LOC110508508 (LOC106600390)


Basic Information

Item Value
gene id LOC110508508
gene name LOC106600390
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10689183 ~ 10692245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589069.2
TTGTAATCAATTAACGGCAGCGCGGGGCATTCTGGGTGATTCTGGGACAACACGAGCTCTCCTACAAGGAGTGAATGGGAGTCAATTGGGCGCTAGCTCAAAAACCCAACATTAGCATGAATTTTGTAAACAAGAACTACGATATCAATAACAAATCGGAGACGTGAGATAATTTACTTATTATCTGTAATATCGTATAGCTTTGGAATCGGGACACTGTGTACTTTCAAGGAAAATAGGCAAGTTTCTCGACTCATACCCTGACTTTGAGAATGGAACGTGACGATGAGTTTAGCAACCACATGACGCAGAATGACAACTTAAACTCGATTGGGCGACTGTCTGCCTCCATTCATTTTCAAATGAGATTCCCATCTCCTCCTTTCTCTATTATCGCTGGTATTATTACGATTCCTTAAAAGTATATCCGCTCCTCCCCTCAGTTTGTTTTCGCGGAAGTAAAATCCATCAGCGATAGCTATCCGACCATTGTCTTTTCCTACTGAACATTATCTTTAGAAACATAACACTGGTCCGATAAAATGTTGTTCCAGGAGAATATGACCAACTGTGTTACTTTTCAGACCAAATTATCATCCGTTATGGATGTGTTGGCCAAAGCTGCAGTGACCGAAATAAGTAAATTGTTCGATGATGGGTTTGCTGTGTTACGCTTGGAAATGTGCCACAGAGAAAATGAAATTGAAGCCTTGAAAAGAAAATTATTCATGGAGAACGAACGGCAAGCGACGAGTTCAAAACAGCGAGAAGCAGGCAATTCTTTCACATGCTCTTCGTCTTCCAGAAGGACAGAACAGGGGTCCAAGGGGTCTGATGAGGATGCTGGTGAAAGGACTTCATTTGAGCAGACCGCCAGGGACAAAGCGATCACACCTAAAGACAAACAACTGGATCAAAATAGACCACAGCCACCTGCAGAATCAGTAGAGGGGCTCAATGAACAGTACAGGTCTAGCCAGCgagagaagggtagtgcactagaGTTTGTGAAGACAGAGCACGAGGAGGAGTATGACGTTATTTCACTACATACATCAGGAAGTGAACATGGCACAGAGCTATCAAATCATCAGGAAACTGAGTTTGCCATGGATCGCAGAGAGAGTCATCTGTGGGCGTCTGTATCAGAGATTAACTGTGACTCTGAGGGTCCTGATTGCTCATATGGTACAGAACAATATAGACAGGATCTCAATACAGACATACAGCTTATTCAAAGTGCTGTGGAGGGTCTGGATAGCGATCCATCATCAGAGATGGGGTACATAAACAGACTAATGAAAGAAGAGATGCGAGCACAGTCTGGTTGGAATGACCAAAGAAGGACCCCTATAGATTTGGTTCAGGCACAACCAGGTCAGCACAGAGAGCAAACTATGCAcccagagagaagggaggatgggaCAACTACCAGAGTGCCGTCAGACAAACAAACACGAACCAATGAGGGTACAGCATATTCCAACGTTTGGCTAAACAATGTATTCTCGCTTACCCCAAATGGTTTCAACTCAGCAAAGGTAGCCTCAAGGAGTACCCCAGCAAGAGAGAAGTGGTTTGTTTGCAACTTTTGCGGAAAGAGCTTTGACAGGGTCAGTCACTTGGAGATGCATCAACGGATtcatacaggagagaaaccgtacAACTGTGTGACATGTGGGAGGTGTTTTGCTCAGCAGAGTAATCTCCGCACACATCAGCGAGTACACCGGGGCCTCAGAACAAAGCAAACGAAAAGTAATCACAATGACGAGACGACTAAGAACATTCTAGAGAAACCAGCTGGGGCCCGTCCCACACATTATGAAACACAACCTCATTAATATAAACTTTTTCTAATGACTGAGAACAGAGAGTTCCTGAGAAGACAGTCAAGACACTCGGGCAAAAAGCCACAGGATGCTACTTTTGTCTTCCTATTCTGTAAAGTTAGAGCAGTGTGACCCTACCACAACTGTTACACTAGTGgtgctaatatactgtagggagtTAAAGTTACAGGTTTACATCCTCCTGCTTGTATATTTTGAAAGGAACAGTTATCAAGAGGTGGATCTCCGTCATCTTTTAAGTTTTTGTAGGACTATGCCAGAGACAACACATCTGGAGAGAAAATACAATGCACGTGCTTTTATCAATGCATACATTTTTATGAATAAACATGAACATTCTCTGAA

Function

NR:

description
zinc finger protein 473 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589069.2 True 2198 mRNA 0.43 2 10689183 10692245

Neighbor

gene id symbol gene type direction distance location
LOC110508509 LOC106600390 coding downstream 7436 10677802 ~ 10681747 (-)
LOC110508501 LOC106600384 coding downstream 148838 10535026 ~ 10540345 (-)
LOC110508159 LOC106600382 coding downstream 180834 10504714 ~ 10508349 (-)
LOC110508497 LOC106600370 coding downstream 225353 10418527 ~ 10463830 (-)
LOC110508496 LOC106600349 coding downstream 274543 10387353 ~ 10414640 (-)
LOC110508519 LOC106600402 coding upstream 152970 10845215 ~ 10852874 (-)
LOC110508520 LOC106600403 coding upstream 176871 10869116 ~ 10884590 (-)
LOC110508522 NA coding upstream 194382 10886198 ~ 10894141 (-)
LOC110508523 LOC106600405 coding upstream 213282 10905527 ~ 10911512 (-)
LOC110508524 NA coding upstream 280525 10972770 ~ 10985411 (-)
G2103876 NA non-coding downstream 39180 10649682 ~ 10650003 (-)
G2103872 NA non-coding downstream 43068 10645683 ~ 10646115 (-)
G2103871 NA non-coding downstream 43962 10644942 ~ 10645221 (-)
G2103870 NA non-coding downstream 44631 10644219 ~ 10644552 (-)
G2103869 NA non-coding downstream 47068 10641904 ~ 10642115 (-)
G2103917 NA non-coding upstream 13208 10705453 ~ 10705659 (-)
G2103918 NA non-coding upstream 13481 10705726 ~ 10705929 (-)
G2103921 NA non-coding upstream 16587 10708832 ~ 10709173 (-)
G2103894 LOC106600393 non-coding upstream 27907 10720152 ~ 10757337 (-)
G2103897 LOC106600396 non-coding upstream 45702 10737947 ~ 10824356 (-)
G2103257 NA other downstream 482507 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 573786 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 681280 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 877325 9739138 ~ 9883971 (-)
G2103015 NA other downstream 912275 9776619 ~ 9776908 (-)
G2103920 NA other upstream 15767 10708012 ~ 10708499 (-)
G2105419 LOC104953893 other upstream 806881 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4847523 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4911440 15603685 ~ 15604463 (-)

Expression


Co-expression Network