spata18 (spata18)


Basic Information

Item Value
gene id spata18
gene name spata18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27990515 ~ 27997891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599395.2
CCTACTTCACTTGTGCGCCTACATCATAAAGGAAGAACCGGCAGAAGACGCTTACGGTCTATACATTTCTCACAAGAATAACCAGACTATTACTGAAAACAATGCAAGTGGCTTTAGCAAACATTCTCAATCTGTATATGAGTCAAATGAGTAAAAAGCGTTGCCACAACTGAGATGGTACTTGGCACCCGTTGTAACGAAGGTGGACAAAACGGCAAGGGCAAGAATTTCTAAGGCGGGTATAAAAAGGGAGCGCGCGCCTGTCACGGGCGCTCTCGCCCCAGATTAAGTCCCACGGTTGTCCAAAGCGTTTTGAACCTTTCAAGATTAGGGAGGGAGCAGACATGGCCGACTCGCTAAGGAGGCTGGTGAACACATCTTCCTTCAGCGTTCTACAGGACAAACTTGAGTCCTGGTACAAGGACTACCATGTCATCTCCTGTGATCAGAATCTGAACAGGTGCTGTGAATTGGTAGAGCTCACCTCCAAGATACAGGGTCAGCTCTTCACCATCCTCAACTTCACTGCTAGAGAGGGTGGTCACTATGCAGGAGTGGATGTGCTCAAATCACGCCTGCTGCCTTGGTTGGGGACTTGTTTCTCCATGGCAACCTCCTCTGTCACCAACGACACCAGCCTCAACCTCATccagGAgtccgtggagaaggagaggaagatcaGAGAGCTGTCTGCCTCCCATGAGAACGACATGCAGAAGATGGAGACTCAGCTGTGCTCCACTCACCTACAGCTGGACTCTGTCAAACAGGAACTGGCGGATGCTCATCTGCAGCTGGACAACACAAAAAATATGTCAGCCACAACTCTGCTGGCCACCGAGGATGAGATACTACAGCTGAAAGCAGAgTTGCGTGCGGCCCGTGACCAGGTGGAGACCTATAAGAGGAAGGTGGATGTTCTGGATGACTATGAGAGACAGGTGCGTCTGCTGAGGGATGAGGTGTCTTTCCTCACAGCAGAGAAGAGCATGCTGCAGGAGAGGTTGGTGAGGAGTTGTTCCCCCAGCCCCCTGCCCAGACAGAGCCGCCCCTCCAGCCCTCTGAAGAGTGAGTCTCCCACCCGGGCCCAGCTCACCAATTCGTCCCGCCACGCCAGGCTGGTGTCCCGCTTCAGTGACTTGTATGCTGTGGAGCGCCTGGAGGCCCAGAGTCTGCTCCGACGCTACATAGATGACCTGGAGATGGTCCAGAGAATCATCTTCATTGCCACTGTGgaggcCTTCCAGGCAGCCAAGCTGGCCTACCGTCAATTCAAGCTGCGAGTAAAGAAGACCCTGTCACCCTCCCACCTGGGGCCGGAGACCCTGGAGGACTCGGTGGTGGACTATATCGTCAGGAACTTGGACCTCTACGACGTGCAGGCCAGTGTTAATGACGTGATCAACGCCATGAATGTAAACCCACGGATCTCCTTCCCCCCGGAGGTGGACTTTGTCCTGATCAACAGCTTCATCCGGGAGACATGCAGAGTGGCCTTCGCCATGCAGACACTGGACTCTCCTCTGGACCTGGCTTTCACCAGCGGTGGAGAACTCTACAGCGACAACAAGTATCGTCGTAGCTATGACTCTGAGTTTACTGCTCCTCTGGTGGCGTACCATGTGTGGCCAGCACTGGTGGAGGGGGACAGTGTCATAGTGAAGGGAGAGGCAGTCACCAGGAGAGGAGCTCTGTGGAGGAGCAGAAGCAGGAGCTGCAGTCCTGTTCGCTCTGGCAGCCCCACACGCACTCTCggGTTTAGTCGCAGCAGAAGCCCCTCTCCCGGACGTCTCTCCGCCAGTCGCCTGTAAACCCTAACTGACCACTGagttacaaaaggaaaaccaaaTTCTACACATCGATTTCATGTTTGCAACAAAGACAGATCTTTAGCTTTAATGGACTGGATCCTGTCGTTATTTGTCAGTTGTGATGACTTGATGTTAAGTAGTTAGACTCCGTGTCAATATGGACATTGGTCCAGGGTTTACAGTATTCTGGAGAGAAGTTCCATGTTACCATTACAGTATCCAGAGACTCTGGCAGCTGGTCCGTTCAGAACAATCCTTTCAGGGTGCTGTAGCAGCACGTGACAAGGCTATGTGTGTGTTTAATCTATGCCCATTATCTTAGTGATTCTTAACTGTGTACTATGCAAAACCAGGATGATTGTGTGGTTGACCATAATGTAACTTTTTAAGGACATTTAGACCTGCACAGTATCATTTTCTGAGACTGTTGTAGTTTAGGTTTTATCTTTAACCTCAaaccttgatagactctgggttATAATGAATACATTTTAATGTCATTTTAATGTAAGTCTTAGCCTGCTTTTTtgttagatttttttgttgttgtaagacACATGGTGCTAAAGTTCAGTCAGAACTGTTCAACTCCACAAAAAACACGAGAGATTGGTATTGCTGAGAATAATGATTAAGCGTACAGTTTATAAAGTAATCCGTTCCAGtccatgtttctttttttttggtgTTGTGATATTAGCTAGATGTGTGGTTTGGATGGATTTGTAACAATAGAAGGGATTTAAAGTTATGCAAAACATATTCTGTAACTTCAAATGGTTGACTTGAGAAAAGATGCCTTTTTTTGTTAGTCCTAATGAAGTTGCTTATTATCTACTGTACGCACAAGATCCAAAAGCAACATATACCATATTTAGGATAATTGTTAGGCTCCACATTTCATTGATTACAGCCTAACTATTTTTCACTATTTGAAATCATTATACAGTCTAATCTTTCATTTTGCATTaaacagtgtgttagtgttgtgtATGCAAAACCTGGTGATAAACCCCAAAAACTTGgactcaaatatatatataatgtagttGTGCTGTTCTTGTTAcagaatacaaaaaaataaattatatacAGAGCGA

Function

symbol description
spata18 Acts upstream of or within response to steroid hormone. Predicted to be located in cytoplasm. Predicted to be active in mitochondrial outer membrane. Is expressed in floor plate; ovary; peripheral olfactory organ; pronephric duct; and spinal cord. Orthologous to human SPATA18 (spermatogenesis associated 18).

NR:

description
mitochondria-eating protein

GO: NA

KEGG:

id description
K22257 SPATA18; mitochondria-eating protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599395.2 True 2911 mRNA 0.47 12 27990515 27997891

Neighbor

gene id symbol gene type direction distance location
LOC110521659 LOC106584107 coding upstream 19172 27962907 ~ 27971343 (+)
LOC100136720 zar1 coding upstream 133585 27855364 ~ 27856930 (+)
LOC110521658 LOC106584105 coding upstream 135928 27851805 ~ 27855190 (+)
LOC110521656 LOC106584103 coding upstream 146474 27823914 ~ 27844041 (+)
LOC110522775 NA coding upstream 167647 27801294 ~ 27822868 (+)
LOC110521663 rasl11b coding downstream 95476 28093367 ~ 28096082 (+)
fip1l1a fip1l1 coding downstream 262939 28260830 ~ 28307538 (+)
gsx2 gsx2 coding downstream 534064 28531955 ~ 28533455 (+)
pdgfra pdgfra coding downstream 557492 28555383 ~ 28576642 (+)
LOC110521672 kit coding downstream 630025 28627916 ~ 28667914 (+)
G2219075 NA non-coding upstream 4176 27983631 ~ 27986339 (+)
G2219070 NA non-coding upstream 41790 27948513 ~ 27948725 (+)
G2218968 NA non-coding upstream 131536 27857137 ~ 27858979 (+)
G2219026 NA non-coding upstream 139550 27850636 ~ 27850965 (+)
G2219228 NA non-coding downstream 236042 28233933 ~ 28247795 (+)
G2219302 lnx1 non-coding downstream 338048 28335939 ~ 28337968 (+)
G2219327 NA non-coding downstream 372756 28370647 ~ 28371013 (+)
G2219964 NA non-coding downstream 517078 28514969 ~ 28539699 (+)
G2219983 NA non-coding downstream 543274 28541165 ~ 28541401 (+)
LOC110521646 LOC106584219 other upstream 487835 27497328 ~ 27519290 (+)
G2218483 NA other upstream 764210 27225374 ~ 27226305 (+)
LOC110521633 LOC106584207 other upstream 1238051 26695809 ~ 26795605 (+)
G2217442 NA other upstream 1382572 26607523 ~ 26607943 (+)
G2219989 LOC105940532 other downstream 549647 28547538 ~ 28548084 (+)
G2219991 NA other downstream 551138 28549029 ~ 28549478 (+)
G2220253 NA other downstream 1023695 29021586 ~ 29021882 (+)
LOC110521703 LOC106584150 other downstream 2865933 30863624 ~ 30866524 (+)

Expression


Co-expression Network