G2105221


Basic Information

Item Value
gene id G2105221
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 11173344 ~ 11175278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2407886
GGGAGAGATTttattttagagagagagagagacacaaataaAATAACCACCGTTGTTGCAACTCAATTCCCCAATTACTCCTTACGTCCATCTATACCCTTCTACAGGCAAGATATCTTCATACCATTCGTTGATGTTCTGCTTGATATTGTATTATTTCCTTTCTACCATTAGCTTTGGCAAGACAGACTTGTAAAATCATGCCATTGAAGTGGTCTTCCAGATAAAGAAGTAGAGTGAGATGCTACTAGAGACACGGAGAGTGCTAGATTGTAACACGGTCATTATAGTCAACTGTTCTCAATCATAcctatgtttgtatgtgtatacacacacacacacacacacacacacacacacacacacacagcagaaaacaGTTTCAAAAGAGGACAGGCCCACATACACAATAACATACTGACAGAGAACACTTTAGACAAATCCACCTTAAGCTCTGGCACAGCGGCTGACTGGACTCAGgactggggaaggagagagggggggggggggggggggggggagatgtgGTGAGTGAGAAGAGGTTTTAAACAGAGAGTTCTGAAGTGGCCTGTGATCTGTCAGGAACATGGGAGGGCTTCAACCCAACCTGAGGAAAAGGCTAAATGGAACATGTCACCATGTTCTCAGTCATACAGGGATATGTGTATCCCCATAATTGTGGTAGGCAAAGTAATATCGGTGaacttgtgtctgtctgtctttgtgttggGAAtagcctccctccatctttccagCCAGCCTCTGAGTTtgagctttaaaaaaaaaggcgTGAGGAAGATGACCACCGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATAGACAGGGTTAAGTGCATTTATTGTGGCGGTTGTGTGTGAAACAATACACTGTTGGTACTGGTCCTCAGCCTTGTTATATGTGTAtcggctgctgctgctactacaacaCAGGAACAAAAATCACACAACGATCCAACATCAAATTACTCTCAAGGATCTTGGACCATGAAAACAAATAAAACAGCAACAAACGGGCAGACAGACAATACATGCACACGGGGTTGACACAGGCACacttacactctctcacacacaccctttcGTCTCTAAGAGAAGAATACCTAGGCAAAAACATACAGAAAGGGGGTGTTGTACAATGTGTAATATATAATACTAAAACGAACTTggcatatatacacatatataggCCAATTTTTCCGCCTCCCACATACACACAAGTACGTGCAGTAAAAGCTGCCTATGTGCCATGCTGCATTTGGAGTGGGTAGGGCAGTGCCACTGCTGAGCATAGATATGTAGAGAAGCAGCAGCTGGGGTGGAAGGGTTCTACGCAGGTTGAGTTCTAGGTAAGGGAGATGGAAGTTCTAGGGTCTGGAACCCAGTCGGAACTGAATCTGCTAAGAAAACCTGGACCACAAGCGAGCACAAGCGCACATaaagatatatacacacaccacaaGACAGGCACCATACTGTACATAAATACATGGACATTGATCGTCACCTGGCCTGAGGTCAGAGGGCAAAGGGTTCAATGTCTGCACTGGGGGGGCGGGTAAAGaccaaggagagagagatagaggggctTGGGGAGGATAGGGGAAGGATGAGCACTGGAGGATGAGCTAGGAGATGAACACTAGTCCCATTAGAGATCGCAAGCTCCTTGCTTATGATGGGGGAATATTTCTTGTTGGAGAAGGAGGGGGTCG
>TU2407887
GGGAGAGATTttattttagagagagagagagacacaaataaAATAACCACCGTTGTTGCAACTCAATTCCCCAATTACTCCTTACGTCCATCTATACCCTTCTACAGGCAAGATATCTTCATACCATTCGTTGATGTTCTGCTTGATATTGTATTATTTCCTTTCTACCATTAGCTTTGGCAAGACAGACTTGTAAAATCATGCCATTGAAGTGGTCTTCCAGATAAAGAAGTAGAGTGAGATGCTACTAGAGACACGGAGAGTGCTAGATTGTAACACGGTCATTATAGTCAACTGTTCTCAATCATAcctatgtttgtatgtgtatacacacacacacacacacacacacacacacacacacacacagcagaaaacaGTTTCAAAAGAGGACAGGCCCACATACACAATAACATACTGACAGAGAACACTTTAGACAAATCCACCTTAAGCTCTGGCACAGCGGCTGACTGGACTCAGgactggggaaggagagagggggggggggggggggggggggagatgtgGTGAGTGAGAAGAGGTTTTAAACAGAGAGTTCTGAAGTGGCCTGTGATCTGTCAGGAACATGGGAGGGCTTCAACCCAACCTGAGGAAAAGGCTAAATGGAACATGTCACCATGTTCTCAGTCATACAGGGATATGTGTATCCCCATAATTGTGGTAGGCAAAGTAATATCGGTGaacttgtgtctgtctgtctttgtgttggGAAtagcctccctccatctttccagCCAGCCTCTGAGTTtgagctttaaaaaaaaaggcgTGAGGAAGATGACCACCGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATAGACAGGGTTAAGTGCATTTATTGTGGCGGTTGTGTGTGAAACAATACACTGTTGGTACTGGTCCTCAGCCTTGTTATATGTGTAtcggctgctgctgctactacaacaCAGGAACAAAAATCACACAACGATCCAACATCAAATTACTCTCAAGGATCTTGGACCATGAAAACAAATAAAACAGCAACAAACGGGCAGACAGACAATACATGCACACGGGGTTGACACAGGCACacttacactctctcacacacaccctttcGTCTCTAAGAGAAGAATACCTAGGCAAAAACATACAGAAAGGGGGTGTTGTACAATGTGTAATATATAATACTAAAACGAACTTggcatatatacacatatataggCCAATTTTTCCGCCTCCCACATACACACAAGTACGTGCAGTAAAAGCTGCCTATGTGCCATGCTGCATTTGGAGTGGGTAGGGCAGTGCCACTGCTGAGCATAGATATGTAGAGAAGCAGCAGCTGGGGTGGAAGGGTTCTACGCAGGTTGAGTTCTAGGTAAGGGAGATGGAAGTTCTAGGGTCTGGAACCCAGTCGGAACTGAATCTGCTAAGAAAACCTGGACCACAAGCGAGCACAAGCGCACATaaagatatatacacacaccacaaGACAGGCACCATACTGTACATAAATACATGGACATTGATCGTCACCTGGCCTGAGGTCAGAGGGCAAAGGGTTCAATGTCTGCACTGGGGGGGCGGGTAAAGaccaaggagagagagatagaggggctTGGGGAGGATAGGGGAAGGATGAGCACTGGAGGATGAGCTAGGAGATGAACACTAGTCCCATTAGAGATCGCAAGCTCCTTGCTTATGATGGGGGAATATTTCTTGTTGGAGAAGGAGGGGGTCG
>TU2407888
GGGAGAGATTttattttagagagagagagagacacaaataaAATAACCACCGTTGTTGCAACTCAATTCCCCAATTACTCCTTACGTCCATCTATACCCTTCTACAGGCAAGATATCTTCATACCATTCGTTGATGTTCTGCTTGATATTGTATTATTTCCTTTCTACCATTAGCTTTGGCAAGACAGACTTGTAAAATCATGCCATTGAAGTGGTCTTCCAGATAAAGAAGTAGAGTGAGATGCTACTAGAGACACGGAGAGTGCTAGATTGTAACACGGTCATTATAGTCAACTGTTCTCAATCATAcctatgtttgtatgtgtatacacacacacacacacacacacacacacacacacacacacagcagaaaacaGTTTCAAAAGAGGACAGGCCCACATACACAATAACATACTGACAGAGAACACTTTAGACAAATCCACCTTAAGCTCTGGCACAGCGGCTGACTGGACTCAGgactggggaaggagagagggggggggggggggggggggggagatgtgGTGAGTGAGAAGAGGTTTTAAACAGAGAGTTCTGAAGTGGCCTGTGATCTGTCAGGAACATGGGAGGGCTTCAACCCAACCTGAGGAAAAGGCTAAATGGAACATGTCACCATGTTCTCAGTCATACAGGGATATGTGTATCCCCATAATTGTGGTAGGCAAAGTAATATCGGTGaacttgtgtctgtctgtctttgtgttggGAAtagcctccctccatctttccagCCAGCCTCTGAGTTtgagctttaaaaaaaaaggcgTGAGGAAGATGACCACCGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATTGACAGGGTTGAAGATGACCACCGATACAGCAGATACAGGCATACCAGACTCCATAGACAGGGTTAAGTGCATTTATTGTGGCGGTTGTGTGTGAAACAATACACTGTTGGTACTGGTCCTCAGCCTTGTTATATGTGTAtcggctgctgctgctactacaacaCAGGAACAAAAATCACACAACGATCCAACATCAAATTACTCTCAAGGATCTTGGACCATGAAAACAAATAAAACAGCAACAAACGGGCAGACAGACAATACATGCACACGGGGTTGACACAGGCACacttacactctctcacacacaccctttcGTCTCTAAGAGAAGAATACCTAGGCAAAAACATACAGAAAGGGGGTGTTGTACAATGTGTAATATATAATACTAAAACGAACTTggcatatatacacatatataggCCAATTTTTCCGCCTCCCACATACACACAAGTACGTGCAGTAAAAGCTGCCTATGTGCCATGCTGCATTTGGAGTGGGTAGGGCAGTGCCACTGCTGAGCATAGATATGTAGAGAAGCAGCAGCTGGGGTGGAAGGGTTCTACGCAGGTTGAGTTCTAGGTAAGGGAGATGGAAGTTCTAGGGTCTGGAACCCAGTCGGAACTGAATCTGCTAAGAAAACCTGGACCACAAGCGAGCACAAGCGCACATaaagatatatacacacaccacaaGACAGGCACCATACTGTACATAAATACATGGACATTGATCGTCACCTGGCCTGAGGTCAGAGGGCAAAGGGTTCAATGTCTGCACTGGGGGGGCGGGTAAAGaccaaggagagagagatagaggggctTGGGGAGGATAGGGGAAGGATGAGCACTGGAGGATGAGCTAGGAGATGAACACTAGTCCCATTAGAGATCGCAAGCTCCTTGCTTATGATGGGGGAATATTTCTTGTTGGAGAAGGAGGGGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2407886 False 1889 lncRNA 0.46 2 11173344 11175278
TU2407887 False 1825 lncRNA 0.46 2 11173344 11175278
TU2407888 True 1880 lncRNA 0.46 2 11173344 11175278

Neighbor

gene id symbol gene type direction distance location
LOC110508163 LOC106569415 coding downstream 28106 11143483 ~ 11145238 (-)
LOC110508530 jun coding downstream 81519 11089516 ~ 11091825 (-)
LOC110508529 LOC106569411 coding downstream 110165 11037198 ~ 11063179 (-)
LOC118944867 NA coding downstream 144917 11027041 ~ 11028427 (-)
LOC110508527 LOC106600407 coding downstream 179241 10991095 ~ 10994103 (-)
LOC110508539 NA coding upstream 284095 11459373 ~ 11464078 (-)
LOC110508543 LOC106600422 coding upstream 340276 11515554 ~ 11518446 (-)
LOC110508547 pter coding upstream 381313 11556591 ~ 11572467 (-)
LOC110508549 LOC106600425 coding upstream 414830 11590108 ~ 11631741 (-)
LOC110508552 cables1 coding upstream 578797 11754075 ~ 11786100 (-)
G2105241 LOC106569416 non-coding downstream 4844 11167903 ~ 11168500 (-)
G2105230 NA non-coding downstream 27163 11145905 ~ 11146181 (-)
G2105226 NA non-coding downstream 30617 11142506 ~ 11142727 (-)
G2105144 NA non-coding downstream 88554 11084254 ~ 11084790 (-)
G2105197 NA non-coding downstream 92121 11080734 ~ 11081223 (-)
G2105251 NA non-coding upstream 22659 11197937 ~ 11200525 (-)
G2105254 NA non-coding upstream 35785 11211063 ~ 11211313 (-)
G2105261 NA non-coding upstream 43341 11218619 ~ 11218818 (-)
G2105263 NA non-coding upstream 46273 11221551 ~ 11221780 (-)
G2105274 NA non-coding upstream 63982 11239260 ~ 11239672 (-)
LOC110508522 NA other downstream 279264 10886198 ~ 10894141 (-)
G2103920 NA other downstream 464845 10708012 ~ 10708499 (-)
G2103257 NA other downstream 966668 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 1057947 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 1165441 10004226 ~ 10007929 (-)
G2105419 LOC104953893 other upstream 323848 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4364490 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4428407 15603685 ~ 15604463 (-)
LOC110508627 LOC106599725 other upstream 4528058 15703333 ~ 15793545 (-)
G2110939 NA other upstream 5624112 16799390 ~ 16799869 (-)

Expression


Co-expression Network