LOC110504485 (tgfbi)


Basic Information

Item Value
gene id LOC110504485
gene name tgfbi
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7896711 ~ 7926759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969871.1
CCTATAACCGTTTAGTCCTTCACTATATATTCCTGGTCGCACCGTTCTCCGACTTGTCGGGAGATCGGAGGCCAACAGAATAAGGGGAAAAGGCCAAGATGCAGCACTTAACTTTATTGACTTTGTCGCTCACCTTGATTGCAACGATTTGTTTTGCAAAGTCACCCTATCAATCAGTTCTTCAGCACAGCAGGATAAGAGGCAGACAGCATGGACCCAATGTGTGCGCGATGCAAAAGATACAGGGGACGGACAAGAAATATTTCACCAACTGCAAGCAATGGTACCATCGCAAGATCTGCGGCAAACCAACGGTGATCAGCTATGAGTGTTGCCCCGGTTATGAGAAGCTTCCAGGAGAGAAGGGTTGTCCTGCTGCCCTGCCGTTAGTGAACATCTACAACACGCTGGGTGTGGTTGGAGCCGCCACCACCAAGATGTACTCAGAGAGGGCTCAGCTGAGGGAGGAGATCGAAGGACCAGGGAGCTTCACCTTTTTCGCTCCCAGCAACCAGGCCTGGGCGGCCCTACCCAACGAAATCCTGGATGCTCTGGTGAGTAACGTGAATATTGAGCTTCTCAACGCGCTCCACTACCACATGGTGAACCGCCGTTTGACCTCTGAGGACCTGAAGCACGGATCTGCCTTCCCCTCCATGTACCAAGACTTCAACCTTCACATCCACCACTACCCCAACGGAATTGTAACAGTGAACTGTGCTCGTCTGGTGAAAACAGACCAGCATGCGACCAACGGGATCGTGCACGTCGTGGACAGAGTCATCACCGCGGTTACCAACGACGTGCACACTTTCATCGACACCGATGATGATCTGGAGACTCTTCGTaatgctgttgctgctgctggtcTGACCCAAATGCTGGAGAGCGATGGTCACTACACGGTGTTCGCTCCAACCAACGAAGCCTTCGAGAAGATCCCCCCTGAAATGCTCAACAGGATCCTGGGAGACCCCGTGGCTCTGAAAGACCTGCTGAACTACCACATCCTGAAGAACATGCAGTGTGCAGAGTCCATCACATCTGGTACTCCCCTGGAGACCCTACAGGGGACCGTTCTAGAGGTGGGCTGTGATGGGGCTGACATGACCCTCAACGGGAAGGCCATCATCCAGAAGAAAGACCAGCTGGGGACCAACGGGGTCGTCCACTACATCAACGAGCTCCTCATCCCAGACTCAGCTAAGACTTTGTTGGAGCTGGCCCAGGGATCTGCCGTTACCACAGCGACCAAGCTGTTTGTTGATGCTGGTCTTGGCTCCCACCTTTCTGGCTCAGAGGCTCTGACCATCCTGACCCCTCAGAATGAAGCTTTCAAAGAGGGTGTGACAATGACTGGTGACCTGAAGAAGCTGTTGAAGAACCACATCCTGAAGGAGCAGCTGTCTTCCGGGTCACTGTACTACGGGCAAGAGCTAGAGACTCTGGGAGGAATCAAACTCAGAGTGTTCGTCTACCGTAACAGCCTGTGCATAGAGAACTCCTGTATCGTTGCCCACGACAAGATCGGCCGTTTCGGTAGCATGTTCACAGTCGACAAAGTCCTGACTCCCCCAATGGGCACCATCATGGATGTCCTGAAGGCTGATAACCGATTCAGTCTGTTGGTCGGTGCCATCCAGACGGCTGGCTTGACAGAGCTGATGAACCAGGCCGGTCCCCATACCGTGTTCGCTCCCACCAACGATGCTTTCAGCGCCTTGCCAAAGGCTGACCTCAACAAACTCATGAGCAACCCCAAGGAGCTGGCCAGTGTGTTGAAGTACCACATGGCTAAGGAGATTCTGGTCAGTGGAGGAGTGGGCTCCCATACCAGACTGAAGCCTCTGCAGGGAGACAAGCTGGAGCTGAACATGTGGAGAAAAGAGAGGAACCAGACCGTGTACATCAACAAGGTCCCAGTGGTTGAAGCCGACTTGATGGCCACCAATGGAGTTGTCCACGCTGTGGGAGCCATCATAAAGCCACTGCCTCCTAAGGTTGACAGGGAACAGGCTGATGCCCCCGTCTCTTCCATGAGAACGGACTCAAGAATCGGAGTAAAAAATGaTGACCTCTTCCAGAAGGTCAGGAAAAGTCTCTCCAGCAGGACGATGAGTCGCGTCCAGTAAAACAAATTtaagaggagaaaaaaaaaaaaacataattgccTACAGTACATCAACACAAAATCAGGGGATTGTTACTTTTGTTGATGGAAAATATTCTTATTTGGAACTCTAAAAGGGAGTCTTATCGATCTAATTTAGTCAAAGAGGATCAATAATAAACCAGCATTAGATGAACACAGAGATGGGATATCTCTTAGTGGAATATGTTATATAATTGCTTTCATATACCAAAAACCGAAGATTTGAATTGAAATAGAATTAACTTTGTCTGTTTTCTTTCATGTAAAAATGGTcaaccccaaaaaaaaaaaacagcaactaGCTATGACTACCTGTACTGTAGTTTTATCAGTGTTTTGAATGTTCACACGTGACTTCTGTTTTTAAATGTAAACGCAGAgcagatttttttgtttgttgagaaatgtatactgtattttgttttgatatgataGATGTAGCATGTTTTGCATGTTTAGGCTGGAACGGAAAAGCTATTCGTGCACACGCAAATGAAGGTTGAAGTCATGGCCTCTTCGGTTCTGATTCTCTTTCACTTTTTTTGTTGTCATTAAACCTAACCTAAACAATAATGCACCCACAGTCAAGTCACATGCTTTCCATGTGTAACAGACTGTAGCAATATAATTTTGTGTGGAAACCAAAGAGCAATGGTCGCACATttcaaaaataaaatgttcatTTTGTA
>XM_036969872.1
CCTATAACCGTTTAGTCCTTCACTATATATTCCTGGTCGCACCGTTCTCCGACTTGTCGGGAGATCGGAGGCCAACAGAATAAGGGGAAAAGGCCAAGATGCAGCACTTAACTTTATTGACTTTGTCGCTCACCTTGATTGCAACGATTTGTTTTGCAAAGTCACCCTATCAATCAGTTCTTCAGCACAGCAGGATAAGAGGCAGACAGCATGGACCCAATGTGTGCGCGATGCAAAAGATACAGGGGACGGACAAGAAATATTTCACCAACTGCAAGCAATGGTACCATCGCAAGATCTGCGGCAAACCAACGGTGATCAGCTATGAGTGTTGCCCCGGTTATGAGAAGCTTCCAGGAGAGAAGGGTTGTCCTGCTGCCCTGCCGTTAGTGAACATCTACAACACGCTGGGTGTGGTTGGAGCCGCCACCACCAAGATGTACTCAGAGAGGGCTCAGCTGAGGGAGGAGATCGAAGGACCAGGGAGCTTCACCTTTTTCGCTCCCAGCAACCAGGCCTGGGCGGCCCTACCCAACGAAATCCTGGATGCTCTGGTGAGTAACGTGAATATTGAGCTTCTCAACGCGCTCCACTACCACATGGTGAACCGCCGTTTGACCTCTGAGGACCTGAAGCACGGATCTGCCTTCCCCTCCATGTACCAAGACTTCAACCTTCACATCCACCACTACCCCAACGGAATTGTAACAGTGAACTGTGCTCGTCTGGTGAAAACAGACCAGCATGCGACCAACGGGATCGTGCACGTCGTGGACAGAGTCATCACCGCGGTTACCAACGACGTGCACACTTTCATCGACACCGATGATGATCTGGAGACTCTTCGTaatgctgttgctgctgctggtcTGACCCAAATGCTGGAGAGCGATGGTCACTACACGGTGTTCGCTCCAACCAACGAAGCCTTCGAGAAGATCCCCCCTGAAATGCTCAACAGGATCCTGGGAGACCCCGTGGCTCTGAAAGACCTGCTGAACTACCACATCCTGAAGAACATGCAGTGTGCAGAGTCCATCACATCTGGTACTCCCCTGGAGACCCTACAGGGGACCGTTCTAGAGGTGGGCTGTGATGGGGCTGACATGACCCTCAACGGGAAGGCCATCATCCAGAAGAAAGACCAGCTGGGGACCAACGGGGTCGTCCACTACATCAACGAGCTCCTCATCCCAGACTCAGCTAAGACTTTGTTGGAGCTGGCCCAGGGATCTGCCGTTACCACAGCGACCAAGCTGTTTGTTGATGCTGGTCTTGGCTCCCACCTTTCTGGCTCAGAGGCTCTGACCATCCTGACCCCTCAGAATGAAGCTTTCAAAGAGGGTGTGACAATGACTGGTGACCTGAAGAAGCTGTTGAAGAACCACATCCTGAAGGAGCAGCTGTCTTCCGGGTCACTGTACTACGGGCAAGAGCTAGAGACTCTGGGAGGAATCAAACTCAGAGTGTTCGTCTACCGTAACAGCCTGTGCATAGAGAACTCCTGTATCGTTGCCCACGACAAGATCGGCCGTTTCGGTAGCATGTTCACAGTCGACAAAGTCCTGACTCCCCCAATGGGCACCATCATGGATGTCCTGAAGGCTGATAACCGATTCAGTCTGTTGGTCGGTGCCATCCAGACGGCTGGCTTGACAGAGCTGATGAACCAGGCCGGTCCCCATACCGTGTTCGCTCCCACCAACGATGCTTTCAGCGCCTTGCCAAAGGCTGACCTCAACAAACTCATGAGCAACCCCAAGGAGCTGGCCAGTGTGTTGAAGTACCACATGGCTAAGGAGATTCTGGTCAGTGGAGGAGTGGGCTCCCATACCAGACTGAAGCCTCTGCAGGGAGACAAGCTGGAGCTGAACATGAGGAACCAGACCGTGTACATCAACAAGGTCCCAGTGGTTGAAGCCGACTTGATGGCCACCAATGGAGTTGTCCACGCTGTGGGAGCCATCATAAAGCCACTGCCTCCTAAGGTTGACAGGGAACAGGCTGATGCCCCCGTCTCTTCCATGAGAACGGACTCAAGAATCGGAGTAAAAAATGaTGACCTCTTCCAGAAGGTCAGGAAAAGTCTCTCCAGCAGGACGATGAGTCGCGTCCAGTAAAACAAATTtaagaggagaaaaaaaaaaaaacataattgccTACAGTACATCAACACAAAATCAGGGGATTGTTACTTTTGTTGATGGAAAATATTCTTATTTGGAACTCTAAAAGGGAGTCTTATCGATCTAATTTAGTCAAAGAGGATCAATAATAAACCAGCATTAGATGAACACAGAGATGGGATATCTCTTAGTGGAATATGTTATATAATTGCTTTCATATACCAAAAACCGAAGATTTGAATTGAAATAGAATTAACTTTGTCTGTTTTCTTTCATGTAAAAATGGTcaaccccaaaaaaaaaaaacagcaactaGCTATGACTACCTGTACTGTAGTTTTATCAGTGTTTTGAATGTTCACACGTGACTTCTGTTTTTAAATGTAAACGCAGAgcagatttttttgtttgttgagaaatgtatactgtattttgttttgatatgataGATGTAGCATGTTTTGCATGTTTAGGCTGGAACGGAAAAGCTATTCGTGCACACGCAAATGAAGGTTGAAGTCATGGCCTCTTCGGTTCTGATTCTCTTTCACTTTTTTTGTTGTCATTAAACCTAACCTAAACAATAATGCACCCACAGTCAAGTCACATGCTTTCCATGTGTAACAGACTGTAGCAATATAATTTTGTGTGGAAACCAAAGAGCAATGGTCGCACATttcaaaaataaaatgttcatTTTGTA

Function

symbol description
tgfbi Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within cellular response to xenobiotic stimulus and muscle cell development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including head mesenchyme; liver; neural crest cell; paraxial mesoderm; and splanchnocranium. Human ortholog(s) of this gene implicated in corneal dystrophy (multiple). Orthologous to human TGFBI (transforming growth factor beta induced).

NR:

description
PREDICTED: transforming growth factor-beta-induced protein ig-h3 isoform X1

GO: NA

KEGG:

id description
K19519 TGFBI, BIGH3; transforming growth factor-beta-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969871.1 False 2841 mRNA 0.48 18 7896711 7926759
XM_036969872.1 True 2829 mRNA 0.48 17 7896711 7926759

Neighbor

gene id symbol gene type direction distance location
LOC110504484 smad5 coding downstream 4533 7871894 ~ 7892178 (-)
LOC110504356 LOC106612292 coding downstream 25612 7858125 ~ 7871099 (-)
LOC110504483 LOC106612297 coding downstream 46841 7835243 ~ 7849870 (-)
LOC110504480 LOC106612296 coding downstream 170919 7698183 ~ 7725792 (-)
LOC110504506 LOC106612265 coding downstream 695211 7127869 ~ 7201500 (-)
LOC110504508 LOC106612286 coding upstream 164275 8091034 ~ 8104745 (-)
LOC110504516 LOC106612282 coding upstream 246462 8173221 ~ 8224552 (-)
LOC110504517 LOC106604175 coding upstream 322773 8249532 ~ 8264238 (-)
LOC110504538 g3bp1 coding upstream 690205 8616964 ~ 8627201 (-)
sparc sparc coding upstream 710829 8637588 ~ 8656945 (-)
G2248439 NA non-coding downstream 32139 7863615 ~ 7864572 (-)
G2248432 NA non-coding downstream 45122 7851365 ~ 7851589 (-)
G2248436 NA non-coding downstream 45662 7850743 ~ 7851049 (-)
G2248456 NA non-coding upstream 1767 7928526 ~ 7929157 (-)
G2248500 LOC106594768 non-coding upstream 86601 8013360 ~ 8016525 (-)
G2248510 NA non-coding upstream 95561 8022320 ~ 8024911 (-)
G2248514 NA non-coding upstream 109249 8036008 ~ 8036219 (-)
G2248519 NA non-coding upstream 112285 8039044 ~ 8039284 (-)
G2247813 NA other downstream 640771 7255344 ~ 7255940 (-)
G2247565 NA other downstream 872172 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1025611 6870587 ~ 6871100 (-)
G2246314 NA other downstream 2044112 5848119 ~ 5852599 (-)
G2245152 ctnna1 other downstream 3274721 4535841 ~ 4621990 (-)
G2248522 NA other upstream 114117 8040876 ~ 8041480 (-)
G2248668 LOC106612284 other upstream 227152 8153911 ~ 8157963 (-)
c1qtnf2 c1qtnf2 other upstream 1220032 9145591 ~ 9148916 (-)
G2249506 NA other upstream 1223129 9149888 ~ 9150141 (-)
G2250247 NA other upstream 2025558 9952317 ~ 9952703 (-)

Expression


Co-expression Network