LOC110508519 (LOC106600402)


Basic Information

Item Value
gene id LOC110508519
gene name LOC106600402
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10845215 ~ 10852874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589082.2
TTCTAACATCGCGAGAATTGAGCTGCTGTATATAGTTCCATGCGAGGAATCTCACTCTTCGCACTCCGCATCTCAAGCTGCTGCTGTAAGGATCAAGGTAGAGTGAAACTGAAGATGGCTGCAGGTAAAGCGCGCATCGGGCATCTGGCCCCTGACTTCAAGGCCACAGCAGTCATGCCAGATGGACAGTTTAAAGACCTCAGCATTTCCAACTACAGAGGGAAGTATGTGGTGTTCTTCTTCTACCCGCTGGACTTCACCTTTGTGTGCCCCACTGAGATCATCGCCTTCAGTGATGCTGCCGAGGAGTTCAGGAAGATCGGCTGCGAGGTCATTGGTGCCTCTGTTGACTCCCACTTCTGCCATCTTGCCTGGACCAACACACCTCGTAAGCAGGGCGGTCTGGGTCCAATGAAGATCCCTCTGGTAGCCGACACACTGCGTTCCATCTCCACGGACTACGGGGTGCTGAAGGAGGACGAGGGCATTGCCTACAGGGGCCTATTCATTATTGACGCCAAGGGCCTCTTGAGGCAGATCACCATCAACGACCTTCCAGTGGGACGCTCCATCGACGAGACCCTGCGTCTGGTGCAGGCCTTTCAGTTCACTGACAAACACGGAGAGGTCTGTCCCGCCGGCTGGAAACCAGGAAGTGACACCATCAAGCCCGACATCCAGAAGAGCAAAGACTTCTTCTCCAAGCAGCACTAAGACGATGAGTGTCTGCAGCCTGTTGTAGGACAACTAGAATTACAGTACATTTCAATAGAACAATAGGCTACTGCGCTTCACTATCTATGTGCCTGGGAACTGTAGAACAATGTCATCAGCATCCCATTATCTGTCATGTGTTTAGATAGAAATTATGACCAAAGAATCTAGATTAGATTGTGTTGGAGAGGTTTTAGTGTCATTAACCAggttccatccaaccttttttatgcgagtaaagtacgtCGGTTGAAAAATGTCACGACAGATCTGATGGAAACTGAATTtgtcggtaaactttccaaatgacGACAAAACAATATACGCTAGACATGGTGGTATCGtttttgtctgtaaaatgtattatgagagaaatggcagtggaaaGGCTTTTATGCGCGAATTTCAATATAATATATGTATTTTAATTATTGTCACCATCCTATCAAAGTCAATTTGGGAGTCATGTGATGacatgtgtggtcctcccaccacgactcggggaagcatgcagtttattaggctacagatgaaataagttatgaacttcacagggtggtgaatatGCCAGTTggtgagcttgatgctcctttccaatacatattgagggtcttattctggtgacatgttGATCGATgtttggctgccgtttgacaaattaAAATAATCTCGCTCTTTTGTCCATACTAACCTCATGTGTAGGCTATACCagcactgtatctgcaagctgttggctgtagcgcacgtgccaataccagagtgggcacattcgctACATAAGGCAACATTCTTTGTTACAAAACCGTCAGTAGAGTTGGAAACACATTTAACTTGTATATTTTATTTGGTACATGGGAATAGAATTGCTAAAGTAaattttatgtgcactacgtcatcttGCACAGATTTTTATCCGCGACAAGTCaatgtgatggaaacacatctctggtaAGAAAAGGTGCATATTTTAttcatgcagattttagaatattcacatgaaaatctgtcaccagtTAGATGGAAGCCTAGCTAATGATGTCACCCTATTGTTTTCTGTTGTATCATTTTGGTAACATAGTTTTTATCTTTAGGCCACAGTCTGAAATGAGGAAAAGCAGCTTTACTGGAAAAAAGTGAGGAGAAaacttttgttttttttacagtgaAAAACAAACTACTCAAATGTCCTTTCATCTTCTAAATAAAAACTTACAgagcaaa

Function

NR:

description
PREDICTED: peroxiredoxin-1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K13279 PRDX1; peroxiredoxin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589082.2 True 1935 mRNA 0.44 6 10845215 10852874

Neighbor

gene id symbol gene type direction distance location
LOC110508508 LOC106600390 coding downstream 152970 10689183 ~ 10692245 (-)
LOC110508509 LOC106600390 coding downstream 163468 10677802 ~ 10681747 (-)
LOC110508501 LOC106600384 coding downstream 304870 10535026 ~ 10540345 (-)
LOC110508159 LOC106600382 coding downstream 336866 10504714 ~ 10508349 (-)
LOC110508497 LOC106600370 coding downstream 381385 10418527 ~ 10463830 (-)
LOC110508520 LOC106600403 coding upstream 16242 10869116 ~ 10884590 (-)
LOC110508522 NA coding upstream 33753 10886198 ~ 10894141 (-)
LOC110508523 LOC106600405 coding upstream 52653 10905527 ~ 10911512 (-)
LOC110508524 NA coding upstream 119896 10972770 ~ 10985411 (-)
LOC110508527 LOC106600407 coding upstream 138221 10991095 ~ 10994103 (-)
G2103993 LOC106600392 non-coding downstream 10568 10832777 ~ 10834647 (-)
G2103897 LOC106600396 non-coding downstream 20859 10737947 ~ 10824356 (-)
G2103970 NA non-coding downstream 34674 10810038 ~ 10810541 (-)
G2103894 LOC106600393 non-coding downstream 87878 10720152 ~ 10757337 (-)
G2103921 NA non-coding downstream 136042 10708832 ~ 10709173 (-)
G2105123 NA non-coding upstream 100879 10953753 ~ 10953984 (-)
G2105190 NA non-coding upstream 220316 11073190 ~ 11073427 (-)
G2105194 tada1 non-coding upstream 225820 11078694 ~ 11078982 (-)
G2105195 NA non-coding upstream 226328 11079202 ~ 11079927 (-)
G2105197 NA non-coding upstream 227860 11080734 ~ 11081223 (-)
G2103920 NA other downstream 136716 10708012 ~ 10708499 (-)
G2103257 NA other downstream 638539 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 729818 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 837312 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 1033357 9739138 ~ 9883971 (-)
G2105419 LOC104953893 other upstream 646252 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4686894 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4750811 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4850462 15703333 ~ 15793545 (-)

Expression


Co-expression Network