LOC118945987


Basic Information

Item Value
gene id LOC118945987
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 3554190 ~ 3556559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969641.1
ATGTTGCATCAGTTAGCAACAAGCAGTAACAGCCCCAAACAACTCCACGCAAAACATTCAGCAACATTCCCTCTCCACACAGCCCTCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAACCAGGCTCCACACAACCAGGCTCCACACAACCAGGCTCCACACAGCCCCTCTCCACACAACCAGGCTCCACACAACCAGGCTCCACACAGCCCCTCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCCACACAACCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACACCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCAGGCTCCACACAACCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCAACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACACCCAGGCTCCACACAGCCAGGCTCCACACAACCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCATGCTCCACACAGCCAGGCTCCACACAACCAGGCTCCACACAGCCAGGCTCCACAAAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCAGGCTCCACACAACCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCAGGCTCCACACAACCAGGCTCCACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCAACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACACCCAGGCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCCCCTCTAAACACAACCAGGCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTCCACACAGCCCCTCTAAACACACCCAGGCTCCACACAGCCCCTCTCCACACAGCCCATCTAAACACAGCCACTCTAAACACAGCCCCTCTAAACACAGCCCCTCTAAACACAGCCCCTCTCCACACAGCCCCTCTAAACACAACCAGGCTCCACACAGCCCCTCTCCACACAGCCCCTCTAAACACAGCCCCTCTAAACACAGCCCCTCTAAACACAGCCCCTCTAAACACAGCCCCTCTCCACACAGCCCCTCTAAACACAGCCCCTCTCCACACAGCCCCTCTAAACACAGCCCCTCTAAACACAGCCAGGCTCCACACAGCTCTGCAACATATTTACTTTATAATACACTGCTGTTAACCAGGGTCCATTAA

Function

NR:

description
PREDICTED: high mobility group nucleosome-binding domain-containing protein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969641.1 True 2370 mRNA 0.60 1 3554190 3556559

Neighbor

gene id symbol gene type direction distance location
LOC110504452 LOC106592046 coding downstream 812516 2713388 ~ 2741674 (-)
LOC110504350 LOC106612322 coding downstream 933018 2587898 ~ 2621172 (-)
si:ch211-274f20.2 LOC106612323 coding downstream 968993 2575623 ~ 2585197 (-)
lpar4 LOC106612318 coding downstream 1183595 2361115 ~ 2370595 (-)
tbx22 LOC106590980 coding downstream 1388287 2143315 ~ 2165903 (-)
LOC118946073 NA coding upstream 411075 3967634 ~ 3968806 (-)
LOC110489654 LOC104930052 coding upstream 412357 3968916 ~ 4058166 (-)
higd2a LOC106612309 coding upstream 542208 4098767 ~ 4100716 (-)
LOC110504518 LOC106612310 coding upstream 574095 4130654 ~ 4199943 (-)
LOC110513918 syub coding upstream 679610 4236169 ~ 4290491 (-)
G2244363 NA non-coding downstream 35959 3517810 ~ 3518231 (-)
G2244355 NA non-coding downstream 54363 3499331 ~ 3499827 (-)
G2244302 NA non-coding downstream 134925 3418500 ~ 3419265 (-)
G2244128 NA non-coding downstream 180036 3373896 ~ 3374154 (-)
G2244126 NA non-coding downstream 180988 3372512 ~ 3373202 (-)
G2244389 NA non-coding upstream 20063 3576622 ~ 3577575 (-)
G2244400 NA non-coding upstream 41783 3598342 ~ 3599097 (-)
G2244421 NA non-coding upstream 81515 3638074 ~ 3639114 (-)
G2244453 NA non-coding upstream 159875 3716434 ~ 3716946 (-)
G2244458 NA non-coding upstream 172360 3728919 ~ 3730256 (-)
G2243801 NA other downstream 616648 2936604 ~ 2937542 (-)
G2243777 NA other downstream 666731 2885291 ~ 2887459 (-)
G2242632 NA other downstream 2160475 1390378 ~ 1393715 (-)
G2242341 LOC106604099 other downstream 2594528 936604 ~ 959662 (-)
G2244811 NA other upstream 555143 4111702 ~ 4113001 (-)
G2245152 ctnna1 other upstream 979282 4535841 ~ 4621990 (-)
G2246314 NA other upstream 2291560 5848119 ~ 5852599 (-)
G2247416 NA other upstream 3314028 6870587 ~ 6871100 (-)

Expression


Co-expression Network