LOC110508609 (LOC105019392)


Basic Information

Item Value
gene id LOC110508609
gene name LOC105019392
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 14608465 ~ 14615388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589260.2
CGCATGCGCTGTTTTGTATATTCAAGCTAAACAACATGGCGGCGAAACGAATCGAGATCTTTATTTGAGTTTATAAAACGCCTTCGACGAGGATAGCAACTAATTGGCTATATTTATACAATAATACTTCTGAAATAGAGAGGtaattgtttatatatatatatttgtttttactattttctgaaAACATGAATTGTACCACGAACGTAGTGCAGGTGACGAACGTGTCGCCAAGCACAACATCCGAGCAGATGCGAATGCTGTTCGGGTTTCTTGGAACCATTGAAGAACTCAAATTGTTTCCACCAGATGAGTCGCCTCTGCCAGTGACGTCGCGTGTGTGTTTTGTGAAGTTCAAAGAGTCCGAGTCCGTGGGGGTGTCTCAACATCTGACCAACACAGTCTTCGTGGACAGGGCGCTGATCGTCGTCCCTTTTGCCGAAGGTGTTATCCCGGAGGAGGCTAAAGCTTTGTCACTGCTGGCGCCAGCAAATGCTGTTGCAGGGATTCTGCCCGGAGGAGGTCTCCTTCCAACACCAAACCCCATGTCTAATCCACAGGTAGGACTTCTCCCAACACCAAACCCCATGTCCTATCCACAGATGGGTGGCAATCCTTTCGGCGGTCCCTCCTTGGAAGCGATGGCAGCGTTCGGGTTTCCAAACCCCAATATGAATATGAACCCCCAGTCATTTCCCACTGACCAGCTTCTGAAGTTTATGTCGCAGGTGGATCCAAAAATGAACCACATGGGTGTAGGGATGAACATGAACATTAACATGAATCCGGGCCTGAAGGCAGACTCCTCCAACAAAGAGATAGAAGAGGCCATGAAGAGGGTCAGAGAGGCTCAGTCACTCATCTCTGCTGCCATCGAGCCTGGGAACAAGGAGAGCAAGAGGAAGCACTCGCGTTCCAGGTCCAGGTCTAGACGCAGAAGGTCCCGTTCTCGCTCCAGACACAGGCGTTCAAAGAGCAGGTCAAGGCGACGCTCGCACTCCAGGAACAGGAGGCGCTCCAAGAGCCCCCGAAGGAGGAGTGGGAGGTCCCACTCCAAAGACCGGAGCAGACCATCACCAAGCAAGTCCAGGGATAGGAAGAAGGAGGAGCGGGATAAAAAGCGCTCCAAAACACCTCCGAAAAGCTACAGTACTGCCAGGAGGTCTCGCAGTATCGATCGAAGGCGGAGAAGGAGTCGCAGTGCCAGCCGATCTCCTAAGAAATCCCCCAAGAGGAAAGTCTCCAGGACTCCCTCTCCTAGAAGACATAAGAAGGACAAGAAGAGGgacaaggaaagagagaaggaccgTGAGCGCAGGAGCGATAAAGACCGCAGTCGGGATGAAAGGAaggaaaagaaagaaaggagTAAAGACAAAGAAAAGGAAAGGGAGAAAACTGACGGGGAGAAAGGAGATGTAAAGACGTCTTTGCAGGTCACCAGAGACTATGATGAGGAAGAGCAGGGCTACGacagtgagaaggagagggagaggctggaCAAGAAAGATTCCGACCAGGACTCCGGAGCCCAGTCTCCTCACTCGGTGGAAGGCAATGGCACTGGGCTTTCCAAAGTCAACGGAGGCGACCACCGTGAAGAGGACGACATGGATGTCAGTGATTGAGTCACCCAATAATAGAGACCGATGTATAGACCTCTATGTACCCAACCCTCCATTGTACCAAAACCTCCATGCCCCACCGAGCTTACTGTATTCGGGCTTCATTCAACTCAACTCGATCCTTCTTTATCTCAGTTGAATTGTTAGTTTTCCTTTTGGATTGACTAGACAAAATAGATCAAGTAGAAGATGAACCGAAAGATTAACCTTCAGATTTTTCTGTATGTATTATAATTATTTGGTCCTATTTTGATGGTGAAAATGTGAAAGGGGTGGGGTTGGTTGAAACTTTTATTGCTGTAATTTGAAAGTGGATTCTATTTGGCAAAGTGTGCGACCTGATTTTCTTTTTTCAAGCATAGAGCTTACATGATGATGATGGCTTTTGTGTATTTTTTGTTTAAATCTAGTTTCTACACATTGCTAGGAGCGGAAGCAGCCAGTTACACTGCTTGACAAGTTCACCGTATGTCCATTTTCATCAGACATGGCTGCTACATAGAACAGCGCTGTGGACTTAGCTTTTTAGTATTGAGCTTCTGTACGGAAGTCGCCTCAATAAATTCACCATCTATTTTCTGTCACTCCTATACATGGTATATTGTGTTTATATCCCATCCGTTATTATACGGAAGACGTATACTTATACTGGGTCTTGTGGCGCCAAAATAATCTGTCCTATCTCTCACCTATTCACAATACCCAGTAGATCTGATGCTCGTTGTAATTCTTAGAAGTTTGTATTGTTTtatcagtgattttttttttatatacaataAAAACCTGGGGaaagattt
>XM_021589261.2
CGCATGCGCTGTTTTGTATATTCAAGCTAAACAACATGGCGGCGAAACGAATCGAGATCTTTATTTGAGTTTATAAAACGCCTTCGACGAGGATAGCAACTAATTGGCTATATTTATACAATAATACTTCTGAAATAGAGAGGtaattgtttatatatatatatttgtttttactattttctgaaAACATGAATTGTACCACGAACGTAGTGCAGGTGACGAACGTGTCGCCAAGCACAACATCCGAGCAGATGCGAATGCTGTTCGGGTTTCTTGGAACCATTGAAGAACTCAAATTGTTTCCACCAGATGAGTCGCCTCTGCCAGTGACGTCGCGTGTGTGTTTTGTGAAGTTCAAAGAGTCCGAGTCCGTGGGGGTGTCTCAACATCTGACCAACACAGTCTTCGTGGACAGGGCGCTGATCGTCGTCCCTTTTGCCGAAGGTGTTATCCCGGAGGAGGCTAAAGCTTTGTCACTGCTGGCGCCAGCAAATGCTGTTGCAGGGATTCTGCCCGGAGGAGGTCTCCTTCCAACACCAAACCCCATGTCTAATCCACAGATGGGTGGCAATCCTTTCGGCGGTCCCTCCTTGGAAGCGATGGCAGCGTTCGGGTTTCCAAACCCCAATATGAATATGAACCCCCAGTCATTTCCCACTGACCAGCTTCTGAAGTTTATGTCGCAGGTGGATCCAAAAATGAACCACATGGGTGTAGGGATGAACATGAACATTAACATGAATCCGGGCCTGAAGGCAGACTCCTCCAACAAAGAGATAGAAGAGGCCATGAAGAGGGTCAGAGAGGCTCAGTCACTCATCTCTGCTGCCATCGAGCCTGGGAACAAGGAGAGCAAGAGGAAGCACTCGCGTTCCAGGTCCAGGTCTAGACGCAGAAGGTCCCGTTCTCGCTCCAGACACAGGCGTTCAAAGAGCAGGTCAAGGCGACGCTCGCACTCCAGGAACAGGAGGCGCTCCAAGAGCCCCCGAAGGAGGAGTGGGAGGTCCCACTCCAAAGACCGGAGCAGACCATCACCAAGCAAGTCCAGGGATAGGAAGAAGGAGGAGCGGGATAAAAAGCGCTCCAAAACACCTCCGAAAAGCTACAGTACTGCCAGGAGGTCTCGCAGTATCGATCGAAGGCGGAGAAGGAGTCGCAGTGCCAGCCGATCTCCTAAGAAATCCCCCAAGAGGAAAGTCTCCAGGACTCCCTCTCCTAGAAGACATAAGAAGGACAAGAAGAGGgacaaggaaagagagaaggaccgTGAGCGCAGGAGCGATAAAGACCGCAGTCGGGATGAAAGGAaggaaaagaaagaaaggagTAAAGACAAAGAAAAGGAAAGGGAGAAAACTGACGGGGAGAAAGGAGATGTAAAGACGTCTTTGCAGGTCACCAGAGACTATGATGAGGAAGAGCAGGGCTACGacagtgagaaggagagggagaggctggaCAAGAAAGATTCCGACCAGGACTCCGGAGCCCAGTCTCCTCACTCGGTGGAAGGCAATGGCACTGGGCTTTCCAAAGTCAACGGAGGCGACCACCGTGAAGAGGACGACATGGATGTCAGTGATTGAGTCACCCAATAATAGAGACCGATGTATAGACCTCTATGTACCCAACCCTCCATTGTACCAAAACCTCCATGCCCCACCGAGCTTACTGTATTCGGGCTTCATTCAACTCAACTCGATCCTTCTTTATCTCAGTTGAATTGTTAGTTTTCCTTTTGGATTGACTAGACAAAATAGATCAAGTAGAAGATGAACCGAAAGATTAACCTTCAGATTTTTCTGTATGTATTATAATTATTTGGTCCTATTTTGATGGTGAAAATGTGAAAGGGGTGGGGTTGGTTGAAACTTTTATTGCTGTAATTTGAAAGTGGATTCTATTTGGCAAAGTGTGCGACCTGATTTTCTTTTTTCAAGCATAGAGCTTACATGATGATGATGGCTTTTGTGTATTTTTTGTTTAAATCTAGTTTCTACACATTGCTAGGAGCGGAAGCAGCCAGTTACACTGCTTGACAAGTTCACCGTATGTCCATTTTCATCAGACATGGCTGCTACATAGAACAGCGCTGTGGACTTAGCTTTTTAGTATTGAGCTTCTGTACGGAAGTCGCCTCAATAAATTCACCATCTATTTTCTGTCACTCCTATACATGGTATATTGTGTTTATATCCCATCCGTTATTATACGGAAGACGTATACTTATACTGGGTCTTGTGGCGCCAAAATAATCTGTCCTATCTCTCACCTATTCACAATACCCAGTAGATCTGATGCTCGTTGTAATTCTTAGAAGTTTGTATTGTTTtatcagtgattttttttttatatacaataAAAACCTGGGGaaagattt

Function

NR:

description
serine/arginine-rich splicing factor 11-like isoform X2

GO: NA

KEGG:

id description
K12899 SRSF11, SFRS11; serine/arginine-rich splicing factor 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589260.2 False 2422 mRNA 0.46 12 14608465 14615388
XM_021589261.2 True 2380 mRNA 0.46 12 14608465 14615388

Neighbor

gene id symbol gene type direction distance location
LOC110508607 LOC106599774 coding upstream 97270 14507547 ~ 14511195 (+)
LOC110508606 LOC106599779 coding upstream 104211 14428971 ~ 14504254 (+)
klhl14 LOC106599787 coding upstream 211368 14353445 ~ 14397097 (+)
cebpd LOC100379114 coding upstream 467780 14139650 ~ 14140685 (+)
snai2 snai2 coding upstream 634011 13971888 ~ 13974454 (+)
LOC110508610 LOC106599772 coding downstream 10617 14626005 ~ 14627454 (+)
LOC110508614 LOC106599757 coding downstream 158613 14774001 ~ 14881880 (+)
LOC110508616 LOC106599750 coding downstream 313303 14928691 ~ 14941630 (+)
exosc4 exos4 coding downstream 328121 14943509 ~ 14945337 (+)
LOC110508615 NA coding downstream 330616 14946004 ~ 14949052 (+)
G2108327 NA non-coding upstream 18465 14582076 ~ 14590000 (+)
G2108315 NA non-coding upstream 85859 14522268 ~ 14522606 (+)
G2108304 NA non-coding upstream 91683 14516542 ~ 14516782 (+)
G2108303 NA non-coding upstream 92284 14515947 ~ 14516181 (+)
G2108182 NA non-coding upstream 186883 14421051 ~ 14421582 (+)
G2108492 NA non-coding downstream 235755 14851143 ~ 14851398 (+)
G2108494 NA non-coding downstream 237012 14852400 ~ 14852621 (+)
G2108733 NA non-coding downstream 297589 14912977 ~ 14913183 (+)
G2108748 NA non-coding downstream 312064 14927452 ~ 14927734 (+)
G2107033 NA other upstream 695238 13911427 ~ 13913227 (+)
G2106557 NA other upstream 1464870 13143313 ~ 13143595 (+)
G2106549 NA other upstream 1473980 13133894 ~ 13134485 (+)
G2106548 NA other upstream 1474704 13133399 ~ 13133761 (+)
G2106543 NA other upstream 1481234 13126962 ~ 13127231 (+)
G2109948 NA other downstream 1323123 15938511 ~ 15938857 (+)
G2109955 LOC106599720 other downstream 1332920 15948308 ~ 15948861 (+)
G2110507 LOC107717027 other downstream 1832724 16448112 ~ 16448502 (+)
LOC110508278 LOC106599701 other downstream 2197206 16809471 ~ 16813125 (+)
G2111044 NA other downstream 2338396 16953784 ~ 16958852 (+)

Expression


Co-expression Network