LOC110509513 (LOC106562718)


Basic Information

Item Value
gene id LOC110509513
gene name LOC106562718
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1654592 ~ 1662205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590418.2
ttattttcctgtcaccactctgccagggccctcacctcctccctgtaggctgtcttatcACTGTAGTTAATCAGGTCTACAACtgctgtgtcgtctgcaaacgtaaTGATTGAGTGGCCACCCAGTcatacacaaaatagcacaattgttcAGGAGCCCATAAAATGTCTGCTATTCCCTCCAGCGTCAAACCTTGATTAGATAGGGATTGTATCATACTGATCAGATCACAAAACCTACATGTTAATGCAAGGTGTAAacgaagctagagagagaggagagagagagcgagcgagagagacaccaGGCCAGCCCCTCCAAAATGTGCGTCAGTGAAAGTGTTTAGACTGGGGATCCagcccactcacacacactttcccgTTAGGCACACATCAACAGCAGTACTTAATTTGGGAATGGGAAGATCATACCAAATAATGATGTTAGAGAACAAGGTTTTTTCCTGTTTTGTATTCTATAGTGTTCTCCTGGTAATCAAGATGTACATCATAGCAATCATCACTGGACAAGTAAGGCTGCGCAAAAAGGCTTTCGCGAACCCAGAGGACGCGCAGAGACATGGTGGCCTCCAGCACTTCAGAGAGGATCCAGATGTAGAGCGGTGCCAAAGGGCTCACCGTAACGACATGGAGAATATCGTCCCCTTCCTGTTCCTGGGGGCCGTCTACTCCCTGATTGGCCCGTCGCTGGCCGTGGCCCGCGCTCACTTCCTGGTCTTCTTCCTATTCCGCATGCTCCATACGCTGGCCTACCTCTGTGTCCTGCGGGCACCCACGCGCTCCCTGGCCTACGTGATCGCCCAGGTGCCCTGCATCTCCATGGCCGTTCAGATTCTCGTGGCGGTGTCCTCGTATGCGTGTTCTGACTTTATTGGTGACGTCGTCAATCTGTGACCAATCTCAGTGGATAATTAGGGCCTGATAAGAGCAGTAGAGAATACTGCTTGTAAGAGGGAACAGATATTTTTCATATGAGGGAAATCCTAAAGACTGCATTGTCATCAGACTGCAATGCTACAATAGCAGTTTGTGCCTCTCAGCAATGCTCTCTGAAGTGTACACTGTTGTGCCCTAGCTAGTACATCTTCATGTAGTACTGTATTCTTTTACATCTTAGTCACATAGCAGACggttttatccagagcaacttgcagatgccttgctcaagggcacatagatagatgtttcacctagttggctcggggatttgaaccagcaacctttcagttactagcccaatgctctgaACCGCCAGGCTACCTATATGCTACAGAATGCTGAAGTCAATTGACTCCCTCTGAAGGTCATGGGGACACTACTCTCGGAAGAAAAAGGTTAACCTTTCGATTAACATGTAACTTTGTAATCAATTAATTGggttgacatgttttttttcatACACAAGTCAATGTTACTTGTTTTCATCTTTTACATTCTGTATTTCTTGTCATTCAACAAGTGATAATTTTTGTAGGAAAGTCTGGGATGTAGTGACCTATTTGCTCAAACCAATCCAGTATTTTAGAAGTTGAACTGAAGAGCAGACATGTATAACACAAATCATTTATAATAAtgcattttttaaatgaaaacagAAGAAAACGATGGAATACCATATTCTAAGGAATATTTCTGGTGTGGTGGTCACTGTATTTGTTTACAAAGCATTGGCCACTAAGCTATCACATGATGGAGGATGATGACTATGTCAGATATGTCAGGTCTACCACTTCTGTCGATGGGCTACGGAAGGGTTAGGAGGTTTGTCCTGATCACAGGACTTGACTCACTAGGGCCCATAGTTTTTTCTGGTCCGTTCCTGGACCTAGATAGGATCTATGACTGCTGACTGATCCATAATCATAACATCTACAGATGCTGAATCTTAACGTGAtcatcctgttgttgcaggaattttcctgcacagcaagaaatgcaaacttttagtgtattcaaggttttttAAGGCtatctaaagtttgtaatttccatgtACTGTGATCTGCACAaccaaaaatgtatcaacccctaagAAAATGTCAATtccaattcacatttcctgttgctgcaggattatttttctcCTGTGTAAAACTGGCTCAATTTAAGATACGGCATCTGTATTTTAACCTCAACCTTTGTGTTTCTTTAGCCTGTTTACAGATCCTCTGGCAAGACTGCAAAAACAGATCTTGGATCAGGCCAATGTTTCTAGAGTACTGTCCATCTATAACCAATAGATGGTTTGTCCATAAATGCTATTGTGTGTTCTACACTGCAGCCCTTTGAGGCTTGCTAGAGCAGAAGATGATATTGTGTAAACCTACGTGTTTCAATTGGGAATCATTACTGAACAGTTACGACACAGTTCCAACTTACTGCAACACAGTTCCAAGTTGGAACACAGTTTCAGGCCTCTGgattataattaagcaatatgTGGCTAGGTACAAGCTTATCAATAGACCACCATTAgttcctcagacagacagacttttgTCCTGGAAGTTGTTCCTTCCTCTGACTTGGGGCTGCTAGCTAATCTCATTCGGGGCTAGGGGTAAGACATTGGAATCTCTGGCTGGGGGAAGGTGATTGTCGTAGGTGGGACGGTGGGTATTcgctgacctctctctctgtgtctgatgGTCCAGAGTTCCAGGCAGGGCTGAGTTCCAGAATTCCTCTGTTGTTATGTAAGGCCCTGGACTGGACACTGTCCACAGGAAGGGgctagggggggggggctggaaaATGTGCAGTCATGCATGCTTGCTGCTAACCTACACACAGTCATAGGCTGTAGACTCTTCCTCATACTCATTTAAACACGCTCTCACATTCACACATGGATATGTGCCCAGTCTGTAGCTTACTGTATAGGTGTTCACAATTACATGCATTCTTGCACTTCACCCTCTTTATGTCTCATTCATATTAACACACTTACATACTCTCACTGTACATGACAATTAATTTTACATACCAACTGCAAGGTATTcaaaataaatatgtattttttctaTGGATGACTTCATCTTGTATCAATTCAATGTACAGTCAATAGGATGTTATTGACTGTGTTAGGTAGCAGGGGACaagccatgtctctctctgtgtgcactTAGCCGTGGAAAGGAGTTTGGTGGGTGGGGGGATACCATTTGTTATTTGTTTTGCCCATGCTGAGGACCGCTATATCGGTCCACTAATATAGGACTAGTACTTATTTTGTGAACAAAAATGAATTAAATGTATTTGAGTGTTTACAAGCATTTGTAActtgagtctgataattatctgtacaaaacaTTTAATCTGATAATACTTGTGGAATATAGAAATATTTGCTTAAAA

Function

NR:

description
prostaglandin E synthase-like

GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590418.2 True 3377 mRNA 0.43 3 1654592 1662205

Neighbor

gene id symbol gene type direction distance location
LOC110509295 LOC106562719 coding upstream 35908 1572502 ~ 1618684 (+)
LOC110509512 LOC106562877 coding upstream 95752 1554625 ~ 1558840 (+)
LOC110509509 LOC106562874 coding upstream 122018 1519416 ~ 1532574 (+)
LOC110509506 LOC106562870 coding upstream 224851 1271496 ~ 1429741 (+)
LOC110509503 LOC106562869 coding upstream 810579 835828 ~ 844013 (+)
LOC110509514 LOC106562918 coding downstream 58786 1720991 ~ 1760307 (+)
LOC110509515 LOC106563008 coding downstream 99058 1761263 ~ 1775741 (+)
LOC110509516 LOC106569151 coding downstream 120933 1783138 ~ 1821590 (+)
LOC110509558 cnnm3 coding downstream 164306 1826511 ~ 1852848 (+)
LOC110509557 LOC106562915 coding downstream 210808 1873013 ~ 1876963 (+)
G2140609 NA non-coding upstream 1749 1652607 ~ 1652843 (+)
G2140605 NA non-coding upstream 14154 1640206 ~ 1640438 (+)
G2140581 NA non-coding upstream 15324 1637304 ~ 1639268 (+)
G2140580 NA non-coding upstream 18767 1621003 ~ 1635825 (+)
G2140593 NA non-coding upstream 40718 1612314 ~ 1613874 (+)
G2140667 NA non-coding downstream 160641 1822846 ~ 1826321 (+)
G2140692 NA non-coding downstream 201837 1864042 ~ 1864303 (+)
G2140693 NA non-coding downstream 202185 1864390 ~ 1864645 (+)
G2140698 NA non-coding downstream 205183 1867388 ~ 1867612 (+)
G2140699 NA non-coding downstream 205512 1867717 ~ 1867950 (+)
G2139520 LOC106562868 other upstream 800805 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 1063788 536258 ~ 614583 (+)
G2139202 NA other upstream 1329544 324366 ~ 325048 (+)
LOC110509554 LOC105007341 other downstream 276179 1935597 ~ 1941376 (+)
G2142277 NA other downstream 1421012 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1656744 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3365546 5027751 ~ 5028239 (+)
G2144416 NA other downstream 3372984 5035189 ~ 5035913 (+)

Expression


Co-expression Network