LOC110504452 (LOC106592046)


Basic Information

Item Value
gene id LOC110504452
gene name LOC106592046
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 2713388 ~ 2741674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970009.1
GGGTGAGGAAATGTGCCCTCTTTCGGCTCGAGCTAGACCCTGCTCTCTGAGAAGGTGGGTCAGCTTATGGACTGGACAGGGAAGAGAGCTGTGATCCGTATGAACGGGGAGAAGTTTCGTCGCTTTGTGAAGGCTCCTCCCAGGAACTACTCTGTGGTCATCATGTTCACCGCCCTGCAGCCACAGAGACAGTGTGGCGTCTGCAAACAGGCTGACGAGGAGTACCAGATCCTAGCTAATTCCTGGCGTTACTCCAGTGCCTTCACCAACAAAGTCTTCTTCGCTACCGTCGACTTTGATGAAGGATCTGACGTCTTTCAGATGTTGAATATGAACTCGGCTCCCTCCTTCATCCATTTCCCTGCTAAAGGGAAGCCTAAGAAGTCTGACTCCTATGAGCTGCAGGTCAGAGGCTTTGCTGCAGAGCAACTGGCCCGCTGGGTCGGGGACCGCACTGACGTACAGatccGTGTGATCCGTCCTCCTAACTATGCGGGGCCGTTGATGCTGGGATTCCTGCTGGCAGTCATAGGAGGACTGGCTTACCTCCGCAGAAACAACCTGGAATTCCTCTACAACAAGAACGTCTGGGCCTTCTCTGCTCTGTGTTTCTGCCTGATCATGACTTCAGGTCAGATGTGGAACCACATTAGAGGACCTCCCTACGCCCACAagaaccccaccactggacaagtgAGTTACATCCACGGCAGCAGTCAGGCCCAGTTTGTAGCAGAAACTCACATCGTGCTGCTCTTCAACTCTGCTGTTACCATGGGGATGGTGCTGTTGCACGAGGCTGCCACGTCAGATATGGACATTGGCAAGAGGAAAAtCATGTGTGTAGCAGGGATCGGTCTGGTGATGCTCTTCTTCAGTTGGCTGCTGTCCATCTTTAGAGCTAAATACCATGGATACCCTTACAgTTTCCTGTTGAGTTAGAGAGCTGGGAGGAAGAAGCCTGGAAACTCCATAGTGCCTCGGACGCCTCACACACCAGAACACTGTTCATCTGGGGTTATCTCCTCTTCTGTTGCTGGAAACTACCAGGAAGACATTGTTTACATTGACATTCACAAAGTTCACAATGTCTTTTTATTAATAAATACTGTACATGACTATAAACATAA
>XM_036970008.1
GGCGGAAAATCGACCAATCGGAATGTTACAGAGAATCCTTCAATCCGAGGTCAGTCGATTGACGGAAGCGCCTCTGTGAAAGATGATTAAAATGTATCTAAAAGTTTTATATtcgttgttgttgatgttgagttTCTATGGAATCCCTTCAACCGGACAGAAGAAAAAGGAGACCCTGCTCTCTGAGAAGGTGGGTCAGCTTATGGACTGGACAGGGAAGAGAGCTGTGATCCGTATGAACGGGGAGAAGTTTCGTCGCTTTGTGAAGGCTCCTCCCAGGAACTACTCTGTGGTCATCATGTTCACCGCCCTGCAGCCACAGAGACAGTGTGGCGTCTGCAAACAGGCTGACGAGGAGTACCAGATCCTAGCTAATTCCTGGCGTTACTCCAGTGCCTTCACCAACAAAGTCTTCTTCGCTACCGTCGACTTTGATGAAGGATCTGACGTCTTTCAGATGTTGAATATGAACTCGGCTCCCTCCTTCATCCATTTCCCTGCTAAAGGGAAGCCTAAGAAGTCTGACTCCTATGAGCTGCAGGTCAGAGGCTTTGCTGCAGAGCAACTGGCCCGCTGGGTCGGGGACCGCACTGACGTACAGatccGTGTGATCCGTCCTCCTAACTATGCGGGGCCGTTGATGCTGGGATTCCTGCTGGCAGTCATAGGAGGACTGGCTTACCTCCGCAGAAACAACCTGGAATTCCTCTACAACAAGAACGTCTGGGCCTTCTCTGCTCTGTGTTTCTGCCTGATCATGACTTCAGGTCAGATGTGGAACCACATTAGAGGACCTCCCTACGCCCACAagaaccccaccactggacaagtgAGTTACATCCACGGCAGCAGTCAGGCCCAGTTTGTAGCAGAAACTCACATCGTGCTGCTCTTCAACTCTGCTGTTACCATGGGGATGGTGCTGTTGCACGAGGCTGCCACGTCAGATATGGACATTGGCAAGAGGAAAAtCATGTGTGTAGCAGGGATCGGTCTGGTGATGCTCTTCTTCAGTTGGCTGCTGTCCATCTTTAGAGCTAAATACCATGGATACCCTTACAgTTTCCTGTTGAGTTAGAGAGCTGGGAGGAAGAAGCCTGGAAACTCCATAGTGCCTCGGACGCCTCACACACCAGAACACTGTTCATCTGGGGTTATCTCCTCTTCTGTTGCTGGAAACTACCAGGAAGACATTGTTTACATTGACATTCACAAAGTTCACAATGTCTTTTTATTAATAAATACTGTACATGACTATAAACATAA
>XM_036970007.1
ctctctccatttAATACAGGTGGTTAACGTAAACAACCCTCATCAAATACTAAAAACAAGCATTACAATAAGGAGATGCCCCACCCCAATCAGAAAAAAACGGAAGTAGGATGTCTCGCTTTCTTTACAGTCTCTGCCCCTATCACGCCATTGGCTCTTGAGGCGGAAAATCGACCAATCGGAATGTTACAGAGAATCCTTCAATCCGAGACCCTGCTCTCTGAGAAGGTGGGTCAGCTTATGGACTGGACAGGGAAGAGAGCTGTGATCCGTATGAACGGGGAGAAGTTTCGTCGCTTTGTGAAGGCTCCTCCCAGGAACTACTCTGTGGTCATCATGTTCACCGCCCTGCAGCCACAGAGACAGTGTGGCGTCTGCAAACAGGCTGACGAGGAGTACCAGATCCTAGCTAATTCCTGGCGTTACTCCAGTGCCTTCACCAACAAAGTCTTCTTCGCTACCGTCGACTTTGATGAAGGATCTGACGTCTTTCAGATGTTGAATATGAACTCGGCTCCCTCCTTCATCCATTTCCCTGCTAAAGGGAAGCCTAAGAAGTCTGACTCCTATGAGCTGCAGGTCAGAGGCTTTGCTGCAGAGCAACTGGCCCGCTGGGTCGGGGACCGCACTGACGTACAGatccGTGTGATCCGTCCTCCTAACTATGCGGGGCCGTTGATGCTGGGATTCCTGCTGGCAGTCATAGGAGGACTGGCTTACCTCCGCAGAAACAACCTGGAATTCCTCTACAACAAGAACGTCTGGGCCTTCTCTGCTCTGTGTTTCTGCCTGATCATGACTTCAGGTCAGATGTGGAACCACATTAGAGGACCTCCCTACGCCCACAagaaccccaccactggacaagtgAGTTACATCCACGGCAGCAGTCAGGCCCAGTTTGTAGCAGAAACTCACATCGTGCTGCTCTTCAACTCTGCTGTTACCATGGGGATGGTGCTGTTGCACGAGGCTGCCACGTCAGATATGGACATTGGCAAGAGGAAAAtCATGTGTGTAGCAGGGATCGGTCTGGTGATGCTCTTCTTCAGTTGGCTGCTGTCCATCTTTAGAGCTAAATACCATGGATACCCTTACAgTTTCCTGTTGAGTTAGAGAGCTGGGAGGAAGAAGCCTGGAAACTCCATAGTGCCTCGGACGCCTCACACACCAGAACACTGTTCATCTGGGGTTATCTCCTCTTCTGTTGCTGGAAACTACCAGGAAGACATTGTTTACATTGACATTCACAAAGTTCACAATGTCTTTTTATTAATAAATACTGTACATGACTATAAACATAA

Function

NR:

description
magnesium transporter protein 1

GO: NA

KEGG:

id description
K19478 MAGT1; magnesium transporter 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970009.1 False 1130 mRNA 0.51 10 2713388 2741055
XM_036970008.1 False 1266 mRNA 0.49 10 2713388 2741513
XM_036970007.1 True 1304 mRNA 0.49 10 2713388 2741674

Neighbor

gene id symbol gene type direction distance location
LOC110504350 LOC106612322 coding downstream 92216 2587898 ~ 2621172 (-)
si:ch211-274f20.2 LOC106612323 coding downstream 128191 2575623 ~ 2585197 (-)
lpar4 LOC106612318 coding downstream 342793 2361115 ~ 2370595 (-)
tbx22 LOC106590980 coding downstream 547485 2143315 ~ 2165903 (-)
sh3bgrl LOC106612317 coding downstream 622948 2034918 ~ 2090440 (-)
LOC118945987 NA coding upstream 812516 3554190 ~ 3556559 (-)
LOC118946073 NA coding upstream 1225960 3967634 ~ 3968806 (-)
LOC110489654 LOC104930052 coding upstream 1227242 3968916 ~ 4058166 (-)
higd2a LOC106612309 coding upstream 1357093 4098767 ~ 4100716 (-)
LOC110504518 LOC106612310 coding upstream 1388980 4130654 ~ 4199943 (-)
G2243645 NA non-coding downstream 3711 2708958 ~ 2709677 (-)
G2243610 NA non-coding downstream 78469 2634713 ~ 2634919 (-)
G2243598 NA non-coding downstream 86517 2626497 ~ 2626871 (-)
G2243596 NA non-coding downstream 86999 2626182 ~ 2626389 (-)
G2243594 NA non-coding downstream 89550 2623561 ~ 2623838 (-)
G2243714 NA non-coding upstream 2885 2744559 ~ 2745006 (-)
G2243715 NA non-coding upstream 4084 2745758 ~ 2746011 (-)
G2243716 NA non-coding upstream 5266 2746940 ~ 2747157 (-)
G2243717 NA non-coding upstream 5563 2747237 ~ 2747455 (-)
G2243719 NA non-coding upstream 12896 2754570 ~ 2755288 (-)
G2242632 NA other downstream 1319673 1390378 ~ 1393715 (-)
G2242341 LOC106604099 other downstream 1753726 936604 ~ 959662 (-)
LOC110504451 LOC106611915 other downstream 2002708 708100 ~ 710842 (-)
G2242265 NA other downstream 2102322 609651 ~ 611066 (-)
G2243777 NA other upstream 143617 2885291 ~ 2887459 (-)
G2243801 NA other upstream 195034 2936604 ~ 2937542 (-)
G2244811 NA other upstream 1370028 4111702 ~ 4113001 (-)
G2245152 ctnna1 other upstream 1794167 4535841 ~ 4621990 (-)

Expression


Co-expression Network