LOC110508163 (LOC106569415)


Basic Information

Item Value
gene id LOC110508163
gene name LOC106569415
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11143483 ~ 11145238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110508163
ATGCCCGGGACAGAGTCTCACTGCGACGCTCAAACGACCACACCGGGCGCTGCCAgCTGTGGTGAGCTGGTGTCTGTGGGAGAGCCTGTCCTGCACCGGAAGGCTGATAGCGTCACAGGGAAGTATGGGGTGTGGCTGCAGGACCCTGAGCCCCCCCTCAATACAGCAATAAGACGGTGTGGCGCATCGACACGGTGGGCAAGGACGTCCGCCAGTGTTTGCACACGAGGACATGGAGCAGTTCGCCAAGGGCTTCCCCATGAAGGTGCTGGTGCTGCCGGTGCCTGTGGAGAGCACTGGGGCAACCCTGTACCGCGACTCCCTCTACTACCAGCGCAGACACCGCCGCACCCTGCACCGCTACGACCTGGCATTCGAGAGCCTGGCAGGACGTCTGGAGCTCCCCCACGCCGGCTTTCACGGCCAGCACCCCTACTCTTGGGGCGTCTACACAGACATCGACCTGGCGGTAAACGAGCAGTGCCCGTGGGCCATCTACAGCCCCAGCAAGGCCAAGGGAACCATCGTGGCGTCCCAGCTGGACCCTGAGAGCCTGGAGGTGAAGAGGAGTTGGGAGACCAACATCAGGAAGAACACAGTGGCTAACACCTTCGTGATCAGCGGTTGGGTCTACACAGTGGCCAGCTACACGGCCCCAGACACCACCGTCAACCACGTGTTCGACACGGCCCCCGGCCAGGGCCGAGGCATGGCGGTGCCCTTCAAGAACCACTACCGCTACAACAGCATGGTGGACTTCAACCACGCCCAGAGGAAGCTCTACGCCTGGGACAACTTCGACAGCACCTACGATGTCAGGTTGGCGAAACCTACCGGAAACAGCCAATAAGAGGAGGCTGGGTAAAGATGATGGATTTGGTGTGGAGTGCTGTTACTAAAATATGATCAACCAATATCATTACTGACAGCTTTCTAATAAGTTCATAGTGAGGCCTTTGTTTGTGTGCGTTACTCTGTCTAGTAGAATGtactaatgtaaataacatgAATCTTACAATGAAATACCTCACTACGGTGGAACTCTT

Function

NR:

description
LOW QUALITY PROTEIN: myocilin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110508163 True 1046 mRNA 0.57 2 11143483 11145238

Neighbor

gene id symbol gene type direction distance location
LOC110508530 jun coding downstream 51658 11089516 ~ 11091825 (-)
LOC110508529 LOC106569411 coding downstream 80304 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 115056 11027041 ~ 11028427 (-)
LOC110508527 LOC106600407 coding downstream 149380 10991095 ~ 10994103 (-)
LOC110508524 NA coding downstream 158072 10972770 ~ 10985411 (-)
LOC110508539 NA coding upstream 314135 11459373 ~ 11464078 (-)
LOC110508543 LOC106600422 coding upstream 370316 11515554 ~ 11518446 (-)
LOC110508547 pter coding upstream 411353 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 444870 11590108 ~ 11631741 (-)
LOC110508552 cables1 coding upstream 608837 11754075 ~ 11786100 (-)
G2105226 NA non-coding downstream 756 11142506 ~ 11142727 (-)
G2105144 NA non-coding downstream 58693 11084254 ~ 11084790 (-)
G2105197 NA non-coding downstream 62260 11080734 ~ 11081223 (-)
G2105195 NA non-coding downstream 63556 11079202 ~ 11079927 (-)
G2105194 tada1 non-coding downstream 64501 11078694 ~ 11078982 (-)
G2105230 NA non-coding upstream 667 11145905 ~ 11146181 (-)
G2105241 LOC106569416 non-coding upstream 22665 11167903 ~ 11168500 (-)
G2105221 NA non-coding upstream 28106 11173344 ~ 11175278 (-)
G2105251 NA non-coding upstream 52699 11197937 ~ 11200525 (-)
G2105254 NA non-coding upstream 65825 11211063 ~ 11211313 (-)
LOC110508522 NA other downstream 249403 10886198 ~ 10894141 (-)
G2103920 NA other downstream 434984 10708012 ~ 10708499 (-)
G2103257 NA other downstream 936807 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1028086 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 1135580 10004226 ~ 10007929 (-)
G2105419 LOC104953893 other upstream 353888 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4394530 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4458447 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4558098 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5654152 16799390 ~ 16799869 (-)

Expression


Co-expression Network