LOC110504517 (LOC106604175)


Basic Information

Item Value
gene id LOC110504517
gene name LOC106604175
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8249532 ~ 8264238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970233.1
TCTAGAGGTTTACATAGATGCTTGGAAAGTACATTTGTTTTACTTTGTTTCTACCCCGCGTGTCTGTATCGACTTTCAATTCCAGACCATTAAGATTTCTGCTCACAAGTGACTGACTGGTGACAGTGACAAAAGAAGAGGTATATTAAGAGCATCCAGAAATGAATTGTTTTCATTTAGATGACTTCCTTGCAGGGTGGATTGGAGGAGCTTCCAGTGTTATTGTGGGTCATCCTCTGGACACAGTCAAGACTCGTTTACAAGCTGGGAAAGGATACAAGAACACCCTTCACTGTGTCCTCCAAATCTACAGAAAGGAAACGATTGCTGGCTTCTTCAAGGGTCTCTCCTTCCCACTGGCCAGCATCACTGTGTATAACTCAGTGGTGTTTGGATTCTTCAACAACACACAGAGGGTTATAAGCAAGTTCCGCCATGGTGACGAGAGACAGTCGTGTGGTATGCTGGACATGACCCTGGCCAGCATGTTGACAGGGCTGATGTCAGTGGGACTCGGAGCTCCGGTCGACTTAGTTAAGATCAGACTGCAGATGCAGACTCTGCCCTGTCTAGCAGAGAACCTGTCCCTCGCCGGGACGACCGGAAACGTGAACGGTAACATCGCCGTGCGCTCCGTGACTCTCCAGGGCCAGCCGACCTACAGAGGGCCCATCCACTGCATCAGCTCCATACTGCGGACTGAGGGGGTCCGGGGGCTTTACAGAGGAGCCGGGGCCATGGTCCTGAGAGACGTCCCTGGGTACACGCTGTACTTCATCCCCTACGCGTTGTTCCGTCGCTGGCTATCCCCTGAAGGGAGGTCATCACCTCATCCCTGTACTGTATGGGTGTCTGGAGGACTGGCAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTGAAGAGCAGACTACAGGCTGACGCTCTACACGCTAGGAAATACAGAGGGATTGTCCACTGCGTCGTTCAGAGCTACAAGACCGAGGGGATACATgtcttcTTCCGCGGAGCCTCCGTGAACGCTATCCGAGGCTTTCCAATGAGCGCCACCATGTTTCTGGGCTACGAACTCTCTCTGCAGTTCTTCAGGGGTCTCTAGTATCTACACAAGGATTATAATGAGACATTATTATCTTGACAGTTATCCTCTTGTCCTAGGACACTCCAAATGGTTTCCTCAGGAAGATCATTTGAATCCTTGCAGAATGAAAGTAGGGAGTGTCTTGACTTGAGAATTGTTCTAGTTGAGAATTATCTGCGCTACTGCCATAATACAATCTATTTATAAAGTGTAAATACTAATTTCTTATATTAAGAAAATATCTTAAATTAAAGTGGCTTACATTAATTGAcaaatgtatacatttaaatATGTTGtgctataatatacagtaacagtatgCTTAATATATAGCTGTACTGCATAAATTAACTAGTTTTAGGACCCAACAGTTAACCAGTTCTAACCTCCATAATGATACGCACATGAATCATTATATTTTGTTGGTGCCAGGCTTTTAATTAAATTGTTTAAACTTTGTGATTTGTAAATAAGTATGAGAGAAATTAAATGTCATTCCACAAGGAGGCATAGTTTTGTACATTAATTTTTTCTTAAAAGTTATTTTAAATGTGgggtttttggggggggggaattcttGTTACGGACTGTTTCTGTACACGTTTACTTGGAAAATCTAATAAACACATTGTTTCAATTGAAA
>XM_036970234.1
TCTAGAGGTTTACATAGATGCTTGGAAAGTACATTTGTTTTACTTTGTTTCTACCCCGCGTGTCTGTATCGACTTTCAATTCCAGACCATTAAGATTTCTGCTCACAAGTGACTGACTGGTGACAGTGACAAAAGAAGAGGTATATTAAGAGCATCCAGAAATGAATTGTTTTCATTTAGATGACTTCCTTGCAGGGTGGATTGGAGGAGCTTCCAGTGTTATTGTGGGTCATCCTCTGGACACAGTCAAGACTCGTTTACAAGCTGGGAAAGGATACAAGAACACCCTTCACTGTGTCCTCCAAATCTACAGAAAGGAAACGATTGCTGGCTTCTTCAAGGGTCTCTCCTTCCCACTGGCCAGCATCACTGTGTATAACTCAGTGGTGTTTGGATTCTTCAACAACACACAGAGGGTTATAAGCAAGTTCCGCCATGGTGACGAGAGACAGTCGTGTGGTATGCTGGACATGACCCTGGCCAGCATGTTGACAGGGCTGATGTCAGTGGGACTCGGAGCTCCGGTCGACTTAGTTAAGATCAGACTGCAGATGCAGACTCTGCCCTGTCTAGCAGAGAACCTGTCCCTCGCCGGGACGACCGGAAACGTGAACGGTAACATCGCCGTGCGCTCCGTGACTCTCCAGGGCCAGCCGACCTACAGAGGGCCCATCCACTGCATCAGCTCCATACTGCGGACTGAGGGGGTCCGGGGGCTTTACAGAGGAGCCGGGGCCATGGTCCTGAGAGACGTCCCTGGGTACACGCTGTACTTCATCCCCTACGCGTTGTTCCGTCGCTGGCTATCCCCTGAAGGGAGGTCATCACCTCATCCCTGTACTGTATGGGTGTCTGGAGGACTGGCAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTGAAGAGCAGACTACAGGCTGACGCTCTACACGCTAGGAAATACAGAGGGATTGTCCACTGCGTCGTTCAGAGCTACAAGACCGAGGGGATACATgtcttcTTCCGCGGAGCCTCCGTGAACGCTATCCGAGGCTTTCCAATGAGCGCCACCATGTTTCTGGGCTACGAACTCTCTCTGCAGTTCTTCAGGGGTCTCTAGTATCTACACAAGGATTATAATGAGACATTATTATCTTGACAGTTATCCTCTTGTCCTAGGACACTCCAAATGGTTTCCTCAGGAAGATCATTTGAATCCTTGCAGAATGAAAGTAGGGAGTGTCTTGACTTGAGAATTGTTCTAGTTGAGAATTATCTGCGCTACTGCCATAATACAATCTATTTATAAAGTGTAAATACTAATTTCTTATATTAAGAAAATATCTTAAATTAAAGTGGCTTACATTAATTGAcaaatgtatacatttaaatATGTTGtgctataatatacagtaacagtatgCTTAATATATAGCTGTACTGCATAAATTAACTAGTTTTAGGACCCAACAGTTAACCAGTTCTAACCTCCATAATGATACGCACATGAATCATTATATTTTGTTGGTGCCAGGCTTTTAATTAAATTGTTTAAACTTTGTGATTTGTAAATAAGTATGAGAGAAATTAAATGTCATTCCACAAGGAGGCATAGTTTTGTACATTAATTTTTTCTTAAAAGTTATTTTAAATGTGgggtttttggggggggggaattcttGTTACGGACTGTTTCTGTACACGTTTACTTGGAAAATCTAATAAACACATTGTTTCAATTGAAA
>XM_036970235.1
TCTAGAGGTTTACATAGATGCTTGGAAAGTACATTTGTTTTACTTTGTTTCTACCCCGCGTGTCTGTATCGACTTTCAATTCCAGACCATTAAGATTTCTGCTCACAAGTGACTGACTGGTGACAGTGACAAAAGAAGAGGTATATTAAGAGCATCCAGAAATGAATTGTTTTCATTTAGATGACTTCCTTGCAGGGTGGATTGGAGGAGCTTCCAGTGTTATTGTGGGTCATCCTCTGGACACAGTCAAGACTCGTTTACAAGCTGGGAAAGGATACAAGAACACCCTTCACTGTGTCCTCCAAATCTACAGAAAGGAAACGATTGCTGGCTTCTTCAAGGGTCTCTCCTTCCCACTGGCCAGCATCACTGTGTATAACTCAGTGGTGTTTGGATTCTTCAACAACACACAGAGGGTTATAAGCAAGTTCCGCCATGGTGACGAGAGACAGTCGTGTGGTATGCTGGACATGACCCTGGCCAGCATGTTGACAGGGCTGATGTCAGTGGGACTCGGAGCTCCGGTCGACTTAGTTAAGATCAGACTGCAGATGCAGACTCTGCCCTGTCTAGCAGAGAACCTGTCCCTCGCCGGGACGACCGGAAACGTGAACGGTAACATCGCCGTGCGCTCCGTGACTCTCCAGGGCCAGCCGACCTACAGAGGGCCCATCCACTGCATCAGCTCCATACTGCGGACTGAGGGGGTCCGGGGGCTTTACAGAGGAGCCGGGGCCATGGTCCTGAGAGACGTCCCTGGGTACACGCTGTACTTCATCCCCTACGCGTTGTTCCGTCGCTGGCTATCCCCTGAAGGGAGGTCATCACCTCATCCCTGTACTGTATGGGTGTCTGGAGGACTGGCAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTGAAGAGCAGACTACAGGCTGACGCTCTACACGCTAGGAAATACAGAGGGATTGTCCACTGCGTCGTTCAGAGCTACAAGACCGAGGGGATACATgtcttcTTCCGCGGAGCCTCCGTGAACGCTATCCGAGGCTTTCCAATGAGCGCCACCATGTTTCTGGGCTACGAACTCTCTCTGCAGTTCTTCAGGGGTCTCTAGTATCTACACAAGGATTATAATGAGACATTATTATCTTGACAGTTATCCTCTTGTCCTAGGACACTCCAAATGGTTTCCTCAGGAAGATCATTTGAATCCTTGCAGAATGAAAGTAGGGAGTGTCTTGACTTGAGAATTGTTCTAGTTGAGAATTATCTGCGCTACTGCCATAATACAATCTATTTATAAAGTGTAAATACTAATTTCTTATATTAAGAAAATATCTTAAATTAAAGTGGCTTACATTAATTGAcaaatgtatacatttaaatATGTTGtgctataatatacagtaacagtatgCTTAATATATAGCTGTACTGCATAAATTAACTAGTTTTAGGACCCAACAGTTAACCAGTTCTAACCTCCATAATGATACGCACATGAATCATTATATTTTGTTGGTGCCAGGCTTTTAATTAAATTGTTTAAACTTTGTGATTTGTAAATAAGTATGAGAGAAATTAAATGTCATTCCACAAGGAGGCATAGTTTTGTACATTAATTTTTTCTTAAAAGTTATTTTAAATGTGgggtttttggggggggggaattcttGTTACGGACTGTTTCTGTACACGTTTACTTGGAAAATCTAATAAACACATTGTTTCAATTGAAA
>XM_036970236.1
TCTAGAGGTTTACATAGATGCTTGGAAAGTACATTTGTTTTACTTTGTTTCTACCCCGCGTGTCTGTATCGACTTTCAATTCCAGACCATTAAGATTTCTGCTCACAAGTGACTGACTGGTGACAGTGACAAAAGAAGAGGTATATTAAGAGCATCCAGAAATGAATTGTTTTCATTTAGATGACTTCCTTGCAGGGTGGATTGGAGACTCGTTTACAAGCTGGGAAAGGATACAAGAACACCCTTCACTGTGTCCTCCAAATCTACAGAAAGGAAACGATTGCTGGCTTCTTCAAGGGTCTCTCCTTCCCACTGGCCAGCATCACTGTGTATAACTCAGTGGTGTTTGGATTCTTCAACAACACACAGAGGGTTATAAGCAAGTTCCGCCATGGTGACGAGAGACAGTCGTGTGGTATGCTGGACATGACCCTGGCCAGCATGTTGACAGGGCTGATGTCAGTGGGACTCGGAGCTCCGGTCGACTTAGTTAAGATCAGACTGCAGATGCAGACTCTGCCCTGTCTAGCAGAGAACCTGTCCCTCGCCGGGACGACCGGAAACGTGAACGGTAACATCGCCGTGCGCTCCGTGACTCTCCAGGGCCAGCCGACCTACAGAGGGCCCATCCACTGCATCAGCTCCATACTGCGGACTGAGGGGGTCCGGGGGCTTTACAGAGGAGCCGGGGCCATGGTCCTGAGAGACGTCCCTGGGTACACGCTGTACTTCATCCCCTACGCGTTGTTCCGTCGCTGGCTATCCCCTGAAGGGAGGTCATCACCTCATCCCTGTACTGTATGGGTGTCTGGAGGACTGGCAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGTTTCTGTCCACAGGTTCTACTCCAGCTGACGTGTTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTACTCCAGCTGACGTGGTTCTGTCTACAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTGAAGAGCAGACTACAGGCTGACGCTCTACACGCTAGGAAATACAGAGGGATTGTCCACTGCGTCGTTCAGAGCTACAAGACCGAGGGGATACATgtcttcTTCCGCGGAGCCTCCGTGAACGCTATCCGAGGCTTTCCAATGAGCGCCACCATGTTTCTGGGCTACGAACTCTCTCTGCAGTTCTTCAGGGGTCTCTAGTATCTACACAAGGATTATAATGAGACATTATTATCTTGACAGTTATCCTCTTGTCCTAGGACACTCCAAATGGTTTCCTCAGGAAGATCATTTGAATCCTTGCAGAATGAAAGTAGGGAGTGTCTTGACTTGAGAATTGTTCTAGTTGAGAATTATCTGCGCTACTGCCATAATACAATCTATTTATAAAGTGTAAATACTAATTTCTTATATTAAGAAAATATCTTAAATTAAAGTGGCTTACATTAATTGAcaaatgtatacatttaaatATGTTGtgctataatatacagtaacagtatgCTTAATATATAGCTGTACTGCATAAATTAACTAGTTTTAGGACCCAACAGTTAACCAGTTCTAACCTCCATAATGATACGCACATGAATCATTATATTTTGTTGGTGCCAGGCTTTTAATTAAATTGTTTAAACTTTGTGATTTGTAAATAAGTATGAGAGAAATTAAATGTCATTCCACAAGGAGGCATAGTTTTGTACATTAATTTTTTCTTAAAAGTTATTTTAAATGTGgggtttttggggggggggaattcttGTTACGGACTGTTTCTGTACACGTTTACTTGGAAAATCTAATAAACACATTGTTTCAATTGAAA
>XM_036970237.1
TCTAGAGGTTTACATAGATGCTTGGAAAGTACATTTGTTTTACTTTGTTTCTACCCCGCGTGTCTGTATCGACTTTCAATTCCAGACCATTAAGATTTCTGCTCACAAGTGACTGACTGGTGACAGTGACAAAAGAAGAGGTATATTAAGAGCATCCAGAAATGAATTGTTTTCATTTAGATGACTTCCTTGCAGGGTGGATTGGAGGAGCTTCCAGTGTTATTGTGGGTCATCCTCTGGACACAGTCAAGACTCGTTTACAAGCTGGGAAAGGATACAAGAACACCCTTCACTGTGTCCTCCAAATCTACAGAAAGGAAACGATTGCTGGCTTCTTCAAGGGTCTCTCCTTCCCACTGGCCAGCATCACTGTGTATAACTCAGTGGTGTTTGGATTCTTCAACAACACACAGAGGGTTATAAGCAAGTTCCGCCATGGTGACGAGAGACAGTCGTGTGGTATGCTGGACATGACCCTGGCCAGCATGTTGACAGGGCTGATGTCAGTGGGACTCGGAGCTCCGGTCGACTTAGTTAAGATCAGACTGCAGATGCAGACTCTGCCCTGTCTAGCAGAGAACCTGTCCCTCGCCGGGACGACCGGAAACGTGAACGGTAACATCGCCGTGCGCTCCGTGACTCTCCAGGGCCAGCCGACCTACAGAGGGCCCATCCACTGCATCAGCTCCATACTGCGGACTGAGGGGGTCCGGGGGCTTTACAGAGGAGCCGGGGCCATGGTCCTGAGAGACGTCCCTGGGTACACGCTGTACTTCATCCCCTACGCGTTGTTCCGTCGCTGGCTATCCCCTGAAGGGAGGTCATCACCTCATCCCTGTACTGTATGGGTGTCTGGAGGACTGGCAGGTTCTATCTCGTGGGTCACGGCTACTCCAGCTGACGTGGTGAAGAGCAGACTACAGGCTGACGCTCTACACGCTAGGAAATACAGAGGGATTGTCCACTGCGTCGTTCAGAGCTACAAGACCGAGGGGATACATgtcttcTTCCGCGGAGCCTCCGTGAACGCTATCCGAGGCTTTCCAATGAGCGCCACCATGTTTCTGGGCTACGAACTCTCTCTGCAGTTCTTCAGGGGTCTCTAGTATCTACACAAGGATTATAATGAGACATTATTATCTTGACAGTTATCCTCTTGTCCTAGGACACTCCAAATGGTTTCCTCAGGAAGATCATTTGAATCCTTGCAGAATGAAAGTAGGGAGTGTCTTGACTTGAGAATTGTTCTAGTTGAGAATTATCTGCGCTACTGCCATAATACAATCTATTTATAAAGTGTAAATACTAATTTCTTATATTAAGAAAATATCTTAAATTAAAGTGGCTTACATTAATTGAcaaatgtatacatttaaatATGTTGtgctataatatacagtaacagtatgCTTAATATATAGCTGTACTGCATAAATTAACTAGTTTTAGGACCCAACAGTTAACCAGTTCTAACCTCCATAATGATACGCACATGAATCATTATATTTTGTTGGTGCCAGGCTTTTAATTAAATTGTTTAAACTTTGTGATTTGTAAATAAGTATGAGAGAAATTAAATGTCATTCCACAAGGAGGCATAGTTTTGTACATTAATTTTTTCTTAAAAGTTATTTTAAATGTGgggtttttggggggggggaattcttGTTACGGACTGTTTCTGTACACGTTTACTTGGAAAATCTAATAAACACATTGTTTCAATTGAAA

Function

NR:

description
solute carrier family 25 member 48-like isoform X1

GO: NA

KEGG:

id description
K15123 SLC25A45_47; solute carrier family 25, member 45/47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970233.1 False 2079 mRNA 0.46 7 8249532 8264238
XM_036970234.1 False 2046 mRNA 0.46 7 8249532 8264238
XM_036970235.1 False 2046 mRNA 0.46 8 8249532 8264238
XM_036970236.1 False 2035 mRNA 0.46 6 8249532 8264238
XM_036970237.1 True 1731 mRNA 0.44 7 8249532 8264238

Neighbor

gene id symbol gene type direction distance location
LOC110504516 LOC106612282 coding downstream 24980 8173221 ~ 8224552 (-)
LOC110504508 LOC106612286 coding downstream 144787 8091034 ~ 8104745 (-)
LOC110504485 tgfbi coding downstream 322773 7896711 ~ 7926759 (-)
LOC110504484 smad5 coding downstream 357354 7871894 ~ 7892178 (-)
LOC110504356 LOC106612292 coding downstream 378433 7858125 ~ 7871099 (-)
LOC110504538 g3bp1 coding upstream 352726 8616964 ~ 8627201 (-)
sparc sparc coding upstream 373350 8637588 ~ 8656945 (-)
LOC110504555 atox1 coding upstream 414513 8678751 ~ 8681239 (-)
mtnr1al LOC106612252 coding upstream 486098 8750336 ~ 8755486 (-)
LOC118945975 NA coding upstream 514699 8778937 ~ 8780302 (-)
G2248741 NA non-coding downstream 3512 8245351 ~ 8246020 (-)
G2248738 NA non-coding downstream 9103 8240152 ~ 8240429 (-)
G2248732 NA non-coding downstream 36447 8207554 ~ 8213085 (-)
G2248717 NA non-coding downstream 77253 8167784 ~ 8172279 (-)
G2248748 NA non-coding upstream 13821 8278059 ~ 8278379 (-)
G2248749 NA non-coding upstream 14231 8278469 ~ 8279171 (-)
G2248750 NA non-coding upstream 16211 8280449 ~ 8280657 (-)
G2248756 NA non-coding upstream 35610 8299848 ~ 8300182 (-)
G2248757 NA non-coding upstream 36941 8301179 ~ 8301467 (-)
G2248668 LOC106612284 other downstream 91999 8153911 ~ 8157963 (-)
G2248522 NA other downstream 208052 8040876 ~ 8041480 (-)
G2247813 NA other downstream 993592 7255344 ~ 7255940 (-)
G2247565 NA other downstream 1224993 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1378432 6870587 ~ 6871100 (-)
c1qtnf2 c1qtnf2 other upstream 882553 9145591 ~ 9148916 (-)
G2249506 NA other upstream 885650 9149888 ~ 9150141 (-)
G2250247 NA other upstream 1688079 9952317 ~ 9952703 (-)
G2250775 NA other upstream 2261553 10525791 ~ 10526568 (-)
G2251534 NA other upstream 2432954 10697192 ~ 10698407 (-)

Expression


Co-expression Network