LOC110509499 (LOC106562841)


Basic Information

Item Value
gene id LOC110509499
gene name LOC106562841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 694527 ~ 703826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590394.2
ACCCAATCAAACTGTTTCCCTTGTCAGCGCATTTTCGGGACAAATTGGAGAAAATCCCTGCATATTGCCATGCAAAATGTCAGAACTGTCACAGCAGAATCAAACATTTTTGTCTGCAAATATCACATAAAATCCCCCTGAAGTCCTGGAGGGACtgaatgtgtgtacagtatatgcgtGTTTACAAAAGGTCACAAATGCAGACTCAACATGTACACCACAAACTAAAAAGACAAAAAGAGGTCTCCTGCTTCTCTAACTGTATCCTAATTTCATGCTTTCCCCTAGGGTGTGGAGGAGCACCAGAGCCTTTTGATGGAGAAGCAGGAGGAGCTGGCCCAGCTCCAAGGGGAGCACCAAACCAAGCTGCTGGAGGCCCAGAAGCTGCAGCGCTCCCTGGGCAGGCAGAAGCAGGAGCTGTCTGACCTGCAGCAGGCCAAGGAGCAGCTGGACCAAGAGCTGGAGGAGTTGCAGCAGCAGAAGGTCGACAAGGCCCTCAATGAGGTGCAGAACCAGCTGAAGAAACTGACCGGGGAGCCGGGCGAGAGGGAGAGCAGCCTGAAGCAGCAGTACCAGGAGCTGCTGGAGCAGACCAAGAGGAGGCTGCAGGGCCATGAGGTCACCATCCAGCGCCTCACCACTTGCCTGACCGACAAGGAGCAGCAGCTGCAGgaGTACATGAACATAACGAGAGACATGGAACAGAGCAGAAGTCCTGGGGGAAGCGACACCATGCTGTCGAAGCTACGAGAACAactgaaacagaaagagaaggcTCTGGAGGAAGCGCTGGATGATAAGTTTGCGGCTCTAGAAGAGAAAGACAATGAGATCCACCAGCTGCACCTGTCACTCAGGGAGAAGGCGAGGGACCTGGAGAGACTCAACAAACTGCTGTCTTACAATGAGGACACCATCAATAGTTTTGACACGTTGATAAAGGAGAAGGACGTGGAGCTACAGTACCTTGTGAACATGCTGAAAAACCTGCAGCAGGCCAAGCAGGACGTGGAGGACAACCTGAACTGGGCCTGCAAGGAGAAGGATGCCATCATTAGCCAGCTGCAGCTCTGCCTGGAGTGCAAGACCAAGGACATGGAGGAGATGGCGAATGCCCTGCTtagtcagtcccagtctcaggccTGTGACCTTGCAGAGCAGATGGGTCAGAGGTTAAAGGTGACAGAGGCCATGCTGGCGGAGGCAGTCAAGGCCCGGGAGAGGCTGGTGGAGAACAACAAGAGCACCGTGGAGGGCCTGCTGTCCACCATCAGCAGCAACGACCAGCTGCTcaatGAGTCAGCGGAGCACTATAACCGCACACTGTCTGAGCGCACCCAGGAGATCCAGGAGCTGAAGCGGCAGCTGTTTGTCCGGCAGCAGCAGCTGGCCTTGGCAGAGAAACAGAGTTCTGAGGCAACACAGGAGGGTTACCTGGAGACTGCCGAGCTCAGGGCCCTGCTGACGGAGAAGGACTCCATCATCAACAAACTTCTGGAGCGTgggcaggagagagaccagttcCTGGCTGAGTTAGGGCAGAAGGAGCCTGCACCGCCCCAGGTGATGGAGATCAGACAGACCATCAAAGTTCTGCaggagaggctggaggagagggaagCGCAGCTCTCCAAGAAGAACAACGAGGACAACATGGAGAAGGTCCCTCTCACTAAGAATACTCTGGTCATCCTGAAGAAGGAGCTAGCTCACAAGACTGATGCTCTCAAGAAGGCTCTGAAGAGGGAGAATGACCTCAAAGTGAACTAAAAGAACACACGAACAACCCTGCTCATTCAAGATGTCCCTGGCTGATCTCGAGTCAGTGTTGTCAGAGCTGAAGGAGCGTATCGAGGTCCAGGCGGTCAGTATAGACACCCTCACCACCACCCTTGGGACCAAAGACAAGATTATAAATGAGTGGACGGCCAGTGGCATCTTCACACACTGCTACTAAtcaacacacactcatacacacattcAAACAGGCTCATTAGGTTACCTGGTGCCATTTGGGTTCACGGGTAGCTTTCATAGGGTTAATCCATTTGACTAACCTTGAACTGAACTTATCCATCACCACCTGTTCTACTCTTGAGCGTGGCTTTAAAGTTGAAACCATGTATTGCATTCGTTGTAAATTGTAAAAGGAAATTGGGTGAACATGTCTGGGCAATACATTTACTTCAATACGTTTGTTTTTTCAACCCTTTAAGGGCACGTTTTAATTTGCTGTAAGTTTCCCTCAGTCTCTGCTatagtgcctttagaaagtattcataccccttcactttttccacattttgttgttgcagCCTGAATCTAAATTGATTAAAGTGAGATTTTGTGTTAtcggcctacacacaatacccctataatgtcaaagtggaattatgttcttagaaatgtttactaattAATTAAAAAGGAAaaacaac

Function

NR:

description
myomegalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590394.2 True 2438 mRNA 0.50 10 694527 703826

Neighbor

gene id symbol gene type direction distance location
LOC110509498 LOC106562841 coding upstream 179 691741 ~ 694348 (+)
LOC110509496 LOC106562840 coding upstream 44401 632021 ~ 650126 (+)
LOC100305272 dpm2 coding upstream 65530 619789 ~ 629216 (+)
LOC110509291 LOC106562839 coding upstream 79944 536258 ~ 614583 (+)
LOC110509495 LOC106562838 coding upstream 164429 528067 ~ 530098 (+)
LOC110509503 LOC106562869 coding downstream 132002 835828 ~ 844013 (+)
LOC110509506 LOC106562870 coding downstream 567670 1271496 ~ 1429741 (+)
LOC110509509 LOC106562874 coding downstream 815590 1519416 ~ 1532574 (+)
LOC110509512 LOC106562877 coding downstream 850799 1554625 ~ 1558840 (+)
LOC110509295 LOC106562719 coding downstream 868676 1572502 ~ 1618684 (+)
G2139362 NA non-coding upstream 91594 602244 ~ 602933 (+)
G2139328 NA non-coding upstream 163340 458877 ~ 531187 (+)
G2139281 pol3 non-coding upstream 315594 378711 ~ 378933 (+)
G2139267 NA non-coding upstream 334205 352002 ~ 360322 (+)
G2139436 NA non-coding downstream 14477 718303 ~ 718546 (+)
G2139437 NA non-coding downstream 16785 720611 ~ 720927 (+)
G2139438 NA non-coding downstream 19257 723083 ~ 723874 (+)
G2139439 NA non-coding downstream 20212 724038 ~ 724393 (+)
G2139512 NA non-coding downstream 122961 826787 ~ 827022 (+)
G2139202 NA other upstream 369479 324366 ~ 325048 (+)
G2139145 NA other upstream 535694 158015 ~ 158833 (+)
LOC110509486 LOC106562830 other upstream 545274 131779 ~ 149258 (+)
G2139520 LOC106562868 other downstream 148423 852249 ~ 853787 (+)
LOC110509554 LOC105007341 other downstream 1234558 1935597 ~ 1941376 (+)
G2142277 NA other downstream 2379391 3083217 ~ 3083571 (+)

Expression


Co-expression Network