LOC110509532 (LOC106562866)


Basic Information

Item Value
gene id LOC110509532
gene name LOC106562866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 4474634 ~ 4485633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968132.1
TACGGAGGTGCGAAGCAAAACGAAGCTGAGACCGCTTCCGAGAGTCTTGACAAGGGATTTGTACACGTCGAATCAATAGTAATCCCCTCTCCCTAAATTGCACACATACATAGGGCTCAGTGCTCGCCTTGCCGAAGAGCTTGATACCCGTAGGAAAACAATGTATGTTTTGCAATAGCCCTTGAACTCGAAcaattgtgtgtttttgtgcattcGTTCGTCGTCTTTGCTATTATTTTATTTTCGATTGATATTCGTTTTGGGTGTTTTGCGTCAGCATCCACGTGTAGCATTGAACGTCGCTGTTATGATTCGAGGCTTGGAGCAACTCAAGAGTGGAGGCCAGGATACCAACCACAAGTCATCTACAATTCTGCCGTGTTTTTAGTTTTCCCCCTCCTTTCTCTGTTGTTTCTGGAATACGTATTTACTCCTTCATTTATTCCTAATGCAAGTTGAACATTTGCAGTAGCTCTCGACCACTTTTGCCTGAAGACATAGAGAAAATGATCTGAGGGAGACGCTTGCAAGTGTAGCTCTCCAGCCTCCACGATGCTCTTCCACGGGCTGCTCGGAGGCGAGATGCAGGGGGTTATCTACGAGATGGGCCGGAGGGCGAAGGGCGATTCTACCGCCATCAGTTCGGCTATAGACATGGGAGAAACCGAGACGGGTATGAGGTCCATCAACAGCGACCGTGTGGCCTTATGCGCGGGCTGCGGGGGGAAGATATCTGACCGCTACTACTTGCTTGCGGTTGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGCAAACTCAACCTCGAGTCCGAGCTTACCTGTTTCAGTAAAGACGGCAGCATCTATTGCAAAGAAGATTACTACAGCAGGAGGTTTTCCGTGCAGAGGTGCGCCCGTTGCCATCTCGGGATCTCGGCGTCGGAGATGGTCATGCGGGCGAGGGACTTGGTCTATCACTTGAACTGTTTCACCTGTACAAGCTGCAACAAAATGCTCACGACCGGAGACCACTTCGGTATGCGGGACAGTCTTGTGTACTGCCGGTTCCACTTTGAGACACTCATACAAGGGGAATATCAAGCGCATTTCAATCACTCAGGGGATGTAGACTCGGGCAAAGGACTTTGCGCAGGCAGCGCGGGAAACTCGCTGGGGCAGACCTACTACAACGGCTCCCGAACCGTGCAGAAAGGAAGGCCGAGGAAAAGGAAAAGTCCCGGGCCTGGAACAGATGTGGTGGCTTACAACGCAGCATTAAGTTGCAGTGAGGATGGGGACCACCTGGACTGTGACTCCCACTACTCCTCCAGCTCCAAGTCCAAGCGCATGCGCACCTCCTTCAAACACCACCAACTGAGGACCATGAAGTCCTACTTTGCCATCAACCATAATCCAGACGCCAAAGACCTGAAACAGCTGGCCCAGAAGACGGGTCTCTCCAAACGCGTGCTGCAGGTTTGGTTCCAAAACGCCCGGGCCAAGTTTCGACGGAACATTCTACGTCAGGAGAGCACAGGACTGGACAAGCTGTTGGATGGGTCCACTCTATCAGGGGGTTCGCCTTCAGGCCCCCCCTCCGAACTGTCCAGCTCCTCAATGAGCCCTTCCAGTACCCATACCACCCTCACGGACATGACCAGCCCCTCTATGACATCGGCTAACCCTGTACTGACCGCCGTGCCGGGGGGCATGGACCTACATGACTCCATGAGTGTGAGCCCTTCCCAGACCACCCTTACCAGCCTTTTCTGATGTCACCCACCCCACCCGATCCGCCCATAAACCCATCCACCAGCTCACTCAAGAGGGAGTCACTTATATAAATGATATTCCCCTGGACCTTAGGTTTCCACCCTGTCACTCCATCCTGACCATTCTGTTTCTAGGGAGGGATTTGTAAAAGAAAAAGGGAAAAGCATTGGGGAGTGTAAAATGCAGATGCAAAGTACTGTAGCAAGGTTATCCGGAAGACTCTAGCGTGCCTTATACATTTTAATCACACGGAGGAATCCCTTCTCTGATAAATGTCTCATCTAGGTGGCATATTTCTTAAAAGATTTTGTTAAAGGACGGTTGCCCCACTGACAACTGCATTTGCTTAAGACATGGCCAACAAAGCGGATCTACTTTACAATTCAGTCTGTACAGAGTAAGGGTCTGATGTCAACAAGAACATGTATATTGATACATAGGGCATAGATGAGAATTAGAATTAAACTGATACAGTTAATATGAAGATATCATGGTCACTATCCTTTACTCAGACTTTGCTTTAATATTTTGTAACAATAAACTGTCATACACAGAAATGAGATATAATA
>XM_036968131.1
ACGGAGGTGCGAAGCAAAACGAAGCTGAGACCGCTTCCGAGAGTCTTGACAAGGGATTTGTACACGTCGAATCAATAGTAATCCCCTCTCCCTAAATTGCACACATACATAGGGCTCAGTGCTCGCCTTGCCGAAGAGCTTGATACCCGTAGGAAAACAATGTATGTTTTGCAATAGCCCTTGAACTCGAAcaattgtgtgtttttgtgcattcGTTCGTCGTCTTTGCTATTATTTTATTTTCGATTGATATTCGTTTTGGGTGTTTTGCGTCAGCATCCACGTGTAGCATTGAACGTCGCTGTTATGATTCGAGGCTTGGAGCAACTCAAGAGTGGAGGCCAGGATACCAACCACAAGTCATCTACAATTCTGCCGTGTTTTTAGTTTTCCCCCTCCTTTCTCTGTTGTTTCTGGAATACGTATTTACTCCTTCATTTATTCCTAATGCAAGTTGAACATTTGCAGTAGCTCTCGACCACTTTTGCCTGAAGACATAGAGAAAATGGTACATTTTTGTGCATCCTGAAATCTGCATATTGAGAGAGATTATTTGATTCAGAATTCACTTTGTGGTTTGCTGATCTGAGGGAGACGCTTGCAAGTGTAGCTCTCCAGCCTCCACGATGCTCTTCCACGGGCTGCTCGGAGGCGAGATGCAGGGGGTTATCTACGAGATGGGCCGGAGGGCGAAGGGCGATTCTACCGCCATCAGTTCGGCTATAGACATGGGAGAAACCGAGACGGGTATGAGGTCCATCAACAGCGACCGTGTGGCCTTATGCGCGGGCTGCGGGGGGAAGATATCTGACCGCTACTACTTGCTTGCGGTTGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGCAAACTCAACCTCGAGTCCGAGCTTACCTGTTTCAGTAAAGACGGCAGCATCTATTGCAAAGAAGATTACTACAGCAGGAGGTTTTCCGTGCAGAGGTGCGCCCGTTGCCATCTCGGGATCTCGGCGTCGGAGATGGTCATGCGGGCGAGGGACTTGGTCTATCACTTGAACTGTTTCACCTGTACAAGCTGCAACAAAATGCTCACGACCGGAGACCACTTCGGTATGCGGGACAGTCTTGTGTACTGCCGGTTCCACTTTGAGACACTCATACAAGGGGAATATCAAGCGCATTTCAATCACTCAGGGGATGTAGACTCGGGCAAAGGACTTTGCGCAGGCAGCGCGGGAAACTCGCTGGGGCAGACCTACTACAACGGCTCCCGAACCGTGCAGAAAGGAAGGCCGAGGAAAAGGAAAAGTCCCGGGCCTGGAACAGATGTGGTGGCTTACAACGCAGCATTAAGTTGCAGTGAGGATGGGGACCACCTGGACTGTGACTCCCACTACTCCTCCAGCTCCAAGTCCAAGCGCATGCGCACCTCCTTCAAACACCACCAACTGAGGACCATGAAGTCCTACTTTGCCATCAACCATAATCCAGACGCCAAAGACCTGAAACAGCTGGCCCAGAAGACGGGTCTCTCCAAACGCGTGCTGCAGGTTTGGTTCCAAAACGCCCGGGCCAAGTTTCGACGGAACATTCTACGTCAGGAGAGCACAGGACTGGACAAGCTGTTGGATGGGTCCACTCTATCAGGGGGTTCGCCTTCAGGCCCCCCCTCCGAACTGTCCAGCTCCTCAATGAGCCCTTCCAGTACCCATACCACCCTCACGGACATGACCAGCCCCTCTATGACATCGGCTAACCCTGTACTGACCGCCGTGCCGGGGGGCATGGACCTACATGACTCCATGAGTGTGAGCCCTTCCCAGACCACCCTTACCAGCCTTTTCTGATGTCACCCACCCCACCCGATCCGCCCATAAACCCATCCACCAGCTCACTCAAGAGGGAGTCACTTATATAAATGATATTCCCCTGGACCTTAGGTTTCCACCCTGTCACTCCATCCTGACCATTCTGTTTCTAGGGAGGGATTTGTAAAAGAAAAAGGGAAAAGCATTGGGGAGTGTAAAATGCAGATGCAAAGTACTGTAGCAAGGTTATCCGGAAGACTCTAGCGTGCCTTATACATTTTAATCACACGGAGGAATCCCTTCTCTGATAAATGTCTCATCTAGGTGGCATATTTCTTAAAAGATTTTGTTAAAGGACGGTTGCCCCACTGACAACTGCATTTGCTTAAGACATGGCCAACAAAGCGGATCTACTTTACAATTCAGTCTGTACAGAGTAAGGGTCTGATGTCAACAAGAACATGTATATTGATACATAGGGCATAGATGAGAATTAGAATTAAACTGATACAGTTAATATGAAGATATCATGGTCACTATCCTTTACTCAGACTTTGCTTTAATATTTTGTAACAATAAACTGTCATACACAGAAATGAGATATAATA
>XM_021590449.2
CGAGATTTGCGTCTCATGGAAGTTTTGGCTTGCAGATCTGAGGGAGACGCTTGCAAGTGTAGCTCTCCAGCCTCCACGATGCTCTTCCACGGGCTGCTCGGAGGCGAGATGCAGGGGGTTATCTACGAGATGGGCCGGAGGGCGAAGGGCGATTCTACCGCCATCAGTTCGGCTATAGACATGGGAGAAACCGAGACGGGTATGAGGTCCATCAACAGCGACCGTGTGGCCTTATGCGCGGGCTGCGGGGGGAAGATATCTGACCGCTACTACTTGCTTGCGGTTGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGCAAACTCAACCTCGAGTCCGAGCTTACCTGTTTCAGTAAAGACGGCAGCATCTATTGCAAAGAAGATTACTACAGCAGGAGGTTTTCCGTGCAGAGGTGCGCCCGTTGCCATCTCGGGATCTCGGCGTCGGAGATGGTCATGCGGGCGAGGGACTTGGTCTATCACTTGAACTGTTTCACCTGTACAAGCTGCAACAAAATGCTCACGACCGGAGACCACTTCGGTATGCGGGACAGTCTTGTGTACTGCCGGTTCCACTTTGAGACACTCATACAAGGGGAATATCAAGCGCATTTCAATCACTCAGGGGATGTAGACTCGGGCAAAGGACTTTGCGCAGGCAGCGCGGGAAACTCGCTGGGGCAGACCTACTACAACGGCTCCCGAACCGTGCAGAAAGGAAGGCCGAGGAAAAGGAAAAGTCCCGGGCCTGGAACAGATGTGGTGGCTTACAACGCAGCATTAAGTTGCAGTGAGGATGGGGACCACCTGGACTGTGACTCCCACTACTCCTCCAGCTCCAAGTCCAAGCGCATGCGCACCTCCTTCAAACACCACCAACTGAGGACCATGAAGTCCTACTTTGCCATCAACCATAATCCAGACGCCAAAGACCTGAAACAGCTGGCCCAGAAGACGGGTCTCTCCAAACGCGTGCTGCAGGTTTGGTTCCAAAACGCCCGGGCCAAGTTTCGACGGAACATTCTACGTCAGGAGAGCACAGGACTGGACAAGCTGTTGGATGGGTCCACTCTATCAGGGGGTTCGCCTTCAGGCCCCCCCTCCGAACTGTCCAGCTCCTCAATGAGCCCTTCCAGTACCCATACCACCCTCACGGACATGACCAGCCCCTCTATGACATCGGCTAACCCTGTACTGACCGCCGTGCCGGGGGGCATGGACCTACATGACTCCATGAGTGTGAGCCCTTCCCAGACCACCCTTACCAGCCTTTTCTGATGTCACCCACCCCACCCGATCCGCCCATAAACCCATCCACCAGCTCACTCAAGAGGGAGTCACTTATATAAATGATATTCCCCTGGACCTTAGGTTTCCACCCTGTCACTCCATCCTGACCATTCTGTTTCTAGGGAGGGATTTGTAAAAGAAAAAGGGAAAAGCATTGGGGAGTGTAAAATGCAGATGCAAAGTACTGTAGCAAGGTTATCCGGAAGACTCTAGCGTGCCTTATACATTTTAATCACACGGAGGAATCCCTTCTCTGATAAATGTCTCATCTAGGTGGCATATTTCTTAAAAGATTTTGTTAAAGGACGGTTGCCCCACTGACAACTGCATTTGCTTAAGACATGGCCAACAAAGCGGATCTACTTTACAATTCAGTCTGTACAGAGTAAGGGTCTGATGTCAACAAGAACATGTATATTGATACATAGGGCATAGATGAGAATTAGAATTAAACTGATACAGTTAATATGAAGATATCATGGTCACTATCCTTTACTCAGACTTTGCTTTAATATTTTGTAACAATAAACTGTCATACACAGAAATGAGATATAATA
>XM_036968130.1
CGAGATTTGCGTCTCATGGAAGTTTTGGCTTGCAGATCTGAGGGAGACGCTTGCAAGTGTAGCTCTCCAGCCTCCACGATGCTCTTCCACGGGCTGCTCGGAGGCGAGATGCAGGGGGTTATCTACGAGATGGGCCGGAGGGCGAAGGGCGATTCTACCGCCATCAGTTCGGCTATAGACATGGGAGAAACCGAGACGGGTATGAGGTCCATCAACAGCGACCGTGTGGCCTTATGCGCGGGCTGCGGGGGGAAGATATCTGACCGCTACTACTTGCTTGCGGTTGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGCAAACTCAACCTCGAGTCCGAGCTTACCTGTTTCAGTAAAGACGGCAGCATCTATTGCAAAGAAGATTACTACAGGAGGTTTTCCGTGCAGAGGTGCGCCCGTTGCCATCTCGGGATCTCGGCGTCGGAGATGGTCATGCGGGCGAGGGACTTGGTCTATCACTTGAACTGTTTCACCTGTACAAGCTGCAACAAAATGCTCACGACCGGAGACCACTTCGGTATGCGGGACAGTCTTGTGTACTGCCGGTTCCACTTTGAGACACTCATACAAGGGGAATATCAAGCGCATTTCAATCACTCAGGGGATGTAGACTCGGGCAAAGGACTTTGCGCAGGCAGCGCGGGAAACTCGCTGGGGCAGACCTACTACAACGGCTCCCGAACCGTGCAGAAAGGAAGGCCGAGGAAAAGGAAAAGTCCCGGGCCTGGAACAGATGTGGTGGCTTACAACGCAGCATTAAGTTGCAGTGAGGATGGGGACCACCTGGACTGTGACTCCCACTACTCCTCCAGCTCCAAGTCCAAGCGCATGCGCACCTCCTTCAAACACCACCAACTGAGGACCATGAAGTCCTACTTTGCCATCAACCATAATCCAGACGCCAAAGACCTGAAACAGCTGGCCCAGAAGACGGGTCTCTCCAAACGCGTGCTGCAGGTTTGGTTCCAAAACGCCCGGGCCAAGTTTCGACGGAACATTCTACGTCAGGAGAGCACAGGACTGGACAAGCTGTTGGATGGGTCCACTCTATCAGGGGGTTCGCCTTCAGGCCCCCCCTCCGAACTGTCCAGCTCCTCAATGAGCCCTTCCAGTACCCATACCACCCTCACGGACATGACCAGCCCCTCTATGACATCGGCTAACCCTGTACTGACCGCCGTGCCGGGGGGCATGGACCTACATGACTCCATGAGTGTGAGCCCTTCCCAGACCACCCTTACCAGCCTTTTCTGATGTCACCCACCCCACCCGATCCGCCCATAAACCCATCCACCAGCTCACTCAAGAGGGAGTCACTTATATAAATGATATTCCCCTGGACCTTAGGTTTCCACCCTGTCACTCCATCCTGACCATTCTGTTTCTAGGGAGGGATTTGTAAAAGAAAAAGGGAAAAGCATTGGGGAGTGTAAAATGCAGATGCAAAGTACTGTAGCAAGGTTATCCGGAAGACTCTAGCGTGCCTTATACATTTTAATCACACGGAGGAATCCCTTCTCTGATAAATGTCTCATCTAGGTGGCATATTTCTTAAAAGATTTTGTTAAAGGACGGTTGCCCCACTGACAACTGCATTTGCTTAAGACATGGCCAACAAAGCGGATCTACTTTACAATTCAGTCTGTACAGAGTAAGGGTCTGATGTCAACAAGAACATGTATATTGATACATAGGGCATAGATGAGAATTAGAATTAAACTGATACAGTTAATATGAAGATATCATGGTCACTATCCTTTACTCAGACTTTGCTTTAATATTTTGTAACAATAAACTGTCATACACAGAAATGAGATATAATA

Function

NR:

description
LIM/homeobox protein Lhx2-like isoform X2

GO: NA

KEGG:

id description
K09373 LHX2_9; LIM homeobox protein 2/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968132.1 False 2330 mRNA 0.49 6 4474634 4485633
XM_036968131.1 False 2404 mRNA 0.49 6 4474635 4485633
XM_021590449.2 False 1856 mRNA 0.51 5 4475499 4485633
XM_036968130.1 True 1853 mRNA 0.51 5 4475499 4485633

Neighbor

gene id symbol gene type direction distance location
LOC110509300 NA coding upstream 267649 4170102 ~ 4207105 (+)
LOC110509530 LOC106562884 coding upstream 349908 4122406 ~ 4124726 (+)
LOC110509527 NA coding upstream 743105 3705668 ~ 3731529 (+)
LOC118945361 NA coding upstream 919484 3545047 ~ 3555150 (+)
LOC118945281 NA coding upstream 1106208 3322159 ~ 3368426 (+)
LOC110509354 pde4d coding downstream 260717 4746350 ~ 4777161 (+)
LOC110509536 LOC106562892 coding downstream 466983 4952616 ~ 5021603 (+)
LOC110509539 LOC106562896 coding downstream 684229 5169862 ~ 5257753 (+)
LOC118945351 NA coding downstream 772460 5258093 ~ 5260025 (+)
LOC110509541 LOC106562900 coding downstream 855742 5341375 ~ 5479000 (+)
G2143745 NA non-coding upstream 51681 4421606 ~ 4422953 (+)
G2143713 NA non-coding upstream 108880 4365321 ~ 4365754 (+)
G2143695 NA non-coding upstream 146711 4327150 ~ 4327923 (+)
G2143576 NA non-coding upstream 328483 4145940 ~ 4146151 (+)
G2143804 NA non-coding downstream 44000 4529633 ~ 4554280 (+)
G2144071 NA non-coding downstream 80666 4566299 ~ 4566674 (+)
G2144085 NA non-coding downstream 92823 4578456 ~ 4578665 (+)
G2144089 NA non-coding downstream 94088 4579721 ~ 4580029 (+)
G2144110 NA non-coding downstream 109736 4595369 ~ 4595686 (+)
G2142386 LOC106562824 other upstream 1150540 3318949 ~ 3324094 (+)
G2142277 NA other upstream 1391063 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 2533643 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 2896075 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 3044900 1271496 ~ 1429741 (+)
G2144385 NA other downstream 542118 5027751 ~ 5028239 (+)
G2144416 NA other downstream 549556 5035189 ~ 5035913 (+)
G2144756 NA other downstream 798228 5283861 ~ 5284603 (+)
G2144802 NA other downstream 874353 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 1120416 5605462 ~ 5611062 (+)

Expression


Co-expression Network