oma1 (oma1)


Basic Information

Item Value
gene id oma1
gene name oma1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26477035 ~ 26501552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969107.1
GAGACAGTCATTCTCGGAACATTGTCTTAGAGCATGCAGTTGCAGGGGGGACTATTATTTTAGACGCACAAGACAGTTCCTATGTGTTTGAGTTGCAGAGGACCGTCAAAGTAGATGAATAAAGGCTGTCACCTGGGCGTTTCAGGAAGTGGTATCTTCTCATTCGGGAACCATGGAGTTGTTGTGTGCCCGTCTCATGAGGAACCAACGCCGTTGCCTACCTGCCTACCTGTCTAGAAGCTTTCAAACCTCCCATTGCCGACAGAGACAATCAACAACCAGGAGGACATTACCTTCAACAGAACTCTACTCAACCAACACATGTCGGATTCTACGGCAGCCCGAAACCACAGACTCTGTTTGTCAACTTCAATTGAAGCCATCTTCATCTCAGAGACAACTTTTCTCATCTCAGAATGTAAGAACAGTACTTTTCCCAGTGGGGACACCTAGACCTGACCCTGCTGTCCACTGTCTCCCTGTTATATGGCTGTCTAAGCATGGACAGAACTTCTTCCATACCTCTGCTCCTCACCGCGCCCTGCCTGCGCCTCTCATATGGCTGGTACTCAAACCCCTGCAGAAGATAGTGGCTATTATACTGGGCAGgAGTATCAGGAAGTGGTGGTTGGCCCTCCCACCCAATAAGCAGCAGCTTGTGCGTCAGAAGGTCTGGCGTCGCCGTTGGCAGCTGGTGGCCGGGGGTATGGTTGCTATGGTGATCATGGCAAGTTTCTTCCTGACTCATCTGGACGAATCGCCCATCACGGGACGCACACGCCTCCTAGTGTTCAGTAGAGAGAACTACATGGAGCTGGCTGCAGTGACAGGAGATGGGTACATGGAGGAATTTGCTGAGTTGATGGTTTCAGAGAAGGACCCTCGTCACCAGGTGGTGGAGAGAGTGGTGGAGCACCTGGCCCAGAGGAACAAAGACATCCCAGAGGTCTCCTCTGTTCCATGGAGAGTCCACTTGGTCGACAGCCCTACCATCAACGCTTTCGTACTGCCTaatGGAAAGGTGTTTATGTTCACTGGGATGTTGGAGGCTGTTGCAGATGTTCACCAGCTCACCTTTATCCTGGGACATGAGATGGCCCACGCAGTGATGGGACACTCTgcaGAGCAGGCCAGTATGTCTCATGTGGTGGACTTCCTGTCTCTGATCCTGCTAACAGCCATCTGGGCCGTGTGTCCTCGAGACAGCCTGGCTGTACTGGGACAGTGGATACAGACTAAGCTCATACAGttctTGTTTGATCGTCCTTATAGCAGGAAGTTGGAGGCAGAAGCTGATCAGGTTGGACTCCAGCTGGCTGCCAAGgcATGTGCTGATGTGCGGGCAGGGCCAGTGTTCTGGCAGCAGATGGAAATCAGTGACCAGCTGAGAGGAGAACCTACAGTACCAGAGTGGCTCTCCACACACCCCTCTCACAGGAACAGAGTTACACAGCTGGACCGGCTGATCCCACAGtaCCTGGAGTTGAGGGAGAGCTGTTCCTGTCCTGCCCTCCCTGCTACAGACCCCAGAGCTGTCTTCGCTCAGAGTGTCAAAGTGCTGCTGGATGCTACTAGGGACCTGGAGGGAGAGGCGGGGAAGAGACTGAAACCACAAGCTCTGTCCCAGACCCCAACGTCAGACCACAGAAGGGCTCCACACACAGGGGGACTGGCTACTGCCCTGCTAGCCTCCTCAGCCACAGGCTCacctccagccctgaccctagaCACTGCTACCCACCTCTAACCCCCGGGCCACTACCCCCGCCCCCTGTCttcccagccccaaccccaggcCTAGTTCCAGTCAGTGATTGTAGCTCCTTGATTGCTAATTGACTGTTGTTTGTAAGGTCTTGTAAAATTGCAGTTGTCACCTGCTTCTGTGGAATTGCTGCAAAAAGGTTTCGAGTAGCGGTTCTGTTTACTGCGTGTAAGAGGGTACAGGGAGATGCTTTGAATGTGTAGTGTGAATACATAGAGATAGTATCCTGTTTTCATTGGAAGATTTCAAGTGGGGACATGCTGCACTCAATGGCCTAATGAGCATATAGAGTGAGGTCCAAAATGATTGACTCCCCTGATAAAGATGAGCagtaatgactgtataaaataaataaattcaaaaTTAAAATCAAAATGATTGACATCCCGGCCCTAAAGATTGACACCTCTAAAGTAAAGTAATCAAACGtgtgtatttggtcccatattcctatcacgcaatgactacatcaagcttgtgactctacaaacttgttggatgcatttgcagtttgtttttggTTGGGTTTAAGATGATTTAGAATATATTTCTCGACACTTCTACATTGATGTACattctaccatgattacggataatcctgaatgaattgtgaaaaatgatgagtgagaaagttagagggtcaaagatcataccccccaacacatgctaacctctcaccattaacaATAACAGAAGAGATTTAACAAATGATTGTTCAAACTATGGCTACTTGTCTTAGTGCATATGCAGATCTATACACACCTCACCGAAACTGACAACCAATAATTTAACAGGATTTCCGAAATCACGTTTGTAGGGAATATAAAAGTCCGAACATCTCAACTTTACAGTATATAAAAGAGTAAAAGACTAGATTGAGTTCCTCTCTTTCCAAAGACCACAACCTGGAAGTCAGTGATAAGTTGTTTGTCCCATCTCAGTGGTGTTGGTATAATACATGCTCATGTGATTACAAAGAATTGCCATATAATGTGTTTCTACATGGATTGTTGTACAGCCAAATTCCTCAACAGTAAGATAACGCGTGAAATTAACCTCCTTGATTGATCAAAACTGGGAACATATAAATAACGTTCTAACAACATTGAGGATATGTTGAGGAAACCATGTAAGAAtgtccttcagaaagtactcataccTCTGGACTTATTCACATTTTGGTTTTCTGGGTAGACCGTGTGTAGGCACTGTGTCCTGTATGTCACCTACTTTATCTACACTGTCGTGTCCATCCATCACCACCTGTTGCAATGTGTTTTTGTGGTAATGTGGCCATCAAGTTCATTTAAATGAGTTTTATGTCTCGCCCTGAAGGAATGGTATTGTGTTGTATTTTAGTGTCAAAGATCTTTGTGAAATCAtagaaatgtgtagttttgtacAAATCATGTATTGAACTAGCCAAAGAACATATTTTATATACTAGAATGTACATCTTAGAACCTGACAACCTGAAAATGAATGGGTTTTGAGGTAGAA
>XM_036969109.1
CTATTATTTTAGACGCACAAGACAGTTCCTATGTGTTTGAGTTGCAGAGGACCGTCAAAGTAGATGAATAAAGGAAGTGGTATCTTCTCATTCGGGAACCATGGAGTTGTTGTGTGCCCGTCTCATGAGGAACCAACGCCGTTGCCTACCTGCCTACCTGTCTAGAAGCTTTCAAACCTCCCATTGCCGACAGAGACAATCAACAACCAGGAGGACATTACCTTCAACAGAACTCTACTCAACCAACACATGTCGGATTCTACGGCAGCCCGAAACCACAGACTCTGTTTGTCAACTTCAATTGAAGCCATCTTCATCTCAGAGACAACTTTTCTCATCTCAGAATGTAAGAACAGTACTTTTCCCAGTGGGGACACCTAGACCTGACCCTGCTGTCCACTGTCTCCCTGTTATATGGCTGTCTAAGCATGGACAGAACTTCTTCCATACCTCTGCTCCTCACCGCGCCCTGCCTGCGCCTCTCATATGGCTGGTACTCAAACCCCTGCAGAAGATAGTGGCTATTATACTGGGCAGgAGTATCAGGAAGTGGTGGTTGGCCCTCCCACCCAATAAGCAGCAGCTTGTGCGTCAGAAGGTCTGGCGTCGCCGTTGGCAGCTGGTGGCCGGGGGTATGGTTGCTATGGTGATCATGGCAAGTTTCTTCCTGACTCATCTGGACGAATCGCCCATCACGGGACGCACACGCCTCCTAGTGTTCAGTAGAGAGAACTACATGGAGCTGGCTGCAGTGACAGGAGATGGGTACATGGAGGAATTTGCTGAGTTGATGGTTTCAGAGAAGGACCCTCGTCACCAGGTGGTGGAGAGAGTGGTGGAGCACCTGGCCCAGAGGAACAAAGACATCCCAGAGGTCTCCTCTGTTCCATGGAGAGTCCACTTGGTCGACAGCCCTACCATCAACGCTTTCGTACTGCCTaatGGAAAGGTGTTTATGTTCACTGGGATGTTGGAGGCTGTTGCAGATGTTCACCAGCTCACCTTTATCCTGGGACATGAGATGGCCCACGCAGTGATGGGACACTCTgcaGAGCAGGCCAGTATGTCTCATGTGGTGGACTTCCTGTCTCTGATCCTGCTAACAGCCATCTGGGCCGTGTGTCCTCGAGACAGCCTGGCTGTACTGGGACAGTGGATACAGACTAAGCTCATACAGttctTGTTTGATCGTCCTTATAGCAGGAAGTTGGAGGCAGAAGCTGATCAGGTTGGACTCCAGCTGGCTGCCAAGgcATGTGCTGATGTGCGGGCAGGGCCAGTGTTCTGGCAGCAGATGGAAATCAGTGACCAGCTGAGAGGAGAACCTACAGTACCAGAGTGGCTCTCCACACACCCCTCTCACAGGAACAGAGTTACACAGCTGGACCGGCTGATCCCACAGtaCCTGGAGTTGAGGGAGAGCTGTTCCTGTCCTGCCCTCCCTGCTACAGACCCCAGAGCTGTCTTCGCTCAGAGTGTCAAAGTGCTGCTGGATGCTACTAGGGACCTGGAGGGAGAGGCGGGGAAGAGACTGAAACCACAAGCTCTGTCCCAGACCCCAACGTCAGACCACAGAAGGGCTCCACACACAGGGGGACTGGCTACTGCCCTGCTAGCCTCCTCAGCCACAGGCTCacctccagccctgaccctagaCACTGCTACCCACCTCTAACCCCCGGGCCACTACCCCCGCCCCCTGTCttcccagccccaaccccaggcCTAGTTCCAGTCAGTGATTGTAGCTCCTTGATTGCTAATTGACTGTTGTTTGTAAGGTCTTGTAAAATTGCAGTTGTCACCTGCTTCTGTGGAATTGCTGCAAAAAGGTTTCGAGTAGCGGTTCTGTTTACTGCGTGTAAGAGGGTACAGGGAGATGCTTTGAATGTGTAGTGTGAATACATAGAGATAGTATCCTGTTTTCATTGGAAGATTTCAAGTGGGGACATGCTGCACTCAATGGCCTAATGAGCATATAGAGTGAGGTCCAAAATGATTGACTCCCCTGATAAAGATGAGCagtaatgactgtataaaataaataaattcaaaaTTAAAATCAAAATGATTGACATCCCGGCCCTAAAGATTGACACCTCTAAAGTAAAGTAATCAAACGtgtgtatttggtcccatattcctatcacgcaatgactacatcaagcttgtgactctacaaacttgttggatgcatttgcagtttgtttttggTTGGGTTTAAGATGATTTAGAATATATTTCTCGACACTTCTACATTGATGTACattctaccatgattacggataatcctgaatgaattgtgaaaaatgatgagtgagaaagttagagggtcaaagatcataccccccaacacatgctaacctctcaccattaacaATAACAGAAGAGATTTAACAAATGATTGTTCAAACTATGGCTACTTGTCTTAGTGCATATGCAGATCTATACACACCTCACCGAAACTGACAACCAATAATTTAACAGGATTTCCGAAATCACGTTTGTAGGGAATATAAAAGTCCGAACATCTCAACTTTACAGTATATAAAAGAGTAAAAGACTAGATTGAGTTCCTCTCTTTCCAAAGACCACAACCTGGAAGTCAGTGATAAGTTGTTTGTCCCATCTCAGTGGTGTTGGTATAATACATGCTCATGTGATTACAAAGAATTGCCATATAATGTGTTTCTACATGGATTGTTGTACAGCCAAATTCCTCAACAGTAAGATAACGCGTGAAATTAACCTCCTTGATTGATCAAAACTGGGAACATATAAATAACGTTCTAACAACATTGAGGATATGTTGAGGAAACCATGTAAGAAtgtccttcagaaagtactcataccTCTGGACTTATTCACATTTTGGTTTTCTGGGTAGACCGTGTGTAGGCACTGTGTCCTGTATGTCACCTACTTTATCTACACTGTCGTGTCCATCCATCACCACCTGTTGCAATGTGTTTTTGTGGTAATGTGGCCATCAAGTTCATTTAAATGAGTTTTATGTCTCGCCCTGAAGGAATGGTATTGTGTTGTATTTTAGTGTCAAAGATCTTTGTGAAATCAtagaaatgtgtagttttgtacAAATCATGTATTGAACTAGCCAAAGAACATATTTTATATACTAGAATGTACATCTTAGAACCTGACAACCTGAAAATGAATGGGTTTTGAGGTAGAA
>XM_036969108.1
CACAAGACAGTTCCTATGTGTTTGAGTTGCAGAGGACCGTCAAAGTAGATGAATAAAGTCAAGGACTGTTCTTCCATAGGCTGTCACCTGGGCGTTTCAGGAAGTGGTATCTTCTCATTCGGGAACCATGGAGTTGTTGTGTGCCCGTCTCATGAGGAACCAACGCCGTTGCCTACCTGCCTACCTGTCTAGAAGCTTTCAAACCTCCCATTGCCGACAGAGACAATCAACAACCAGGAGGACATTACCTTCAACAGAACTCTACTCAACCAACACATGTCGGATTCTACGGCAGCCCGAAACCACAGACTCTGTTTGTCAACTTCAATTGAAGCCATCTTCATCTCAGAGACAACTTTTCTCATCTCAGAATGTAAGAACAGTACTTTTCCCAGTGGGGACACCTAGACCTGACCCTGCTGTCCACTGTCTCCCTGTTATATGGCTGTCTAAGCATGGACAGAACTTCTTCCATACCTCTGCTCCTCACCGCGCCCTGCCTGCGCCTCTCATATGGCTGGTACTCAAACCCCTGCAGAAGATAGTGGCTATTATACTGGGCAGgAGTATCAGGAAGTGGTGGTTGGCCCTCCCACCCAATAAGCAGCAGCTTGTGCGTCAGAAGGTCTGGCGTCGCCGTTGGCAGCTGGTGGCCGGGGGTATGGTTGCTATGGTGATCATGGCAAGTTTCTTCCTGACTCATCTGGACGAATCGCCCATCACGGGACGCACACGCCTCCTAGTGTTCAGTAGAGAGAACTACATGGAGCTGGCTGCAGTGACAGGAGATGGGTACATGGAGGAATTTGCTGAGTTGATGGTTTCAGAGAAGGACCCTCGTCACCAGGTGGTGGAGAGAGTGGTGGAGCACCTGGCCCAGAGGAACAAAGACATCCCAGAGGTCTCCTCTGTTCCATGGAGAGTCCACTTGGTCGACAGCCCTACCATCAACGCTTTCGTACTGCCTaatGGAAAGGTGTTTATGTTCACTGGGATGTTGGAGGCTGTTGCAGATGTTCACCAGCTCACCTTTATCCTGGGACATGAGATGGCCCACGCAGTGATGGGACACTCTgcaGAGCAGGCCAGTATGTCTCATGTGGTGGACTTCCTGTCTCTGATCCTGCTAACAGCCATCTGGGCCGTGTGTCCTCGAGACAGCCTGGCTGTACTGGGACAGTGGATACAGACTAAGCTCATACAGttctTGTTTGATCGTCCTTATAGCAGGAAGTTGGAGGCAGAAGCTGATCAGGTTGGACTCCAGCTGGCTGCCAAGgcATGTGCTGATGTGCGGGCAGGGCCAGTGTTCTGGCAGCAGATGGAAATCAGTGACCAGCTGAGAGGAGAACCTACAGTACCAGAGTGGCTCTCCACACACCCCTCTCACAGGAACAGAGTTACACAGCTGGACCGGCTGATCCCACAGtaCCTGGAGTTGAGGGAGAGCTGTTCCTGTCCTGCCCTCCCTGCTACAGACCCCAGAGCTGTCTTCGCTCAGAGTGTCAAAGTGCTGCTGGATGCTACTAGGGACCTGGAGGGAGAGGCGGGGAAGAGACTGAAACCACAAGCTCTGTCCCAGACCCCAACGTCAGACCACAGAAGGGCTCCACACACAGGGGGACTGGCTACTGCCCTGCTAGCCTCCTCAGCCACAGGCTCacctccagccctgaccctagaCACTGCTACCCACCTCTAACCCCCGGGCCACTACCCCCGCCCCCTGTCttcccagccccaaccccaggcCTAGTTCCAGTCAGTGATTGTAGCTCCTTGATTGCTAATTGACTGTTGTTTGTAAGGTCTTGTAAAATTGCAGTTGTCACCTGCTTCTGTGGAATTGCTGCAAAAAGGTTTCGAGTAGCGGTTCTGTTTACTGCGTGTAAGAGGGTACAGGGAGATGCTTTGAATGTGTAGTGTGAATACATAGAGATAGTATCCTGTTTTCATTGGAAGATTTCAAGTGGGGACATGCTGCACTCAATGGCCTAATGAGCATATAGAGTGAGGTCCAAAATGATTGACTCCCCTGATAAAGATGAGCagtaatgactgtataaaataaataaattcaaaaTTAAAATCAAAATGATTGACATCCCGGCCCTAAAGATTGACACCTCTAAAGTAAAGTAATCAAACGtgtgtatttggtcccatattcctatcacgcaatgactacatcaagcttgtgactctacaaacttgttggatgcatttgcagtttgtttttggTTGGGTTTAAGATGATTTAGAATATATTTCTCGACACTTCTACATTGATGTACattctaccatgattacggataatcctgaatgaattgtgaaaaatgatgagtgagaaagttagagggtcaaagatcataccccccaacacatgctaacctctcaccattaacaATAACAGAAGAGATTTAACAAATGATTGTTCAAACTATGGCTACTTGTCTTAGTGCATATGCAGATCTATACACACCTCACCGAAACTGACAACCAATAATTTAACAGGATTTCCGAAATCACGTTTGTAGGGAATATAAAAGTCCGAACATCTCAACTTTACAGTATATAAAAGAGTAAAAGACTAGATTGAGTTCCTCTCTTTCCAAAGACCACAACCTGGAAGTCAGTGATAAGTTGTTTGTCCCATCTCAGTGGTGTTGGTATAATACATGCTCATGTGATTACAAAGAATTGCCATATAATGTGTTTCTACATGGATTGTTGTACAGCCAAATTCCTCAACAGTAAGATAACGCGTGAAATTAACCTCCTTGATTGATCAAAACTGGGAACATATAAATAACGTTCTAACAACATTGAGGATATGTTGAGGAAACCATGTAAGAAtgtccttcagaaagtactcataccTCTGGACTTATTCACATTTTGGTTTTCTGGGTAGACCGTGTGTAGGCACTGTGTCCTGTATGTCACCTACTTTATCTACACTGTCGTGTCCATCCATCACCACCTGTTGCAATGTGTTTTTGTGGTAATGTGGCCATCAAGTTCATTTAAATGAGTTTTATGTCTCGCCCTGAAGGAATGGTATTGTGTTGTATTTTAGTGTCAAAGATCTTTGTGAAATCAtagaaatgtgtagttttgtacAAATCATGTATTGAACTAGCCAAAGAACATATTTTATATACTAGAATGTACATCTTAGAACCTGACAACCTGAAAATGAATGGGTTTTGAGGTAGAA

Function

symbol description
oma1 Predicted to enable metalloendopeptidase activity. Involved in mitochondrial respiratory chain complex assembly. Predicted to be located in mitochondrial inner membrane. Orthologous to human OMA1 (OMA1 zinc metallopeptidase).

NR:

description
metalloendopeptidase OMA1, mitochondrial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K23010 OMA1; metalloendopeptidase OMA1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969107.1 False 3265 mRNA 0.46 9 26477035 26501552
XM_036969109.1 False 3193 mRNA 0.46 9 26477086 26501552
XM_036969108.1 True 3220 mRNA 0.46 9 26477101 26501552

Neighbor

gene id symbol gene type direction distance location
LOC110521629 LOC106584269 coding upstream 19316 26446447 ~ 26457719 (+)
LOC110522769 LOC106613976 coding upstream 118544 26315974 ~ 26358491 (+)
LOC110521625 mettl13 coding upstream 162318 26312180 ~ 26314731 (+)
LOC110521624 myoc coding upstream 172315 26292253 ~ 26304720 (+)
LOC110521633 LOC106584207 coding downstream 194257 26695809 ~ 26795605 (+)
LOC110521632 LOC106584206 coding downstream 294650 26796202 ~ 26822332 (+)
plpp3 plpp3 coding downstream 345871 26847423 ~ 26906418 (+)
usp24 usp24 coding downstream 522386 27023938 ~ 27076744 (+)
dhcr24 dhcr24 coding downstream 598265 27099817 ~ 27122682 (+)
G2217304 NA non-coding upstream 78421 26373801 ~ 26398614 (+)
G2217315 NA non-coding upstream 85875 26390909 ~ 26391160 (+)
G2217277 NA non-coding upstream 152265 26318141 ~ 26324770 (+)
G2217047 NA non-coding upstream 559335 25916976 ~ 25917700 (+)
G2217476 NA non-coding downstream 169951 26671503 ~ 26671724 (+)
G2217502 NA non-coding downstream 227982 26729534 ~ 26729883 (+)
G2217392 NA non-coding downstream 247989 26749541 ~ 26757367 (+)
G2217517 NA non-coding downstream 267843 26769395 ~ 26770266 (+)
G2217159 LOC106584278 other upstream 343991 26127054 ~ 26133044 (+)
LOC110521611 LOC106584283 other upstream 664729 25688091 ~ 25825503 (+)
LOC110522768 LOC106584287 other upstream 888520 25566527 ~ 25590680 (+)
G2216357 NA other upstream 1103425 25364252 ~ 25373610 (+)
G2216024 LOC106584303 other upstream 1363437 25030998 ~ 25174051 (+)
G2217442 NA other downstream 105971 26607523 ~ 26607943 (+)
G2218483 NA other downstream 723822 27225374 ~ 27226305 (+)
LOC110521646 LOC106584219 other downstream 996325 27497328 ~ 27519290 (+)
LOC110521656 LOC106584103 other downstream 1336356 27823914 ~ 27844041 (+)

Expression


Co-expression Network