LOC100305272 (dpm2)


Basic Information

Item Value
gene id LOC100305272
gene name dpm2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 619789 ~ 629216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165177.1
GGAAGTGATTCATACGCGGAAACAACACGTCAGAAATGGCCACAGGGGCAGACCAAGCAGTTGGCATGGGCCTTGTTGGCTTCAGCCTCCTGTTGTTTACATACTACACAATATGGGTAATCATTCTGCCGTTCGTGGACAGCGATCATGTGGCCCACCAGTATTTTCTTCAACGGGAGTATTCTGTCATTCTACCTGGGATCGCAGCATTGATACTGCTGCTCAGTGTAGGCACCTTCATTGGCGTGGTCACCTGGAAGAATCGCAAGCCTAAGAAGGTGGACTAAGAGGGATGGTATCACAGAGGTTAGACGGTTGAGGATGTAGAGCTAGAACTAAAGCTTCCATAGAACCTCCCTGGTTCCAACATCTTTCCAACAGTTCAGCTGAAGAAACTAAAAATAAAGTCTGGACTGCTTCTCTGGGACAGCTGATGAAAACATCTAATGACTGAAAGACATAAGATTTGAAGAGCTGCGGTCCACAACCTTCTATCCCTTATCTCCATTCAGACCCACTATGTGAAATCCTTAACCTTGCCGTTGGCAATGCATGGCTCCGGATGCTATATTTGTCCTCAAGGTGCATTGTCATTTTGCCAGAGATTAAAATCAATGAGTCGGTATTCACTGTTACTGTATGTGGTCAGAACTAGATAAAACCTGGCTTCATAATGTGGAGGGGATAAAGATTTGCTGATTTTGTTGAGTGTACTATATCAGATCTGATCAAAGTTTCACTTTGGCATCCCTTTTCATCACATCTTGGATTTAGTTTTCAGGCACTGTTTTACATCTCAATTTAAGATAAATTGGAGTGGTCACCCTTAAAGGCAGTGTTGTGTTCGAGACCACtgagactgagtcaagaccggGAGGGTGACAAGGGGTCCAAGACTGAGACCAGAAGGATGcgagtccaattcaagaccatgattgAAATTCTGTCAAAAACTCATCATCTGGTGTGTGGAACTGTGTGTTTTATTGCTGTGCTTGCTGTTAGCCATCTCTTTGAAAATAACTTGTGTGTGAAACATTGTGGTGGTTTAAAGTGGAACtaacagcattttagcaacataaCATTTGATTAAAATCTGTTCAGATACACACCCAGGAATAATATGACACTTTAAAAAAACAATGTATCCTGAAAAGCGACCACTTAGATATGGTCcttttcataaattcttagaatgtttgggaattctGTATACTAAGGCATTTGAGAAAATTCTATAGCAATGTAGATTGGGAAAGCaaaagtcagtcactcacctactcttccaatgacatgacatcctcctagcagctagctatctagctaatgtTACTGTGTTTTTAACTTGATACATAAAGATAcatgctagcctattagccacgttatgactgacttgtggtCATTGCCCTTGCTCGTTTGATTGTATTGAAATTCCTCGCCTTAGTTACATTCATATGTTTTTGTCCAGATTATTGAGTCTTTGAAACTGAAACCGTACATCCTGAATGGAGACACAGAACTATGTACAAGGCCAGCTGTGATGCACAATCTGATAGCAATATAAatttattggtgaattat
>TU2446919
GTGATTCATACGCGGAAACAACACGTCAGAAATGGCCACAGGGGCAGACCAAGCAGTTGGCATGGGCCTTGTTGGCTTCAGCCTCCTGTTGTTTACATACTACACAATATGGGTAATCATTCTGCCGTTCGTGGACAGCGATCATGTGGCCCACCAGTATTTTCTTCAACGGGAGTATTCTGTCATTCTACCTGGGATCGCAGCATTGATACTGCTGCTCAGTGTAGGCACCTTCATTGGCGTGGTCACCTGGAAGAATCGCAAGCCTAAGAAGGTGGACTAAGAGGGATGGTATCACAGAGGTTAGACGGTTGAGGATGTAGAGCTAGAACTAAAGCTTCCATAGAACCTCCCTGGTTCCAACATCTTTCCAACAGTTCAGCTGAAGAAACTAAAAATAAAGTCTGGACTGCTTCTCTGGGACAGCTGATGAAAACATCTAATGACTGAAAGACATAAGATTTGAAGAGCTGCGGTCCACAACCTTCTATCCCTTATCTCCATTCAGACCCACTATGTGAAATCCTTAACCTTGCCGTTGGCAATGCATGGCTCCGGATGCTATATTTGTCCTCAAGGTGCATTGTCATTTTGCCAGAGATTAAAATCAATGAGTCGGTATTCACTGTTACTGTATGTGGTCAGAACTAGATAAAACCTGGCTTCATAATGTGGAGGGGATAAAGATTTGCTGATTTTGTTGAGTGTACTATATCAGATCTGATCAAAGTTTCACTTTGGCATCCCTTTTCATCACATCTTGGATTTAGTTTTCAGGCACTGTTTTACATCTCAATTTAAGATAAATTGGAGTGGTCACCCTTAAAGGCAGTGTTGTGTTCGAGACCACtgagactgagtcaagaccggGAGGGTGACAAGGGGTCCAAGACTGAGACCAGAAGGATGcgagtccaattcaagaccatgattgAAATTCTGTCAAAAACTCATCATCTGGTGTGTGGAACTGTGTGTTTTATTGCTGTGCTTGCTGTTAGCCATCTCTTTGAAAATAACTTGTGTGTGAAACATTGTGGTGGTTTAAAGTGGAACtaacagcattttagcaacataaCATTTGATTAAAATCTGTTCAGATACACACCCAGGAATAATATGACACTTTAAAAAAACAATGTATCCTGAAAAGCGACCACTTAGATATGGTCcttttcataaattcttagaatgtttgggaattctGTATACTAAGGCATTTGAGAAAATTCTATAGCAATGTAGATTGGGAAAGCaaaagtcagtcactcacctactcttccaatgacatgacatcctcctagcagctagctatctagctaatgtTACTGTGTTTTTAACTTGATACATAAAGATAcatgctagcctattagccac
>TU2446920
GTGATTCATACGCGGAAACAACACGTCAGAAATGGCCACAGGGGCAGACCAAGCAGTTGGCATGGGCCTTGTTGGCTTCAGCCTCCTGTTGTTTACATACTACACAATATGGGTAATCATTCTGCCGTTCGTGGACAGCGATCATGTGGCCCACCAGTATTTTCTTCAACGGGAGTATTCTGTCATTCTACCTGGGATCGCAGCATTGATACTGCTGCTCAGTGTAGGCACCTTCATTGGCGTGGTCACCTGGAAGAATCGCAAGCCTAAGAAGGTGGACTAAGAGGGATGGTATCACAGAGGTTAGACGGTTGAGGATGTAGAGCTAGAACTAAAGCTTCCATAGAACCTCCCTGGTTCCAACATCTTTCCAACAGTTCAGCTGAAGAAACTAAAAATAAAGTCTGGACTGCTTCTCTGGGACAGCTGATGAAAACATCTAATGACTGAAAGACATAAGATTTGAAGAGCTGCGGTCCACAACCTTCTATCCCTTATCTCCATTCAGACCCACTATGTGAAATCCTTAACCTTGCCGTTGGCAATGCATGGCTCCGGATGCTATATTTGTCCTCAAGGTGCATTGTCATTTTGCCAGAGATTAAAATCAATGAGTCGGTATTCACTGTTACTGTATGTGGTCAGAACTAGATAAAACCTGGCTTCATAATGTGGAGGGGATAAAGATTTGCTGATTTTGTTGAGTGTACTATATCAGATCTGATCAAAGTTTCACTTTGGCATCCCTTTTCATCACATCTTGGATTTAGTTTTCAGGCACTGTTTTACATCTCAATTTAAGATAAATTGGAGTGGTCACCCTTAAAGGCAGTGTTGTGTTCGAGACCACtgagactgagtcaagaccggGAGGGTGACAAGGGGTCCAAGACTGAGACCAGAAGGATGcgagtccaattcaagaccatgattgAAATTCTGTCAAAAACTCATCATCTGGTGTGTGGAACTGTGTGTTTTATTGCTGTGCTTGCTGTTAGCCATCTCTTTGAAAATAACTTGTGTGTGAAACATTGTGGTGGTTTAAAGTGGAACtaacagcattttagcaacataaCATTTGATTAAAATCTGTTCAGATACACACCCAGGAATAATATGACACTTTAAAAAAACAATGTATCCTGAAAAGCGACCACTTAGATATGGTCcttttcataaattcttagaatgtttgggaattctGTATACTAAGGCATTTGAGAAAATTCTATAGCAATGTAGATTGGGAAAGCaaaagtcagtcactcacctactcttccaatgacatgacatcctcctagcagctagctatctagctaatgtTACTGTGTTTTTAACTTGATACATAAAGATAcatgctagcctattagccacgttatgactgacttgtggtCATTGCCCTTGCTCGTTTGATTGTATTGAAATTCCTCGCCTTAGTTACATTCATATGTTTTTGTCCAGATTATTGAGTCTTTGAAACTGAAACCGTACATCCTGAATGGAGACACAGAACTATGTACAAGGCCAGCTGTGATGCACAATCTGATAGCAATATAAatttattggtgaattatattatgGTATGGTACGTTGagtcaaatataacctatttttaaaacctcttataaagatggttttgtagcataaactggg
>TU2446922
GTGATTCATACGCGGAAACAACACGTCAGAAATGGCCACAGGGGCAGACCAAGCAGTTGGCATGGGCCTTGTTGGCTTCAGCCTCCTGTTGTTTACATACTACACAATATGGGTAATCATTCTGCCGTTCGTGGACAGCGATCATGTGGCCCACCAGTATTTTCTTCAACGGGAGTATTCTGTCATTCTACCTGGGATCGCAGCATTGATACTGCTGCTCAGTGTAGGCACCTTCATTGGCGTGGTCACCTGGAAGAATCGCAAGCCTAAGAAGGTGGACTAAGAGGGATGGTATCACAGAGGTTAGACGGTTGAGGATGTAGAGCTAGAACTAAAGCTTCCATAGAACCTCCCTGGTTCCAACATCTTTCCAACAGTTCAGCTGAAGAAACTAAAAATAAAGTCTGGACTGCTTCTCTGGGACAGCTGATGAAAACATCTAATGACTGAAAGACATAAGATTTGAAGAGCTGCGGTCCACAACCTTCTATCCCTTATCTCCATTCAGACCCACTATGTGAAATCCTTAACCTTGCCGTTGGCAATGCATGGCTCCGGATGCTATATTTGTCCTCAAGGTGCATTGTCATTTTGCCAGAGATTAAAATCAATGAGTCGGTATTCACTGTTACTGTATGTGGTCAGAACTAGATAAAACCTGGCTTCATAATGTGGAGGGGATAAAGATTTGCTGATTTTGTTGAGTGTACTATATCAGATCTGATCAAAGTTTCACTTTGGCATCCCTTTTCATCACATCTTGGATTTAGTTTTCAGGCACTGTTTTACATCTCAATTTAAGATAAATTGGAGTGGTCACCCTTAAAGGCAGTGTTGTGTTCGAGACCACtgagactgagtcaagaccggGAGGGTGACAAGGGGTCCAAGACTGAGACCAGAAGGATGcgagtccaattcaagaccatgattgAAATTCTGTCAAAAACTCATCATCTGGTGTGTGGAACTGTGTGTTTTATTGCTGTGCTTGCTGTTAGCCATCTCTTTGAAAATAACTTGTGTGTGAAACATTGTGGTGGTTTAAAGTGGAACtaacagcattttagcaacataaCATTTGATTAAAATCTGTTCAGATACACACCCAGGAATAATATGACACTTTAAAAAAACAATGTATCCTGAAAAGCGACCACTTAGATATGGTCcttttcataaattcttagaatgtttgggaattctGTATACTAAGGCATTTGAGAAAATTCTATAGCAATGTAGATTGGGAAAGCaaaagtcagtcactcacctactcttccaatgacatgacatcctcctagcagctagctatctagctaatgtTACTGTGTTTTTAACTTGATACATAAAGATAcatgctagcctattagccacgttatgactgacttgtggtCATTGCCCTTGCTCGTTTGATTGTATTGAAATTCCTCGCCTTAGTTACATTCATATGTTTTTGTCCAGATTATTGAGTCTTTGAAACTGAAACCGTACATCCTGAATGGAGACACAGAACTATGTACAAGGCCAGCTGTGATGCACAATCTGATAGCAATATAAatttattggtgaattatattatgGTATGGTACGTTGagtcaaatataacctatttttaaaacctcttataaagatggttttgtagcataaactgggaattttatatttttgacagattttatgattgtctgtttcatatctgcgaagtagttaaaacgctgtcagtGCCTCTTTAGGTCACTGGTTACTTTGTATGCAAACATGAAATGTtttttgcaatgggaagtaatagttGT

Function

symbol description
dpm2 Predicted to enable enzyme regulator activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of dolichol-phosphate-mannose synthase complex. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iu. Orthologous to human DPM2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory).

NR:

description
dolichol phosphate-mannose biosynthesis regulatory protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165177.1 False 1581 mRNA 0.41 4 619789 628997
TU2446919 False 1377 lncRNA 0.42 4 619793 628797
TU2446920 False 1656 lncRNA 0.41 4 619793 629076
TU2446922 True 1796 lncRNA 0.40 4 619793 629216

Neighbor

gene id symbol gene type direction distance location
LOC110509291 LOC106562839 coding upstream 5206 536258 ~ 614583 (+)
LOC110509495 LOC106562838 coding upstream 89691 528067 ~ 530098 (+)
LOC110509491 LOC106562835 coding upstream 174807 438137 ~ 444982 (+)
LOC110509488 set coding upstream 328763 287196 ~ 291026 (+)
LOC110509486 LOC106562830 coding upstream 470531 131779 ~ 149258 (+)
LOC110509496 LOC106562840 coding downstream 3024 632021 ~ 650126 (+)
LOC110509498 LOC106562841 coding downstream 62744 691741 ~ 694348 (+)
LOC110509499 LOC106562841 coding downstream 65530 694527 ~ 703826 (+)
LOC110509503 LOC106562869 coding downstream 206831 835828 ~ 844013 (+)
LOC110509506 LOC106562870 coding downstream 642499 1271496 ~ 1429741 (+)
G2139362 NA non-coding upstream 16856 602244 ~ 602933 (+)
G2139328 NA non-coding upstream 88602 458877 ~ 531187 (+)
G2139281 pol3 non-coding upstream 240856 378711 ~ 378933 (+)
G2139267 NA non-coding upstream 259467 352002 ~ 360322 (+)
G2139198 LOC106562832 non-coding upstream 286875 315974 ~ 332914 (+)
G2139436 NA non-coding downstream 89306 718303 ~ 718546 (+)
G2139437 NA non-coding downstream 91614 720611 ~ 720927 (+)
G2139438 NA non-coding downstream 94086 723083 ~ 723874 (+)
G2139439 NA non-coding downstream 95041 724038 ~ 724393 (+)
G2139512 NA non-coding downstream 197790 826787 ~ 827022 (+)
G2139202 NA other upstream 294741 324366 ~ 325048 (+)
G2139145 NA other upstream 460956 158015 ~ 158833 (+)
G2139520 LOC106562868 other downstream 223252 852249 ~ 853787 (+)
LOC110509295 LOC106562719 other downstream 943550 1572502 ~ 1618684 (+)
LOC110509554 LOC105007341 other downstream 1309387 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2454220 3083217 ~ 3083571 (+)

Expression


Co-expression Network