LOC110509515 (LOC106563008)


Basic Information

Item Value
gene id LOC110509515
gene name LOC106563008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1761263 ~ 1775741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471439.2
tcgagggaaagatgaacggagcaaagtacagaaagattcttgatgaaaacctgctccagagtgttcaggacctcagactgggacaaaggttcaccttccaacaggacaatgaccctaagcacatagccaagacaacacaggagtggctttgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgatctaacatctctggagagacctgaaaatagctgtgcagcaacgctccccatccatcctgagagcttgagagtatctgtACACCTCCCCCACACACGCATTGTGTCACCTCAATGCTTCCATATATGGTAGTGTTATACGTTCTAGTTCCCATGTCCTGTCCAGCAGTAACAGGATGTGCTGCataaataaatgactgatttaaaGGTGGCTGCTGTATCCTCACTAGCACATTGCTTAGCTTACCTGATAGTttctgtcctcagtgattctaCATTTTCTATTGTGAGGACTGTGCCCTGTCTTGTTGAAATGTCAGTCACTTACAGAATCGTATGTACAGTATTTAGGCCCCAGACCTGGTAGAAATGGGTAGTTTGTCTAAGAGAGTGACGTTGCCATTAATCACCAGGTTAAGGTCATGTTTCGTCTTCttgtggttaaggtttgggttaggtgATATGTGGTTACGGGTAACTGCTGCCGTGACTCATGTATGTGCTATAAGCTGACTGTGAATCGGGACTAGTCAACATATTTTGATTTTGTATTAATCAAATGAGATCTTTAAGTTCTTGTTAGGAGTTCCAACTGTTAGCTAAAGTAAATGCTCCATTGATGTGAACATCCACATGAGAGATGGAGAGCGTGAGaatagttttttagaaatgtacaTAAATGATAGATTTTCTGTCATTTGTATCAGGAGTACATTTGTTTTCGAGGTAAAAAATGTATTCTTCTCACTATTAGTGATTTAAGAGAACTTTACAATTAGTAAACTTTCcaattcaaataataataatccaatTCAAATGATATTTTTGCTTTCAAAAAAAAGGTTAAAATGTATTGTTTGATGTAATTCACCCGTATTTATTCATTAACACCAGCTTTATTTGGTAAACCTGGTATCTGGGTCTCATTGAGCTCTTCAAACAATATTCATTTATAAATATTTCACCTTTACTAAATAAAATCATAGCTTTAtgtaaattgcttttgtttttctGATTTAGTTTTATTGACTGCTGGATTGTCTTTTCCCCTGCTGCCTGTTTGGCTGTTTCTTTCTACTTCATTCACCCACCAATCAAGTTCGCCGTGCAGTAGGCTACAGCCATCAGAGATGGTAGTAATGTTGTTAGAACTACAGCATCCTCATACATCTATGAAGTTCTGATAATACTTATGACAGGGGTTCCCAACCTTTGTTTGACCCATGACCCCATTTTGATATAATAAAATTGCGACAGCACCATGTAAAAAAATAATCATAAGAAAACGATGTAATCAAACagccaattttttttattttttatttgtgtcCCTGACAGTCTGTTACAAGTCAGTCTGACAGTACATTCACAGTATTTCAATTTGAAGGAAGTATGGTTTGAAGTGACTAAAATTGCCCATTTTCAAATCAGGCGACCCTTAGTTTAGAAAACGCTGACTTATGAGTTCATAATGTAAGTGTAGTTGAAACatttttataatttatttttaaatgtatatgtATTCGCCAAATCTGATTGGATCATAGATGAAGACTATTGTTAGTTTGTGTAGACCCTCTCTAGTGGCACTAGTGATTAAAAATAGAAAGTGAAGTGTTCTCCAGTGCAAGGGTGCAGTACAGgcagtaagtaaacatttcacggtaattGTATTCGCTGCATGTTGGGTGCACATGAGAATTCTGCTGAAACCGAACAGACCTGTCATATTTTGTAGGACTTTTTATTTGCTTTTGTTGCAATGAGTTTACCCCCAGTATTTGATTTAGGTTCTGTCAAGTTTCTTCTGTCCCTCATGGAGATATGATTTCTCTGGTGGTGTAACTGTGTGCGACCACACTGGATTTTTTCCATTCTACAGTCAGTGGACAAGCTTCTTCCCaatttctcccctctccctccctttcctcctccctctcctctataggTTTGCCAGTGATGGGGCAGTCATTTGCTTTGGGGTGTTCATGCGGACCCAGGAGGGGGGCGGgcatcagaaggtgggggataTGCTGCAGGTGTTGCCTAGTGAACGCTACAATGCACACATGGTCCCAGAAGACCGCTTCCTCACCTGCCCCGAGCCTGGAACCTACGTGCTGCATTTTGACAACACCTACAGCTTACTCCAGTTGAAAAACATCAGCTATACTGTGGATGTTGTACTGCCAGACGGACATGTCAAGAGTCCTAGGAGTAACAGAGGGGATGGATGGCtggagtaacacacacacacacacacacacacacaaatatgagATCTGGATAGTGAAGATAgcaatgtacagtatacagtgctgtTTAAACACCACTGTTCTCAGTTATGGGCATTGATATGACTAGTAACCCACAGTTATAACTTTTCCTATTTTCtgttgacataca

Function

NR:

description
PREDICTED: SEC14-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471439.2 True 2610 mRNA 0.40 3 1761263 1775741

Neighbor

gene id symbol gene type direction distance location
LOC110509514 LOC106562918 coding upstream 956 1720991 ~ 1760307 (+)
LOC110509513 LOC106562718 coding upstream 99058 1654592 ~ 1662205 (+)
LOC110509295 LOC106562719 coding upstream 142579 1572502 ~ 1618684 (+)
LOC110509512 LOC106562877 coding upstream 202423 1554625 ~ 1558840 (+)
LOC110509509 LOC106562874 coding upstream 228689 1519416 ~ 1532574 (+)
LOC110509516 LOC106569151 coding downstream 7397 1783138 ~ 1821590 (+)
LOC110509558 cnnm3 coding downstream 50770 1826511 ~ 1852848 (+)
LOC110509557 LOC106562915 coding downstream 97272 1873013 ~ 1876963 (+)
LOC110509554 LOC105007341 coding downstream 159856 1935597 ~ 1941376 (+)
LOC110509553 LOC106562910 coding downstream 189579 1965320 ~ 2022282 (+)
G2140609 NA non-coding upstream 108420 1652607 ~ 1652843 (+)
G2140605 NA non-coding upstream 120825 1640206 ~ 1640438 (+)
G2140581 NA non-coding upstream 121995 1637304 ~ 1639268 (+)
G2140580 NA non-coding upstream 125438 1621003 ~ 1635825 (+)
G2140593 NA non-coding upstream 147389 1612314 ~ 1613874 (+)
G2140667 NA non-coding downstream 47105 1822846 ~ 1826321 (+)
G2140692 NA non-coding downstream 88301 1864042 ~ 1864303 (+)
G2140693 NA non-coding downstream 88649 1864390 ~ 1864645 (+)
G2140698 NA non-coding downstream 91647 1867388 ~ 1867612 (+)
G2140699 NA non-coding downstream 91976 1867717 ~ 1867950 (+)
LOC110509506 LOC106562870 other upstream 331529 1271496 ~ 1429741 (+)
G2139520 LOC106562868 other upstream 907476 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 1170459 536258 ~ 614583 (+)
G2139202 NA other upstream 1436215 324366 ~ 325048 (+)
G2142277 NA other downstream 1307476 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1543208 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3252010 5027751 ~ 5028239 (+)
G2144416 NA other downstream 3259448 5035189 ~ 5035913 (+)

Expression


Co-expression Network