G2142533


Basic Information

Item Value
gene id G2142533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 3541182 ~ 3541398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2450454
aacagctgatgctcacatgcatgtttcagtgttacttgcctcaaagcatCGAAGTAATtgagctcgtctggtaggctcgtgtcactgggtagatcgcagctgtgcttccctttgtagtctattatagtttgcaagccctgccacatctgacgagcgtcggagccggtgtagtatgattcgatcttagtcctgtattgacattttgcctgtttggtGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2450454 True 217 lncRNA 0.48 1 3541182 3541398

Neighbor

gene id symbol gene type direction distance location
LOC118945281 NA coding upstream 172756 3322159 ~ 3368426 (+)
LOC110509524 LOC106562843 coding upstream 230008 3292190 ~ 3311174 (+)
LOC118945358 LOC106570398 coding upstream 253583 3274408 ~ 3287599 (+)
LOC110509523 ppp6c coding upstream 280115 3236810 ~ 3261067 (+)
LOC110509522 gstt2b coding upstream 370546 3165311 ~ 3170636 (+)
LOC118945361 NA coding downstream 3649 3545047 ~ 3555150 (+)
LOC110509527 NA coding downstream 164348 3705668 ~ 3731529 (+)
LOC110509530 LOC106562884 coding downstream 581008 4122406 ~ 4124726 (+)
LOC110509300 NA coding downstream 628704 4170102 ~ 4207105 (+)
LOC110509532 LOC106562866 coding downstream 933236 4474634 ~ 4485633 (+)
G2142441 NA non-coding upstream 139493 3399722 ~ 3401689 (+)
G2142440 NA non-coding upstream 140004 3399090 ~ 3401178 (+)
G2142386 LOC106562824 non-coding upstream 217088 3318949 ~ 3324094 (+)
G2142365 NA non-coding upstream 286551 3252586 ~ 3254631 (+)
G2142235 NA non-coding upstream 445770 3093789 ~ 3095412 (+)
G2142543 NA non-coding downstream 18756 3560154 ~ 3560397 (+)
G2142546 NA non-coding downstream 22498 3563896 ~ 3564120 (+)
G2142548 NA non-coding downstream 25210 3566608 ~ 3566822 (+)
G2142555 NA non-coding downstream 31146 3572544 ~ 3572791 (+)
G2142572 NA non-coding downstream 55974 3597372 ~ 3597630 (+)
G2142277 NA other upstream 457611 3083217 ~ 3083571 (+)
LOC110509554 LOC105007341 other upstream 1600191 1935597 ~ 1941376 (+)
LOC110509295 LOC106562719 other upstream 1962623 1572502 ~ 1618684 (+)
LOC110509506 LOC106562870 other upstream 2111448 1271496 ~ 1429741 (+)
G2144385 NA other downstream 1486353 5027751 ~ 5028239 (+)
G2144416 NA other downstream 1493791 5035189 ~ 5035913 (+)
G2144756 NA other downstream 1742463 5283861 ~ 5284603 (+)
G2144802 NA other downstream 1818588 5359986 ~ 5375497 (+)
LOC110509544 LOC106562892 other downstream 2064651 5605462 ~ 5611062 (+)

Expression


Co-expression Network