LOC110504506 (LOC106612265)


Basic Information

Item Value
gene id LOC110504506
gene name LOC106612265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7127869 ~ 7201500 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583260.2
CCCCGGTGGCAGAAATAGATTCACTCGCTGAAACTTAACGTGTCTCCTCCTGTCACCGACATCAACCTTACCGCACAACGCACAGCTCAACTCACAACAAAAGCAACCGAATCGAGTCGTGCAGTCAGTCGAGTGATTAAACTGAATACAGTAACCCCGGATTGGTATCTATCTAGGTAGATTTATCTACTCAACCAGTCGCAAACGTGGCGAGAAGCATTATACAAACGGGTCTACTGCTGAACATGAGTACGGAGATCTTCAAAACGCCAATGGAGGTTGCTGTCTATCAGTTGCATAACTTCAGCATCTCCTTCTTCTCCTCGTTAGTAGGAGGAGATGTGGTGTCTGTAAAACTCGACAACAGTGCCTCGGGTGCTAGCGTTGTTGCCATTGACAACAAGATAGAGCAGGCAATGGATCTGGTGAAGAACCACCTGATGTATGCAGTCAGGGAGGAAGTAGAGATCCTCAAGGAGCAGATCAGAGAGCTGGCTGAGAAGAACAACCAGCTAGAACGTGAGAACAGCCTTCTGAAGAACCTGGCCAGTCCAGAACAGATGGAGAGCTTCCGCGAACGGGTTCCGTCCGACTCAGACGCTCTGGTCCCCCTGCGGCTGGACAACCAGTACCAGCAGCAGGCTCAGCAGTACCAGCAACAGGCCCAGATGGGACTCCATAACCCTGACCAGTCCTGCCACATCAGCGCTGGCTCTGCTGTGTAGGTGGTTCTGCCTTGGACAGTTGTAAACTAATCGTCACTGCCAACTTCAGTGAAGCTGTCTGTAGCAGACGATGAAACACAACGGAGCACGTGAAAAGGAGCTCTAACTAGCGGCTATAGGCTGAAGCTATAAGCTAAGATGATGAGCCTTTCCTACGACATCTAGACTATTTCTCTTTAGACAAAATGTCTAAACGAGAGGGCTCACATGTAGCCAGTCGGAGAACGCTTGCATTGGGACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACCACCCCTGCTACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACTACCCCTGctacagaggggggagagggctAAAAGACAGGGCTGGCCCGGGGATGCCTCTCCACGCCAGGGTGGCCCGTCCTCCAGCTTACCTCTCCAGGTCCAGCCAAGGAAAAAGGAAATCTTCCccaagacagacagatagacggcCTTCCAGTCTCTGCTAGACCCCCCCTATGTGGATTTCTTCTTCTGACAGTACAAGTTCTGAGGAGTCAGACAATATCTCTACTATCTTGTGACTGTTTCCACCTGTCCCACCATCTACTGACATTCTCCGTCAATATTCCTTAAGAAGAAGCAACGTGTCTTCGGGGGAAACCAAACCTGAGCTCCAGTACAACGagtagaggagaaggaggatcTAGGAGATCCTGGACTGTTGCTGGAGAAAGAGAGGCCTGTTGCTTCTCTATCTCAACCTCACTGCCGATAACTGATTGCCATAATCATGATTCAGATCATCATTACTTGTATTCTCTGCAGTTGGAGTTGTGTTGCTTTATGGGGGAAAATCCTGCTATTTTACTTTTCTTCTGATTCTGAACAAAATGGAATGCTTGTTAATAGGAGCGTTGTAACTGTTCAGATAAATGATTTATTATGGGGATGGAAGTATCTACTACCCAGAATGCCTAGCTCTGTACATTTTACTAACATGTTCAGAGTAGTGGGCTGGAGATGAATTTGAGCagctgatttttttttcttctctaaaGGCTGTGAATGCAGTCTTGACCTAGCAGACATGTTCTGAGTGTTCAGATGCCAACCTCAACTTGAATCAATGGCATGACTCTAGGTGCCTATCTCCAGAAGAGGAATAACACAGTTCCACAATGGACGTTTTGTGTTTTCTAACTACCAAAGACTTTGTCTCATTACTACTCCAAACGAAACCAAGCAACCTGGACCATGTGTACATCGTTCACAGGGAGGAGAACTCTTGTTAGCAGTAATGTTTAGTTTTTTTGATAAACGTTGggtattgttgctgtactgtgtCCATGAAACAGGTATATATTTTAAAGTATGTAATGGATACAAAATGCACATTTGTAATAAACCCTAAGTTTACACCTAAA
>XM_021583259.1
TTGTTGGTCATTGGGATGGGAGCCTGTCGGTCGCGTCCCCGCGTTGTCCCACTCCCTAGCCAGGCCAGAAGCAGACCACCTCTCCCATCCCCTGGGCCAGCCCAGGAAACCATCCAGCGACTAGCCGAGCCGCCTGCTGCCGTCCCAGCCCCACTGCAGACACAGAGGCGTCTGAGCAGCGTTGCGAGAGCCATGAACTACCACTACCAACCCCCCTACTCACCTAGTCTGTCCCAGAGGGGGTATCGGCGTGCCTCGGGTGCTAGCGTTGTTGCCATTGACAACAAGATAGAGCAGGCAATGGATCTGGTGAAGAACCACCTGATGTATGCAGTCAGGGAGGAAGTAGAGATCCTCAAGGAGCAGATCAGAGAGCTGGCTGAGAAGAACAACCAGCTAGAACGTGAGAACAGCCTTCTGAAGAACCTGGCCAGTCCAGAACAGATGGAGAGCTTCCGCGAACGGGTTCCGTCCGACTCAGACGCTCTGGTCCCCCTGCGGCTGGACAACCAGTACCAGCAGCAGGCTCAGCAGTACCAGCAACAGGCCCAGATGGGACTCCATAACCCTGACCAGTCCTGCCACATCAGCGCTGGCTCTGCTGTGTAGGTGGTTCTGCCTTGGACAGTTGTAAACTAATCGTCACTGCCAACTTCAGTGAAGCTGTCTGTAGCAGACGATGAAACACAACGGAGCACGTGAAAAGGAGCTCTAACTAGCGGCTATAGGCTGAAGCTATAAGCTAAGATGATGAGCCTTTCCTACGACATCTAGACTATTTCTCTTTAGACAAAATGTCTAAACGAGAGGGCTCACATGTAGCCAGTCGGAGAACGCTTGCATTGGGACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACCACCCCTGCTACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACTACCCCTGctacagaggggggagagggctAAAAGACAGGGCTGGCCCGGGGATGCCTCTCCACGCCAGGGTGGCCCGTCCTCCAGCTTACCTCTCCAGGTCCAGCCAAGGAAAAAGGAAATCTTCCccaagacagacagatagacggcCTTCCAGTCTCTGCTAGACCCCCCCTATGTGGATTTCTTCTTCTGACAGTACAAGTTCTGAGGAGTCAGACAATATCTCTACTATCTTGTGACTGTTTCCACCTGTCCCACCATCTACTGACATTCTCCGTCAATATTCCTTAAGAAGAAGCAACGTGTCTTCGGGGGAAACCAAACCTGAGCTCCAGTACAACGagtagaggagaaggaggatcTAGGAGATCCTGGACTGTTGCTGGAGAAAGAGAGGCCTGTTGCTTCTCTATCTCAACCTCACTGCCGATAACTGATTGCCATAATCATGATTCAGATCATCATTACTTGTATTCTCTGCAGTTGGAGTTGTGTTGCTTTATGGGGGAAAATCCTGCTATTTTACTTTTCTTCTGATTCTGAACAAAATGGAATGCTTGTTAATAGGAGCGTTGTAACTGTTCAGATAAATGATTTATTATGGGGATGGAAGTATCTACTACCCAGAATGCCTAGCTCTGTACATTTTACTAACATGTTCAGAGTAGTGGGCTGGAGATGAATTTGAGCagctgatttttttttcttctctaaaGGCTGTGAATGCAGTCTTGACCTAGCAGACATGTTCTGAGTGTTCAGATGCCAACCTCAACTTGAATCAATGGCATGACTCTAGGTGCCTATCTCCAGAAGAGGAATAACACAGTTCCACAATGGACGTTTTGTGTTTTCTAACTACCAAAGACTTTGTCTCATTACTACTCCAAACGAAACCAAGCAACCTGGACCATGTGTACATCGTTCACAGGGAGGAGAACTCTTGTTAGCAGTAATGTTTAGTTTTTTTGATAAACGTTGggtattgttgctgtactgtgtCCATGAAACAGGTATATATTTTAAAGTATGTAATGGATACAAAATGCACATTTGTAATAAACCCTAAGTTTACACCTAAA
>XM_021583258.2
tgctctctcttcctctttctctttctctcgctctccctgtctctccctctgtctctctctctctgtcactcttgcttcctctctctccctctctctctttaataatAACAATCGTGATGTAGCAGttgagagagcagagaaagaggagGGCCAGCCGTCTACCAATCACAAGgtttccccacctccctccctctgtctcgaAGCACGCAAACGttgggcaaaaaaaaaaagtgataagCAGCTTTGAAACGCGTTCCCGCTGAATCAGGGCGAGTGTGTTCGACTCAGACACAGACAGCACAGCATTggctaactctctctcctccacagacagacagcacagcattggctaactctctctctcccacagacaCAGAAGCGAGTGTCTCACAACCAAAGCAAACAAAGCCTTATTAACAGGACGAGTTTGAGAGTCAGGGAGACACGACTGACTGCCTACTctcagggaagaggaggaagctGAGGACACTTGACTTACCAACACAACCAATCCAGAGAACCTGGAGGGAGGCAATCCTTCCCTCTGCGTATGCTGAGGAATACAccctacacacaacaacaactacaagcCTGAGAAGAAGAGAGACCAGTGCCACGGTCTTTCTctttatacctctctctcctgctgtggAGCTCTATCCTCGTCTCTCCAGTCCCTCAAGGTATTCTGCTGACCTGACTGCCTGATCTGCTGTCATCATGTCAGAAGGAGAAGAATGTCGCTCTCCCATCGGTCTggactgctgctcctgctgcctggACCTGGCTAACTGTGACGACCCAGctggaggagggggtgagggcaGAGGCAACAGCACCCCTCTGATGGGCAGCCCCACGTCGCTCAGCCACTTCCGCCAGTTCCGTGAGCAGCTGACGTTCCAGAACCAGAACGTGAACACAGACAAGCTGAACAGCATGATGAGGCTGGACTCTCTGGAGTCTGTGGTCAGAGACCCCTGTTACCTGCTCAACGAGGGCATCTGCAACAGCAACATCGACCAGACCACGCTGTCCATCCTGCTGTTCTTCCACAGTGCCTCGGGTGCTAGCGTTGTTGCCATTGACAACAAGATAGAGCAGGCAATGGATCTGGTGAAGAACCACCTGATGTATGCAGTCAGGGAGGAAGTAGAGATCCTCAAGGAGCAGATCAGAGAGCTGGCTGAGAAGAACAACCAGCTAGAACGTGAGAACAGCCTTCTGAAGAACCTGGCCAGTCCAGAACAGATGGAGAGCTTCCGCGAACGGGTTCCGTCCGACTCAGACGCTCTGGTCCCCCTGCGGCTGGACAACCAGTACCAGCAGCAGGCTCAGCAGTACCAGCAACAGGCCCAGATGGGACTCCATAACCCTGACCAGTCCTGCCACATCAGCGCTGGCTCTGCTGTGTAGGTGGTTCTGCCTTGGACAGTTGTAAACTAATCGTCACTGCCAACTTCAGTGAAGCTGTCTGTAGCAGACGATGAAACACAACGGAGCACGTGAAAAGGAGCTCTAACTAGCGGCTATAGGCTGAAGCTATAAGCTAAGATGATGAGCCTTTCCTACGACATCTAGACTATTTCTCTTTAGACAAAATGTCTAAACGAGAGGGCTCACATGTAGCCAGTCGGAGAACGCTTGCATTGGGACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACCACCCCTGCTACAGAGGGGAGGCTCCGGCCTTCTGGGGCCAGGAGGGCCAACCCCTTCAGCCATTCTCTACTACCCCTGctacagaggggggagagggctAAAAGACAGGGCTGGCCCGGGGATGCCTCTCCACGCCAGGGTGGCCCGTCCTCCAGCTTACCTCTCCAGGTCCAGCCAAGGAAAAAGGAAATCTTCCccaagacagacagatagacggcCTTCCAGTCTCTGCTAGACCCCCCCTATGTGGATTTCTTCTTCTGACAGTACAAGTTCTGAGGAGTCAGACAATATCTCTACTATCTTGTGACTGTTTCCACCTGTCCCACCATCTACTGACATTCTCCGTCAATATTCCTTAAGAAGAAGCAACGTGTCTTCGGGGGAAACCAAACCTGAGCTCCAGTACAACGagtagaggagaaggaggatcTAGGAGATCCTGGACTGTTGCTGGAGAAAGAGAGGCCTGTTGCTTCTCTATCTCAACCTCACTGCCGATAACTGATTGCCATAATCATGATTCAGATCATCATTACTTGTATTCTCTGCAGTTGGAGTTGTGTTGCTTTATGGGGGAAAATCCTGCTATTTTACTTTTCTTCTGATTCTGAACAAAATGGAATGCTTGTTAATAGGAGCGTTGTAACTGTTCAGATAAATGATTTATTATGGGGATGGAAGTATCTACTACCCAGAATGCCTAGCTCTGTACATTTTACTAACATGTTCAGAGTAGTGGGCTGGAGATGAATTTGAGCagctgatttttttttcttctctaaaGGCTGTGAATGCAGTCTTGACCTAGCAGACATGTTCTGAGTGTTCAGATGCCAACCTCAACTTGAATCAATGGCATGACTCTAGGTGCCTATCTCCAGAAGAGGAATAACACAGTTCCACAATGGACGTTTTGTGTTTTCTAACTACCAAAGACTTTGTCTCATTACTACTCCAAACGAAACCAAGCAACCTGGACCATGTGTACATCGTTCACAGGGAGGAGAACTCTTGTTAGCAGTAATGTTTAGTTTTTTTGATAAACGTTGggtattgttgctgtactgtgtCCATGAAACAGGTATATATTTTAAAGTATGTAATGGATACAAAATGCACATTTGTAATAAACCCTAAGTTTACACCTAAA

Function

NR:

description
uncharacterized protein LOC110504506 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583260.2 False 2178 mRNA 0.48 3 7127869 7131553
XM_021583259.1 False 2062 mRNA 0.50 3 7127869 7138960
XM_021583258.2 True 2869 mRNA 0.50 3 7127869 7201500

Neighbor

gene id symbol gene type direction distance location
LOC110504499 LOC106604166 coding downstream 705440 6116114 ~ 6422429 (-)
LOC118946011 NA coding downstream 1387817 5739294 ~ 5740052 (-)
LOC110504359 LOC106612272 coding downstream 1396863 5707418 ~ 5731006 (-)
LOC110504491 LOC106604157 coding downstream 1523089 5532859 ~ 5604780 (-)
LOC110504358 LOC106604155 coding downstream 1601077 5488729 ~ 5526792 (-)
LOC110504480 LOC106612296 coding upstream 496683 7698183 ~ 7725792 (-)
LOC110504483 LOC106612297 coding upstream 633743 7835243 ~ 7849870 (-)
LOC110504356 LOC106612292 coding upstream 656625 7858125 ~ 7871099 (-)
LOC110504484 smad5 coding upstream 670394 7871894 ~ 7892178 (-)
LOC110504485 tgfbi coding upstream 695211 7896711 ~ 7926759 (-)
G2247775 NA non-coding downstream 22547 7105093 ~ 7105322 (-)
G2247657 NA non-coding downstream 37904 7089060 ~ 7089965 (-)
G2247650 NA non-coding downstream 43656 7083889 ~ 7084213 (-)
G2247460 NA non-coding downstream 203078 6924165 ~ 6924791 (-)
G2247444 NA non-coding downstream 217704 6909963 ~ 6910165 (-)
G2247799 NA non-coding upstream 8016 7209516 ~ 7215849 (-)
G2247801 NA non-coding upstream 22726 7224226 ~ 7224947 (-)
G2247806 NA non-coding upstream 36224 7237724 ~ 7238081 (-)
G2247816 NA non-coding upstream 57188 7258688 ~ 7258920 (-)
G2247821 NA non-coding upstream 63713 7265213 ~ 7265524 (-)
G2247565 NA other downstream 103330 6938623 ~ 7024539 (-)
G2247416 NA other downstream 256769 6870587 ~ 6871100 (-)
G2246314 NA other downstream 1275270 5848119 ~ 5852599 (-)
G2245152 ctnna1 other downstream 2505879 4535841 ~ 4621990 (-)
G2244811 NA other downstream 3014868 4111702 ~ 4113001 (-)
G2247813 NA other upstream 53844 7255344 ~ 7255940 (-)
G2248522 NA other upstream 839376 8040876 ~ 8041480 (-)
G2248668 LOC106612284 other upstream 952411 8153911 ~ 8157963 (-)
c1qtnf2 c1qtnf2 other upstream 1945291 9145591 ~ 9148916 (-)
G2249506 NA other upstream 1948388 9149888 ~ 9150141 (-)

Expression


Co-expression Network