LOC110508543 (LOC106600422)


Basic Information

Item Value
gene id LOC110508543
gene name LOC106600422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11515554 ~ 11518446 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589117.2
ACGAACACACGTTTCAAGTAAGTAGTGAATGTGTTCACTTTATGACAGACCTCATGTTTCTTCACAAACCTTTTTTGGCTTCAGTTGTATTTTTGCTTATCCATATCTCCATCTCACCGTTCTCTTTTTTCCTCTAGCTGGAATGGAGAACAAAACAAATGGATCAGTGGAAGCTAAACTTGTGGCGGAGAATGGCCAGCTGCCGGACCCTGCAGACTGGGCATTCACTGATGTCGTCAACTATTTCAAAGCTGCAGGATTTGATGAGCAGGCTACTGCTTTCCAGGACCAGGAAATCGATGGCAAGTCTCTGCTCCTGATGACACGGAATGATGTCCTGACTGGTCTTTCAATCAAACTGGGGCCAGCACTGAAGATCTACGAGTACCACGTGAAACCACTTCAAACTCAGCACCTGAAGAGTAATGCTAATGCACCACTGCATGCTCCTCAACGTGTAACAAGATAATCACGAGGCAGGACGGACAGACCAGTCCGAAGAGATTTATAGACCCAAGAGGACAGTGGAAGACGAAGGGGCTTAGAAAACTCTTGCGTGGTTGCATCTTGCATCCTTCTGAAAATATTATTTTACTTAAACTTAAGATGCCAAATGATTTGAGCCGTTACATTTGTTGGTAGTTAACCGAGTGGTATCAGTTTATGAAACCAAACAAGGATTTTAATTATTTGAGGTCTTGGACATCATAAGATCATTTTACAGGTCTTAAAAAGTACAGGTCGATTTTTTCTTATTCGAAGAGTTAGTCTCAAAGCAAATCAAGCAGATTCAACTGAATGGGTTATTTAATAGTGGACGATCCTTTTCAGATGGATGCAAACGGTGCACTAGATGTCTGACTTTGTGATGCGCTATCTTCTACCATCGAtcagtgtatatatgtatatatgtatatatgtatatatatatatatatatatatatatatctcaaacTATGGAACAGTTTTATGCCGGTTTGAACCATACTTACTGATCCACCATTACAGCCATTTTTCGTTTCCTAATAAGCCACTATTTAACTTAATCAAAGATGCATCTATGAACATTATGCATGTCAATTGTAAATTTAAGCACAGGGATATAGGTTGAATGTGTTCTTTGATTTCCTTATTCTTAAATATGGCATTTTACTTTCGTGTTTGATATGGATGCTTTTATCACGCATAACAGTGACATGCTGCTGCCTTTTGTGTTGTAAAGTTGCCCTGTTCACATTGCTGTTAGAAACTACTTGCATCTTAAGTAAAGATTTGAGATGTAACACTGTCAGTCTTACCCAAGAACAATTAGCAAAACACAGTCATGTAGAGAAAGAAGAATGTTAATTTCTAAATACAAAAATTCAAGAACAAtgaataaaatagaatagaaaagGCACAATCATTTACTTGAAAACCACACAGTGCCGTGAAAAATAAACCCTTCTCATCATATCCTCGGTTGGCTGAGAATAGATGGCAAGTCTTCCTGACATGTTCTACACTTCATAAGATTATGTGGCAGTGGTTTGCCGTTGGCAATGAGGAGCAGTGTTGAGGTCAACTTTTTCCCTGTAGCATCAAAACGAAGGCC
>XM_021589118.2
AGCAATTCAGGTGGTTTATAGATCAATTACACAGCGACAAGCACACGATCGTGAATAAACCGGATATTTATTTACGCCCTAAGAACTATAAAAGGAAACCAACTAGCTCACGAATTAGCAATAAAAAGATGCTCTGTAGTTTAAGGTTTCAGAAACAACTGACCATATCCAGGTAACCTCTTGACACGTCCTATTACAACGAACACACGTTTCAACTGGAATGGAGAACAAAACAAATGGATCAGTGGAAGCTAAACTTGTGGCGGAGAATGGCCAGCTGCCGGACCCTGCAGACTGGGCATTCACTGATGTCGTCAACTATTTCAAAGCTGCAGGATTTGATGAGCAGGCTACTGCTTTCCAGGACCAGGAAATCGATGGCAAGTCTCTGCTCCTGATGACACGGAATGATGTCCTGACTGGTCTTTCAATCAAACTGGGGCCAGCACTGAAGATCTACGAGTACCACGTGAAACCACTTCAAACTCAGCACCTGAAGAGTAATGCTAATGCACCACTGCATGCTCCTCAACGTGTAACAAGATAATCACGAGGCAGGACGGACAGACCAGTCCGAAGAGATTTATAGACCCAAGAGGACAGTGGAAGACGAAGGGGCTTAGAAAACTCTTGCGTGGTTGCATCTTGCATCCTTCTGAAAATATTATTTTACTTAAACTTAAGATGCCAAATGATTTGAGCCGTTACATTTGTTGGTAGTTAACCGAGTGGTATCAGTTTATGAAACCAAACAAGGATTTTAATTATTTGAGGTCTTGGACATCATAAGATCATTTTACAGGTCTTAAAAAGTACAGGTCGATTTTTTCTTATTCGAAGAGTTAGTCTCAAAGCAAATCAAGCAGATTCAACTGAATGGGTTATTTAATAGTGGACGATCCTTTTCAGATGGATGCAAACGGTGCACTAGATGTCTGACTTTGTGATGCGCTATCTTCTACCATCGAtcagtgtatatatgtatatatgtatatatgtatatatatatatatatatatatatatatctcaaacTATGGAACAGTTTTATGCCGGTTTGAACCATACTTACTGATCCACCATTACAGCCATTTTTCGTTTCCTAATAAGCCACTATTTAACTTAATCAAAGATGCATCTATGAACATTATGCATGTCAATTGTAAATTTAAGCACAGGGATATAGGTTGAATGTGTTCTTTGATTTCCTTATTCTTAAATATGGCATTTTACTTTCGTGTTTGATATGGATGCTTTTATCACGCATAACAGTGACATGCTGCTGCCTTTTGTGTTGTAAAGTTGCCCTGTTCACATTGCTGTTAGAAACTACTTGCATCTTAAGTAAAGATTTGAGATGTAACACTGTCAGTCTTACCCAAGAACAATTAGCAAAACACAGTCATGTAGAGAAAGAAGAATGTTAATTTCTAAATACAAAAATTCAAGAACAAtgaataaaatagaatagaaaagGCACAATCATTTACTTGAAAACCACACAGTGCCGTGAAAAATAAACCCTTCTCATCATATCCTCGGTTGGCTGAGAATAGATGGCAAGTCTTCCTGACATGTTCTACACTTCATAAGATTATGTGGCAGTGGTTTGCCGTTGGCAATGAGGAGCAGTGTTGAGGTCAACTTTTTCCCTGTAGCATCAAAACGAAGGCC
>XM_021589120.2
GTGCTTCTAAACCGGAACCCTGTCCCATTCGCTACGAACTGGCCAGTCAGGTTTGAGAATGGTGTGTGCGCCTGTTCACGAGCTTCTTGTCTTAGTGTCGCATGCCGACTCGCAGGTCCTTTCAACATATCCGAAAAATTGAATGAGCAATTCAGGTGGTTTATAGATCAATTACACAGCGACAAGCACACGATCGTGAATAAACCGGATATTTATTTACGCCCTAAGAACTATAAAAGGAAACCAACTAGCTCACGAATTAGCAATAAAAAGCTGGAATGGAGAACAAAACAAATGGATCAGTGGAAGCTAAACTTGTGGCGGAGAATGGCCAGCTGCCGGACCCTGCAGACTGGGCATTCACTGATGTCGTCAACTATTTCAAAGCTGCAGGATTTGATGAGCAGGCTACTGCTTTCCAGGACCAGGAAATCGATGGCAAGTCTCTGCTCCTGATGACACGGAATGATGTCCTGACTGGTCTTTCAATCAAACTGGGGCCAGCACTGAAGATCTACGAGTACCACGTGAAACCACTTCAAACTCAGCACCTGAAGAGTAATGCTAATGCACCACTGCATGCTCCTCAACGTGTAACAAGATAATCACGAGGCAGGACGGACAGACCAGTCCGAAGAGATTTATAGACCCAAGAGGACAGTGGAAGACGAAGGGGCTTAGAAAACTCTTGCGTGGTTGCATCTTGCATCCTTCTGAAAATATTATTTTACTTAAACTTAAGATGCCAAATGATTTGAGCCGTTACATTTGTTGGTAGTTAACCGAGTGGTATCAGTTTATGAAACCAAACAAGGATTTTAATTATTTGAGGTCTTGGACATCATAAGATCATTTTACAGGTCTTAAAAAGTACAGGTCGATTTTTTCTTATTCGAAGAGTTAGTCTCAAAGCAAATCAAGCAGATTCAACTGAATGGGTTATTTAATAGTGGACGATCCTTTTCAGATGGATGCAAACGGTGCACTAGATGTCTGACTTTGTGATGCGCTATCTTCTACCATCGAtcagtgtatatatgtatatatgtatatatgtatatatatatatatatatatatatatatctcaaacTATGGAACAGTTTTATGCCGGTTTGAACCATACTTACTGATCCACCATTACAGCCATTTTTCGTTTCCTAATAAGCCACTATTTAACTTAATCAAAGATGCATCTATGAACATTATGCATGTCAATTGTAAATTTAAGCACAGGGATATAGGTTGAATGTGTTCTTTGATTTCCTTATTCTTAAATATGGCATTTTACTTTCGTGTTTGATATGGATGCTTTTATCACGCATAACAGTGACATGCTGCTGCCTTTTGTGTTGTAAAGTTGCCCTGTTCACATTGCTGTTAGAAACTACTTGCATCTTAAGTAAAGATTTGAGATGTAACACTGTCAGTCTTACCCAAGAACAATTAGCAAAACACAGTCATGTAGAGAAAGAAGAATGTTAATTTCTAAATACAAAAATTCAAGAACAAtgaataaaatagaatagaaaagGCACAATCATTTACTTGAAAACCACACAGTGCCGTGAAAAATAAACCCTTCTCATCATATCCTCGGTTGGCTGAGAATAGATGGCAAGTCTTCCTGACATGTTCTACACTTCATAAGATTATGTGGCAGTGGTTTGCCGTTGGCAATGAGGAGCAGTGTTGAGGTCAACTTTTTCCCTGTAGCATCAAAACGAAGGCC

Function

NR:

description
sterile alpha motif domain-containing protein 13-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589117.2 False 1595 mRNA 0.39 3 11515554 11517357
XM_021589118.2 False 1673 mRNA 0.39 5 11515554 11518301
XM_021589120.2 True 1731 mRNA 0.40 4 11515554 11518446

Neighbor

gene id symbol gene type direction distance location
LOC110508539 NA coding downstream 51476 11459373 ~ 11464078 (-)
LOC110508163 LOC106569415 coding downstream 370316 11143483 ~ 11145238 (-)
LOC110508530 jun coding downstream 423729 11089516 ~ 11091825 (-)
LOC110508529 LOC106569411 coding downstream 452375 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 487127 11027041 ~ 11028427 (-)
LOC110508547 pter coding upstream 38145 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 71662 11590108 ~ 11631741 (-)
LOC110508552 cables1 coding upstream 235629 11754075 ~ 11786100 (-)
gata6 LOC106600428 coding upstream 318201 11836647 ~ 11843807 (-)
mib1 LOC106600429 coding upstream 387680 11906126 ~ 11994814 (-)
G2105392 LOC106600420 non-coding downstream 25364 11488776 ~ 11490190 (-)
G2105402 NA non-coding downstream 42143 11472360 ~ 11473411 (-)
G2105390 NA non-coding downstream 57741 11457565 ~ 11457813 (-)
G2105389 NA non-coding downstream 58070 11457278 ~ 11457484 (-)
G2105446 NA non-coding upstream 8438 11526884 ~ 11527168 (-)
G2105437 LOC106600424 non-coding upstream 19436 11537882 ~ 11546473 (-)
G2105456 NA non-coding upstream 28851 11547297 ~ 11547497 (-)
G2105462 NA non-coding upstream 53096 11571542 ~ 11647115 (-)
G2105515 NA non-coding upstream 143381 11661827 ~ 11662608 (-)
G2105419 LOC104953893 other downstream 15482 11499126 ~ 11500072 (-)
LOC110508522 NA other downstream 621474 10886198 ~ 10894141 (-)
G2103920 NA other downstream 807055 10708012 ~ 10708499 (-)
G2103257 NA other downstream 1308878 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1400157 10113428 ~ 10115397 (-)
G2109663 LOC106599735 other upstream 4021322 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4085239 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4184890 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5280944 16799390 ~ 16799869 (-)
LOC110508646 LOC106599672 other upstream 5737762 17254319 ~ 17260420 (-)

Expression


Co-expression Network