LOC110508539


Basic Information

Item Value
gene id LOC110508539
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11459373 ~ 11464078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589107.2
TGTTAATAtgggtgtgtgtagattgatgagggaaaaaaaacgattgaatccattttagaataaggctgtaacttaatacAAATTTTAAAAAAGTCTAGGGGCCTGAATACTTGTCTCTATGAATACACTTGTCTCTATGAATGACGGCTACCCCACCACCTTATCCAGACGGCCTGAATTTCTGTAGATAAGTAAAGGCTGGAGGAGTAGTTTCATTTAGACAACTAAAATCCTCGGGTTTAACTCAGGCTTCAGTAAAGCATGAAAATATCAATGTCATTGGAAATAATAAGATCACTGAACAACTTATTATTTAGATATCTTACATTCACTCAACCGATCTAGACATGAATAGCTTGCCAGATTAACAGAGGTATTCCGGGGAGTTAGAGAAACATAAATTAGGTCACTTACATTAACAGCACTACGGGACATAGTATGCTATCTAGGTTGCTAATTATGACAGGGAGGACTGGAGCAACACCAGACCAAGACAGCAATAATAAGGGAATATTTTTAAAAACAAACACTGACCATAGCTTGAGGGCAATATTCTAAACACCTGGGCTGGCCTAATCCTAGGGAGACCGATTTCTTCCATTCAGTTAGCCATAGAAATATGTCACTTATCTTGTAATATTTAGGCTTACTTTCATCCTAGCTCTCTAAGGAAATGGTTAAGAGTGCTGATCCATCACATTTAGCCCCTCCCAGGGCATCTCATAGTCTCATTGTATCATCTGATGAGCTGTTTTCATCACGAACATGAACAAATAAAAAGTACCAGTTCCCCAGGGATCACAGGTATCTTTATACAGGTATTTTGATACCAATTGTGCATTTATTCCTTGTCATTATCTTTCTATAATTTTTCTTTCTGCATTTGTTGGGAAGTgcccaagcatttcactgttagtctacactatGTTGTTTACAAGGCATGTGACAATTACAATTTTGGGCCCACTTTAGGACAGGAAAGACAACACATAAATATCTTAAAATAAATAGCCTAGTTTCCGACATGAAATAGCCTGTAACATGGTCATGGAAACCCTGTAAGAATTAAAGTAGACAGGGTGGTATTTGGCTTGAATGGAGGAAGCATTGGGAGACATTTCTCGCATAGCTTTGGAACAGTTCACCCGTCAGCTAACGCACACGTCAGATCTCTTTCGGATataaaaggaggagagggggacaccAGAGAACCCAGTAAGTCTGTAGGTAGTTTACATTGCGCATTCCGTGTGCAAACGCGTGGATTGATCTAAATTAGCCTCTATCTTTGCTAAAATTGTACCAATACTATGTCAGTAGACATGAAGATTTTGGAGCTTTCCTTTGTTGTTTTCCTCTATGGGTGTTTAAATTCGGCATCAGCATCTTGTCCCTCCGAATGTTCGTGTCCTCGTGAGGTAGGCCTTCCCAGGTGCGAACCAGGAATCAGCTTTGTGTCCGACGGCTGTGGATGCTGCGAAGTCTGCGCTCGGCAGCTCAATGAAGACTGCAGCAAGACAGAGCCATGCGACCACATCAAGGGACTGGAGTGCAATCTTGGGGCTGCTTCTGGCACAGCTAAAGGCATCTGTCGTGCCAAAACAGATGGAAGACCCTGTGAGTACAACAGCAAGATCTACCAGAATGGAGAGAGCTTCCTTTCCAACTGCAAGCACCAGTGTACGTGCATGGATGGTGCCGTGGGGTGTATGCCCCTGTGCCCCCAGCAGCTCTCCCTGACCAAACTGGGCTGTGCCAAACCCAAGCTGGTCAAAGTACCTGGTCGCTACTGTGAGGAGCTAGTCTGCCCTGAGGAGGGGAACGTGTTGGGCTCAGCCTCAGCAGACAAGGTCAGAAAAGATGGCCGCCAGGATAAACATTCCGAAGATGACCTCACAAACAAGAACGAGCTGGTGTCTGCCGACAGAGGAGGACTCAAGTCTTTACCTGCTTTCAGAAGTAAGCCTGAGAGTCGCCTGATGTCCAAGGGGAACAAGAGATGTGTGACTCAGACCACAGCCTGGTCCCTCTGTGCTAAGTCCCGTGGCACAGGAGTGTCCTCCCGGCtcaccaacaacaacagccagtgCAAGCTGGTGAAGGAGACTCGTCTCTGTGAGTTCCGCCTTGCTCCCAGTCAGCCTACTCCAGCCTCAAGAAGGGTAAGGAGTGCAGTCGTATTGAAAAGGCCAGCCCTCCATTGAAACAGACCTACGCAGTTTGCAGCAGTGTGAATAAGTTCCGTCCCAGGTACTGTGATTCCTGTCTGGACGGGCGCTGCTGCACCTCTCAGTAGACCCAGACTATGACGGTCCGCTTTGAGGACGGAGACACCTTCAGCAAGAATGTCATAGTCAGAGTCCTGTCCATGTGACTTCAACTGTTCCCATTGCAACGAGAGGCCTGTATGTTCTACAGGCTGATATCCACAAGTCCAGAGACTGAGGGGAAGGGAAGGTTGAGGGAATAAAAGTGTGGGATATGAGAGTTAGGATAACTCCAGATGTGCACCGTTATGCTGGAGACATTTATTCAGAgaatttttttaatgaattgcTTCGTAATATTGGAGCGTTACTGGTTGCTTCGATATGGAGCGTAATGCTATGTTGAAATATTTCACTTCATTGACAacttatgttttgtttattcaaaCAAGGCATGAGATGCACTAGAGTTTTGAATGCATGCCTATGTTTTTGTGTATCTattaaaaaaaaagtacattCAACATGAAAACTTTGAAAAGACAGTGTAGCTTCTTTGTGGCATCTACTAAAATGATTCATTTTCAATATCACAATATTAGTAATATTTATCtataacatttttacattttattaagATGTGATAGGCCATAATGGAAAATGATATTTGAGCATTTATGTTGTTTTATGTATGTTATtaataaaatatgtatttatgGAACCTGA
>XM_021589108.2
TGTTAATAtgggtgtgtgtagattgatgagggaaaaaaaacgattgaatccattttagaataaggctgtaacttaatacAAATTTTAAAAAAGTCTAGGGGCCTGAATACTTGTCTCTATGAATACACTTGTCTCTATGAATGACGGCTACCCCACCACCTTATCCAGACGGCCTGAATTTCTGTAGATAAGTAAAGGCTGGAGGAGTAGTTTCATTTAGACAACTAAAATCCTCGGGTTTAACTCAGGCTTCAGTAAAGCATGAAAATATCAATGTCATTGGAAATAATAAGATCACTGAACAACTTATTATTTAGATATCTTACATTCACTCAACCGATCTAGACATGAATAGCTTGCCAGATTAACAGAGGTATTCCGGGGAGTTAGAGAAACATAAATTAGGTCACTTACATTAACAGCACTACGGGACATAGTATGCTATCTAGGTTGCTAATTATGACAGGGAGGACTGGAGCAACACCAGACCAAGACAGCAATAATAAGGGAATATTTTTAAAAACAAACACTGACCATAGCTTGAGGGCAATATTCTAAACACCTGGGCTGGCCTAATCCTAGGGAGACCGATTTCTTCCATTCAGTTAGCCATAGAAATATGTCACTTATCTTGTAATATTTAGGCTTACTTTCATCCTAGCTCTCTAAGGAAATGGTTAAGAGTGCTGATCCATCACATTTAGCCCCTCCCAGGGCATCTCATAGTCTCATTGTATCATCTGATGAGCTGTTTTCATCACGAACATGAACAAATAAAAAGTACCAGTTCCCCAGGGATCACAGGTATCTTTATACAGGTATTTTGATACCAATTGTGCATTTATTCCTTGTCATTATCTTTCTATAATTTTTCTTTCTGCATTTGTTGGGAAGTgcccaagcatttcactgttagtctacactatGTTGTTTACAAGGCATGTGACAATTACAATTTTGGGCCCACTTTAGGACAGGAAAGACAACACATAAATATCTTAAAATAAATAGCCTAGTTTCCGACATGAAATAGCCTGTAACATGGTCATGGAAACCCTGTAAGAATTAAAGTAGACAGGGTGGTATTTGGCTTGAATGGAGGAAGCATTGGGAGACATTTCTCGCATAGCTTTGGAACAGTTCACCCGTCAGCTAACGCACACGTCAGATCTCTTTCGGATataaaaggaggagagggggacaccAGAGAACCCAGTAAGTCTGTAGGTAGTTTACATTGCGCATTCCGTGTGCAAACGCGTGGATTGATCTAAATTAGCCTCTATCTTTGCTAAAATTGTACCAATACTATGTCAGTAGACATGAAGATTTTGGAGCTTTCCTTTGTTGTTTTCCTCTATGGGTGTTTAAATTCGGCATCAGCATCTTGTCCCTCCGAATGTTCGTGTCCTCGTGAGGTAGGCCTTCCCAGGTGCGAACCAGGAATCAGCTTTGTGTCCGACGGCTGTGGATGCTGCGAAGTCTGCGCTCGGCAGCTCAATGAAGACTGCAGCAAGACAGAGCCATGCGACCACATCAAGGGACTGGAGTGCAATCTTGGGGCTGCTTCTGGCACAGCTAAAGGCATCTGTCGTGCCAAAACAGATGGAAGACCCTGTGAGTACAACAGCAAGATCTACCAGAATGGAGAGAGCTTCCTTTCCAACTGCAAGCACCAGTGTACGTGCATGGATGGTGCCGTGGGGTGTATGCCCCTGTGCCCCCAGCAGCTCTCCCTGACCAAACTGGGCTGTGCCAAACCCAAGCTGGTCAAAGTACCTGGTCGCTACTGTGAGGAGCTAGTCTGCCCTGAGGAGGGGAACGTGTTGGGCTCAGCCTCAGCAGACAAGGTCAGAAAAGATGGCCGCCAGGATAAACATTCCGAAGATGACCTCACAAACAAGAACGAGCTGGTGTCTGCCGACAGAGGAGGACTCAAGTCTTTACCTGCTTTCAGAAGTAAGCCTGAGAGTCGCCTGATGTCCAAGGGGAACAAGAGATGTGTGACTCAGACCACAGCCTGGTCCCTCTGTGCTAAGTCCCGTGGCACAGGAGTGTCCTCCCGGCtcaccaacaacaacagccagtgCAAGCTGGTGAAGGAGACTCGTCTCTAAGGGTAAGGAGTGCAGTCGTATTGAAAAGGCCAGCCCTCCATTGAAACAGACCTACGCAGTTTGCAGCAGTGTGAATAAGTTCCGTCCCAGGTACTGTGATTCCTGTCTGGACGGGCGCTGCTGCACCTCTCAGTAGACCCAGACTATGACGGTCCGCTTTGAGGACGGAGACACCTTCAGCAAGAATGTCATAGTCAGAGTCCTGTCCATGTGACTTCAACTGTTCCCATTGCAACGAGAGGCCTGTATGTTCTACAGGCTGATATCCACAAGTCCAGAGACTGAGGGGAAGGGAAGGTTGAGGGAATAAAAGTGTGGGATATGAGAGTTAGGATAACTCCAGATGTGCACCGTTATGCTGGAGACATTTATTCAGAgaatttttttaatgaattgcTTCGTAATATTGGAGCGTTACTGGTTGCTTCGATATGGAGCGTAATGCTATGTTGAAATATTTCACTTCATTGACAacttatgttttgtttattcaaaCAAGGCATGAGATGCACTAGAGTTTTGAATGCATGCCTATGTTTTTGTGTATCTattaaaaaaaaagtacattCAACATGAAAACTTTGAAAAGACAGTGTAGCTTCTTTGTGGCATCTACTAAAATGATTCATTTTCAATATCACAATATTAGTAATATTTATCtataacatttttacattttattaagATGTGATAGGCCATAATGGAAAATGATATTTGAGCATTTATGTTGTTTTATGTATGTTATtaataaaatatgtatttatgGAACCTGA
>TU2408099
GCTTCGATATGGAGCGTAATGCTATGTTGAAATATTTCACTTCATTGACAacttatgttttgtttattcaaaCAAGGCATGAGATGCACTAGAGTTTTGAATGCATGCCTATGTTTTTGTGTATCTattaaaaaaaaagtacattCAACATGAAAACTTTGAAAAGACAGTGTAGCTTCTTTGTGGCATCTACTAAAATGATTCATTTTCAATATCACAATATTAGTAATATTTATCtataacatttttacattttattaagATGTGATAGGCCATAATGGAAAATGATATTTGAGCATTTATGTTGTTTTATGTATGTTATtaataaaatatgtatttatgGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589107.2 False 2933 mRNA 0.43 5 11459373 11464078
XM_021589108.2 False 2890 mRNA 0.43 5 11459373 11464078
TU2408099 True 345 lncRNA 0.27 1 11459378 11459722

Neighbor

gene id symbol gene type direction distance location
LOC110508163 LOC106569415 coding downstream 314135 11143483 ~ 11145238 (-)
LOC110508530 jun coding downstream 367548 11089516 ~ 11091825 (-)
LOC110508529 LOC106569411 coding downstream 396194 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 430946 11027041 ~ 11028427 (-)
LOC110508527 LOC106600407 coding downstream 465270 10991095 ~ 10994103 (-)
LOC110508543 LOC106600422 coding upstream 51476 11515554 ~ 11518446 (-)
LOC110508547 pter coding upstream 92513 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 126030 11590108 ~ 11631741 (-)
LOC110508552 cables1 coding upstream 289997 11754075 ~ 11786100 (-)
gata6 LOC106600428 coding upstream 372569 11836647 ~ 11843807 (-)
G2105390 NA non-coding downstream 1560 11457565 ~ 11457813 (-)
G2105389 NA non-coding downstream 1889 11457278 ~ 11457484 (-)
G2105385 NA non-coding downstream 8245 11450320 ~ 11451128 (-)
G2105384 NA non-coding downstream 9948 11447528 ~ 11449425 (-)
G2105369 LOC106600419 non-coding downstream 35181 11423536 ~ 11424192 (-)
G2105402 NA non-coding upstream 8282 11472360 ~ 11473411 (-)
G2105392 LOC106600420 non-coding upstream 24698 11488776 ~ 11490190 (-)
G2105446 NA non-coding upstream 62806 11526884 ~ 11527168 (-)
G2105437 LOC106600424 non-coding upstream 73804 11537882 ~ 11546473 (-)
G2105456 NA non-coding upstream 83219 11547297 ~ 11547497 (-)
LOC110508522 NA other downstream 565293 10886198 ~ 10894141 (-)
G2103920 NA other downstream 750874 10708012 ~ 10708499 (-)
G2103257 NA other downstream 1252697 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1343976 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 1451470 10004226 ~ 10007929 (-)
G2105419 LOC104953893 other upstream 35048 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4075690 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4139607 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4239258 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5335312 16799390 ~ 16799869 (-)

Expression


Co-expression Network