LOC110509530 (LOC106562884)


Basic Information

Item Value
gene id LOC110509530
gene name LOC106562884
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4122406 ~ 4124726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590447.2
TGTGTGCCTAGCAAATGATTTCTTGCTCGCTTACAGAGGGAAGCGGACAGCCTTGTTCAATGTTTCACCACAGAGCTGACTTAGCCTTCGCCCCCAATAGAAATATCGTCACTTCCACTGAGAGAAAGTCGCTTTTCTGCGTCAGAGAGGAGCGGGAAACGACTAGATCACCGTCATGATCAACACGACGGAGTGTGCAGTGGATGCACAAAGTCTAATATCTATTTCCTTACGGAAGATTCACAACTCCAGGACGCAGAGAGGAGGCATCAAGCTGCACAAAAACCTCCTGGTGTCCTATGTGTTGAGGAACGCCAGGCAGGTCTACATGAACGAGAAGTACGCGGAGATTTACAGGATGCAGCAGTACGAAGAGGTGATGACCGTCTGCAACGAGATCCAGGAGTTAAACCCGCTGGATTTGGCCGAGGATTGTGAGGAGCAGAGGGGGGACTGCTGCGGCAACGGCGGGGTGAGCGAGCCGGCGAGTCTGTGTTGTGCTCTTCTGCCAGTGAGCCAACTAGTAGCAGTGCAGTCAGCGCATATGCAACCCCCCTCCGCCTGCTccgcgcctctctctctccaaagcgACGAGGTCTGCAAGGAGACAGAGCCCTCGTTTTACCAGAGCTGTTGTGCGGAGGCTTACCCTGTATCGAATTGCGAGTTTTCCCCGGTGAACAACTTACACTGCAACAAAACGACGGTGCTCGATTTGGACACGCACGTAGTGACCACTGTGGAGAATGGGTACCTTCACCAGGACTGCTGCGCGTCTCTCCAACAGTGCTGCCAGGGCGCACAGTACTCAGGCAAGAAACGCAAGGTTGACTTTGAATATTATATATCCGATATTGAGGAGGTACCGGATTTTACGCCGTGTAAAAGAGCGAAATTTGAGGATTGTTCCTATGCAAATTCGGAACACTTGGACACTTCGAACATTTCCAATCTGATCTCGATCTTCGGTTCGGGGTTTTCGGGGCTGGTGAGCAGACAGGCGGACATAGAGCAAGCCTTAGCCTTGAACGGACAGTTCTGTAGCAAACAAGCCCTATCGAGTCTTGGGGCAATGACTAGAGCTATAGTAGCTTTTTGACTCCATGGTAAACTAGAATGAAACACTTTATGAAATTGTACAAAGTATAAATCAAATCGGCTTTATTTTTTTGCAGGAAAGGGTATTTAAACATTGAACCGTTTGTTTGTTGACTTTCGTTTTCACAGGGAGTGAGAGAAATGTTGCCGCATGTGATGGGCAAGCTTTCATTTTAAACCTAAAATGTCTACATAACACATTTGACATAATAGTTGTGAATTTTATCTAACGAAGTTGATTTCGTTGCCTTAAACCCAACGCATACTACTGGTAGCTATTGTTGCTAACATTGAAAGTGGTTGAATGTCTAGATCACGGGTTATGTTATTGATCACTCCAGAACAGTTTTGAACACAATGTCTCGTTTTAAAGACACTACACAAGTAGTGTGACCGAATAGCAATCATATAATGTAGCCCCAGCTCAACCTAACTGGAAAAGTGTGGCCATGGATGGCTTTACAAAATGCTTTTGTTGTGCGTCGCAGTTTCATTCGGCAGATAACTAACAGAAAGCTGTGGCAGGCTATTTATTACACAAGCACGGTTGTGTTGTACTTGGTTATCATGCATCTATCTCTGGGTTGATATTTAAACCTTGTGTATAGAGACTCTTATTCTAAGCACATCAGTGGTAGGCTATGTTACATGGGAACTATGTGGTACATTCTCACCACATATACATTTACAGGTGAAGGCGCAATGGTTCAGACCTAAATGTCCCTATCAAACTCCTGGGTGCATTAACTCTGAACCAGCTTGCTGTGTCTCCATTGATCTGCTAGTTGTACCCAACTTCCCACCTCACCTCTGATCAGAACCATTAATTAGGGTACTCCAACTCCCAGAGTACATGTGTAATCTAATAAATCCAGGTAGTTTTTGACAGTTTTATTTGTTGAGCGCCCCCCTCCCTCTTAACCTATAACAAAAAGTTATTGATCAAGCCTTCACAGTAATTCATGATGCCAACATGGCTTGGTTTTGTgagtttttgttttattttcttaAATCTTATTACCTTTTGTTCTAAAAAGGCTCCTGATTTAGCCATACATCCACACATTATAAGCACTATGTGTACTGAAAGATGTTTCCAGATGTCCTCTTCATATTTTGTTTGTATTCTTGTATTTTTGTGCATATTAAATGGTATATCACCGGGTAAACTGTTTAAGAAAATATTTGTTAAATTTATAATCTTAATAAAAAATTGAAAACAA
>TU2451529
GTTTTACCAGAGCTGTTGTGCGGAGGCTTACCCTGTATCGAATTGCGAGTTTTCCCCGGTGAACAACTTACACTGCAACAAAACGACGGTGCTCGATTTGGACACGCACGTAGTGACCACTGTGGAGAATGGGTACCTTCACCAGGACTGCTGCGCGTCTCTCCAACAGTGCTGCCAGGGCGCACAGTACTCAGGCAAGAAACGCAAGGTTGACTTTGAATATTATATATCCGATATTGAGGAGGTACCGGATTTTACGCCGTGTAAAAGAGCGAAATTTGAGGATTGTTCCTATGCAAATTCGGAACACTTGGACACTTCGAACATTTCCAATCTGATCTCGATCTTCGGTTCGGGGTTTTCGGGGCTGGTGAGCAGACAGGCGGACATAGAGCAAGCCTTAGCCTTGAACGGACAGTTCTGTAGCAAACAAGCCCTATCGAGTCTTGGGGCAATGACTAGAGCTATAGTAGCTTTTTGACTCCATGGTAAACTAGAATGAAACACTTTATGAAATTGTACAAAGTATAAATCAAATCGGCTTTATTTTTTTGCAGGAAAGGGTATTTAAACATTGAACCGTTTGTTTGTTGACTTTCGTTTTCACAGGGAGTGAGAGAAATGTTGCCGCATGTGATGGGCAAGCTTTCATTTTAAACCTAAAATGTCTACATAACACATTTGACATAATAGTTGTGAATTTTATCTAACGAAGTTGATTTCGTTGCCTTAAACCCAACGCATACTACTGGTAGCTATTGTTGCTAACATTGAAAGTGGTTGAATGTCTAGATCACGGGTTATGTTATTGATCACTCCAGAACAGTTTTGAACACAATGTCTCGTTTTAAAGACACTACACAAGTAGTGTGACCGAATAGCAATCATATAATGTAGCCCCAGCTCAACCTAACTGGAAAAGTGTGGCCATGGATGGCTTTACAAAATGCTTTTGTTGTGCGTCGCAGTTTCATTCGGCAGATAACTAACAGAAAGCTGTGGCAGGCTATTTATTACACAAGCACGGTTGTGTTGTACTTGGTTATCATGCATCTATCTCTGGGTTGATATTTAAACCTTGTGTATAGAGACTCTTATTCTAAGCACATCAGTGGTAGGCTATGTTACATGGGAACTATGTGGTACATTCTCACCACATATACATTTACAGGTGAAGGCGCAATGGTTCAGACCTAAATGTCCCTATCAAACTCCTGGGTGCATTAACTCTGAACCAGCTTGCTGTGTCTCCATTGATCTGCTAGTTGTACCCAACTTCCCACCTCACCTCTGATCAGAACCATTAATTAGGGTACTCCAACTCCCAGAGTACATGTGTAATCTAATAAATCCAGGTAGTTTTTGACAGTTTTATTTGTTGAGCGCCCCCCTCCCTCTTAACCTATAACAAAAAGTTATTGATCAAGCCTTCACAGTAATTCATGATGCCAACATGGCTTGGTTTTGTgagtttttgttttattttcttaAATCTTATTACCTTTTGTTCTAAAAAGGCTCCTGATTTAGCCATACATCCACACATTATAAGCACTATGTGTACTGAAAGATGTTTCCAGATGTCCTCTTCATATTTTGTTTGTATTCTTGTATTTTTGTGCATATTAAATGGTATATCACCGG

Function

NR:

description
immediate early response gene 5-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590447.2 False 2321 mRNA 0.44 1 4122406 4124726
TU2451529 True 1644 lncRNA 0.41 1 4123024 4124667

Neighbor

gene id symbol gene type direction distance location
LOC110509527 NA coding upstream 390877 3705668 ~ 3731529 (+)
LOC118945361 NA coding upstream 567256 3545047 ~ 3555150 (+)
LOC118945281 NA coding upstream 753980 3322159 ~ 3368426 (+)
LOC110509524 LOC106562843 coding upstream 811232 3292190 ~ 3311174 (+)
LOC118945358 LOC106570398 coding upstream 834807 3274408 ~ 3287599 (+)
LOC110509300 NA coding downstream 45376 4170102 ~ 4207105 (+)
LOC110509532 LOC106562866 coding downstream 349908 4474634 ~ 4485633 (+)
LOC110509354 pde4d coding downstream 621624 4746350 ~ 4777161 (+)
LOC110509536 LOC106562892 coding downstream 827890 4952616 ~ 5021603 (+)
LOC110509539 LOC106562896 coding downstream 1045136 5169862 ~ 5257753 (+)
G2143545 NA non-coding upstream 7619 4114476 ~ 4114787 (+)
G2143537 NA non-coding upstream 57217 4064971 ~ 4065189 (+)
G2143381 NA non-coding upstream 137097 3980476 ~ 3985309 (+)
G2142624 NA non-coding upstream 423735 3660400 ~ 3698671 (+)
G2143568 NA non-coding downstream 8300 4133026 ~ 4133292 (+)
G2143571 NA non-coding downstream 14114 4138840 ~ 4139095 (+)
G2143576 NA non-coding downstream 21214 4145940 ~ 4146151 (+)
G2143695 NA non-coding downstream 202424 4327150 ~ 4327923 (+)
G2142386 LOC106562824 other upstream 798312 3318949 ~ 3324094 (+)
G2142277 NA other upstream 1038835 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 2181415 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 2543847 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 2692672 1271496 ~ 1429741 (+)
G2144385 NA other downstream 903025 5027751 ~ 5028239 (+)
G2144416 NA other downstream 910463 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1159135 5283861 ~ 5284603 (+)
G2144802 NA other downstream 1235260 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 1481323 5605462 ~ 5611062 (+)

Expression


Co-expression Network