569051 (-)
G2102731 sugt1 other downstream 749060 9231694 ~ 9255166 (-)
LOC110508459 LOC106599937 other downstream 824076 9154717 ~ 9180242 (-)
G2103203 LOC106600278 other upstream 105499 10113428 ~ 10115397 (-)
G2103257 NA other upstream 198134 10206063 ~ 10206676 (-)
G2103920 NA other upstream 700083 10708012 ~ 10708499 (-)
LOC110508522 NA other upstream 878269 10886198 ~ 10894141 (-)
G2105419 LOC104953893 other upstream 1491197 11499126 ~ 11500072 (-)

Expression


Co-expression Network