Gene
RNA
| Item | Value |
|---|---|
| gene id | G2219302 |
| gene name | lnx1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050570.1 |
| NCBI id | CM025857.1 |
| chromosome length | 46327593 |
| location | 28335939 ~ 28337968 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lnx1 | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in central nervous system. Orthologous to human LNX1 (ligand of numb-protein X 1). |
| description |
|---|
| E3 ubiquitin-protein ligase LNX |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2538400 | True | 399 | lncRNA | 0.61 | 2 | 28335939 | 28337968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fip1l1a | fip1l1 | coding | upstream | 28401 | 28260830 ~ 28307538 (+) |
| LOC110521663 | rasl11b | coding | upstream | 239857 | 28093367 ~ 28096082 (+) |
| spata18 | spata18 | coding | upstream | 338048 | 27990515 ~ 27997891 (+) |
| LOC110521659 | LOC106584107 | coding | upstream | 364596 | 27962907 ~ 27971343 (+) |
| LOC100136720 | zar1 | coding | upstream | 479009 | 27855364 ~ 27856930 (+) |
| gsx2 | gsx2 | coding | downstream | 193987 | 28531955 ~ 28533455 (+) |
| pdgfra | pdgfra | coding | downstream | 217415 | 28555383 ~ 28576642 (+) |
| LOC110521672 | kit | coding | downstream | 289948 | 28627916 ~ 28667914 (+) |
| srd5a3 | srd5a3 | coding | downstream | 427395 | 28765363 ~ 28768625 (+) |
| tmem165 | LOC106584122 | coding | downstream | 431264 | 28769232 ~ 28774166 (+) |
| G2219228 | NA | non-coding | upstream | 88144 | 28233933 ~ 28247795 (+) |
| G2219075 | NA | non-coding | upstream | 349600 | 27983631 ~ 27986339 (+) |
| G2219070 | NA | non-coding | upstream | 387214 | 27948513 ~ 27948725 (+) |
| G2218968 | NA | non-coding | upstream | 476960 | 27857137 ~ 27858979 (+) |
| LOC110521658 | LOC106584105 | non-coding | upstream | 480749 | 27851805 ~ 27855190 (+) |
| G2219327 | NA | non-coding | downstream | 32679 | 28370647 ~ 28371013 (+) |
| G2219964 | NA | non-coding | downstream | 177001 | 28514969 ~ 28539699 (+) |
| G2219983 | NA | non-coding | downstream | 203197 | 28541165 ~ 28541401 (+) |
| G2219984 | NA | non-coding | downstream | 203620 | 28541588 ~ 28541906 (+) |
| G2219990 | NA | non-coding | downstream | 210432 | 28548400 ~ 28548917 (+) |
| LOC110521656 | LOC106584103 | other | upstream | 492241 | 27823914 ~ 27844041 (+) |
| LOC110521646 | LOC106584219 | other | upstream | 833259 | 27497328 ~ 27519290 (+) |
| G2218483 | NA | other | upstream | 1109634 | 27225374 ~ 27226305 (+) |
| LOC110521633 | LOC106584207 | other | upstream | 1583475 | 26695809 ~ 26795605 (+) |
| G2219989 | LOC105940532 | other | downstream | 209570 | 28547538 ~ 28548084 (+) |
| G2219991 | NA | other | downstream | 211061 | 28549029 ~ 28549478 (+) |
| G2220253 | NA | other | downstream | 683618 | 29021586 ~ 29021882 (+) |
| LOC110521703 | LOC106584150 | other | downstream | 2525856 | 30863624 ~ 30866524 (+) |
| G2225948 | NA | other | downstream | 5234172 | 33572140 ~ 33604894 (+) |
