G2140580


Basic Information

Item Value
gene id G2140580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 1621003 ~ 1635825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2448287
GCTCTGGCTGTATCATGCTAATCCAGACCGAGGCAGATAGAGATGActaaggagagaagggaggagagaaaataacaggaggagagaggatagaagagCACACGGATCATCCTTTGCAGAAAGGAGCAGTGAAACAACATACAAGgCTCGTCTCTGTTCGACAACCTGAGCTAAAAcattcactgacctgaggaccTCACACCGAGGACAACCCTTGCATGAccaaggactgaccaggaccacgTTTTTGGATTGAAAACACTAGTTGGAGCCAGAGTAAACCATACTGCAGATGAACCATATCCTGGattaaggagagagggggacaaatATTGAACACttgctccatccctctccctccctactggCACTAGAGAAAGACTTTACAGAACAGACTAATACCTGATTAAATATTGACATTGTGTTGGGTGCCTGTCCTCATCTGAATTGCActaagagaaagagaagagaaagttaTGGGAGCTCATCCATAACCCTTTGACTCCTCAACTGGCGGTGACCTCAGAGATGCCCTAGGGGCTGGGTTCGATGTGAGGCAGCTGTCTGCTGCGGTCGACGTACAACCAACGTCTGACGTCTCTTTTTTTACTCCCTCTGTTTTCTTCTCTTGTTGTAGCTAcacacctctttctctcctcgGCCTGGGGCGAGGGTTCAAATAGTCCTCCTGTAAATCCATTCTgagggaagacacacacactcgctcactCACTGGAGGTCTGAGTCAGACTGCGCCACTgagagagagttgtgtgtgtcagtgagtctGTCATGTCTGTTTCACTTACTTACCTGTCACATCTGTccacccgtctgtctgtccgtgtgaATAAGTGTGAGTGATATCACATGCGTAACGGTTCGCGGTgtttgtctccctgtctgtctgtgggaaTCAGTGACTTCATGTGACAAAACGTGTGAGTGTGTTTCTATCAGCATTCAACGATACGAGCCAATTTCACTCTGTGTGTATTGCTCTCCATAAACCCACAATGGGCTGTGCAATGTGCTCACAGTTGATTGATGTGTGGAGTCTGTCGGTGAGGAGAACCAGCCGAAGGGCCATGGAACTGACTGCCCTTCCCGAGGCTCTCCAGGGGGGCTACCACAGAGTCACTGGCCTCCACTACATGTCCTCCTTCTCCGATGCAGAGGACTGCTGCGATGACAACAACAGTCACAACAGCACCACCGGCAGCTCCTTCACTATGGACTGGCAAGAGACAGATGACTGACActggggtgacaggtagcctaagcagtgtttcccaactccagtccttgggtacttgtcaactaatcatcaaataaaaatcatattttattagtcacatgcacaagATATAACAGGTGTAGCCCTTACAgtgaatgcttacttacgagcccctaaccaacagtgcagtttcaaaaaagacggataagaataagagatgaaAGCaacaattaaagagcagcagtaaaaaataaaacaacaatcgtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatccaaggactgaccaggaccaacgctgcttagcttcagaagcaagccagcagtggtatgcagggtggtatgctgctggcatgaccccaagcatactgctaaagttatggcgaaatggcttaaggacaacgaagtcaaggtattggagtggccatcacaatgccttgacctcaatcttatagaacatttgtggcgTATGTGAGCATGGAAACCTACCAACCTGACCAagtaacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagattgtggaaggctacccgaaacgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatttaaacttatgacccattgggaatgtgatgaaagaaagaaaagctgaaatatatcattctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactctgattaaatgtcaggaattgtgaaaaactgagtttaaatgttaaGGCTAAGGTgattgtaaacttccgacttcaactggtagagttaattaaagtgactattaatagatgacaacagagagtggtgttggtgtggagagggggggggggggcaatgcgaatagtctgggtagccgtttgacaagatgttcaggagtcttatggcttgtagGTAGAAGCTGGAAAGAAGCCGTTgatgagttgaatgaggtgttcttgtccggggctacaacgaaaatgtgtactgttgggggtactggaagtcAAAAGGTTAGAGAGGCGGTCCAGAACCGGAGGGTCGGCAGTTCAAATACTGAGTTTGACGGGAAATCTGTTCTGGACTAGAGTGAACTGGCAACCTGAGTCTAATTTGTACCAATATCCTATAGATGCCATATCCTGCCCTTGTTTAATGGATGCAAAAAATGCACTGAGTACAACCCAGGGGATACCACGTTAAAAGTATTCCACTTATTTTCAACGTGGTCCCCGATGGAATTCAGACAAAACAACATTAATCCCTATGCATCACATAGCATAGAATaagtaaataaatcaaaataaaagATACAAGAAAATCTAATAAAATACAGTCAATTTATCCTGATCCCATCATTTTGTCTTCCTGGACTCTATACACGTCCTACATCAAAACATTACATCTTTAGTGTGGCTTGTGAAAGTGCCACTTATTTATACACTTCATTATTCTTTACAAGGCTACTCCTCTTACGCCGTTTTAAGATAGAAATTCCAAACTTTAAAAAATGCAAACTGATCGAGAAATATTGTGCTTACATACACTTTCAGAAATCATTTCTACTTTTTAAACGATTGAACTTTTATTAAACTTCATTAAACTTCATACTATTCATATTTCTTCAACATTCTAAACCTCCCATTATTAAAAAAATCCCATTCTGAAGATGTGACTTCCAACATTCTATTCACTGTAAACACTAACTTTTGACGTAAATCAGCTACTTTCCCAACAACTTAGACAAACACATAGAGGGTATGAAATCTTGAtatacttctctgcttctcaaatcTGAAATCAGAACAGAATTATCTTCTATCAATCAAAAACAGCTGTTTTAGTAACTTTTAAAAACAGACATTTCGACCACTTtcccaacaagttagacaaaaactTGGAGTGTATGAAATCttagtctacttctctgcttttcAAATATAATATCAGAACACTTCTCCCACAACCACAAAAATACTTTTAAAGAGCTGAAGCGGGGCATACAATTTTACTTCAATAAAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2448287 True 3371 lncRNA 0.43 2 1621003 1635825

Neighbor

gene id symbol gene type direction distance location
LOC110509295 LOC106562719 coding upstream 2319 1572502 ~ 1618684 (+)
LOC110509512 LOC106562877 coding upstream 62163 1554625 ~ 1558840 (+)
LOC110509509 LOC106562874 coding upstream 88429 1519416 ~ 1532574 (+)
LOC110509506 LOC106562870 coding upstream 191262 1271496 ~ 1429741 (+)
LOC110509503 LOC106562869 coding upstream 776990 835828 ~ 844013 (+)
LOC110509513 LOC106562718 coding downstream 18767 1654592 ~ 1662205 (+)
LOC110509514 LOC106562918 coding downstream 85166 1720991 ~ 1760307 (+)
LOC110509515 LOC106563008 coding downstream 125438 1761263 ~ 1775741 (+)
LOC110509516 LOC106569151 coding downstream 147313 1783138 ~ 1821590 (+)
LOC110509558 cnnm3 coding downstream 190686 1826511 ~ 1852848 (+)
G2140593 NA non-coding upstream 7129 1612314 ~ 1613874 (+)
G2140577 NA non-coding upstream 50242 1570463 ~ 1570761 (+)
G2140575 NA non-coding upstream 52096 1568700 ~ 1568907 (+)
G2140468 NA non-coding upstream 60578 1560137 ~ 1560425 (+)
G2140572 LOC100194725 non-coding upstream 66386 1551059 ~ 1554617 (+)
G2140581 NA non-coding downstream 1479 1637304 ~ 1639268 (+)
G2140605 NA non-coding downstream 4381 1640206 ~ 1640438 (+)
G2140609 NA non-coding downstream 16782 1652607 ~ 1652843 (+)
G2140667 NA non-coding downstream 187021 1822846 ~ 1826321 (+)
G2140692 NA non-coding downstream 228217 1864042 ~ 1864303 (+)
G2139520 LOC106562868 other upstream 767216 852249 ~ 853787 (+)
LOC110509291 LOC106562839 other upstream 1030199 536258 ~ 614583 (+)
G2139202 NA other upstream 1295955 324366 ~ 325048 (+)
LOC110509554 LOC105007341 other downstream 302559 1935597 ~ 1941376 (+)
G2142277 NA other downstream 1447392 3083217 ~ 3083571 (+)
G2142386 LOC106562824 other downstream 1683124 3318949 ~ 3324094 (+)
G2144385 NA other downstream 3391926 5027751 ~ 5028239 (+)
G2144416 NA other downstream 3399364 5035189 ~ 5035913 (+)

Expression


Co-expression Network