sparc (sparc)


Basic Information

Item Value
gene id sparc
gene name sparc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8637588 ~ 8656945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124702.1
GTTAGATAGTCTTAGTCCTCTCTGACAGCTGACTTCTCCTTTGGCTTTTCTGCTTGTTGGTGTTCTGAAGaCTGAACGATGAGGGTGTGGATTGTCTTCCTCCTGTGCCTAGCTGGTCAGGCATTCACCGCTTCCATTACTGAGGAGGAGCCCATCATTGATGACGTCGGTGAGGAGGCACAGCCAGAGGTGGGGGTCAACCCGGTGCAGGTAGAGACTGGAGACTTCGACGAGGCCATCGAtgtcgaggaggaggaggaggaggtcaccGCTGAGAGCCCCTGCTTGAACCACCACTGCAAGAAGGGAAAGGTGTGTGAGGTGGATGAGGAGAACACCCCCATGTGTGTCTGCCAGGACCCAACTACCTGCCCTGGCGCCGTTGGAGAGTTTGAGCATGTCTGCGCCACCGACAACACAACCTACGACTCTTCCTGCCACTTCTTTGCCCAGAAGTGCAGTCTGGAGGGAACCAAGAAGGGCCACAAACTGCACCTGGACTACATCGGGCCATGCAAATTCATCGAGGCCTGCATGGATGCTGAGCTGAATGAGTTCCCCCTGCGTATGAGGGACTGGCTGAAAAACGTTCTGGTCACCCTGTACGAGCGCGATGAGGAGAACAACCTGCTGACTGAGAAGCAGAAGCTCAGAGTGAGGAAGATCTATGAGAATGAGAAGAGACTGCAGGCTGGAGAGCACTCCCTGGACCTGCTGGCCCACGACTTTGAgaagaactacaacatgtacatTTTCCCCGTCCACTGGCAGTTCGGTCAGCTGGACCAGCACCCCGTCGATGGGTTCCTGTCCCACACAGAGCTGGCCCCCCTGCGCGCCCCTCTCATCCCCATGGAACACTGCACCACTCGTTTCTTCGAGCAGTGTGACGCTGACAATGACAAGTACATCGccctggaggagtgggccaactGCTTCAGCATCAAGGAGCagGACGTCGACCAGGACCTTGTCATCTAAGCTCATCAGCTGACCTACAGTATGAAAACGAGTCTCTATCGGGACGAGGTGCTCACCTGATCCCTAAATTAGAGGAACACAGTAACGGTGCTAACTACAACTAATTAACGACCAACCGACACCACTAAAATTGCTGAAAAAGACATATGCACAGTCTGAACTAACAAATCACAAAACGTGATCAtgatacaactttttttttttcttgttttctgcaaataaagaaaatcctttTTAACCAGATAGATTAGAGGAGGTAACAGAAAGATGCTTTTTGGCGGGAGAAAGATGTAAATGGTTGTTGAATGGGTTGTGATAATGGTTGTTCACAACATGTATATTGTGTTCACGTGATCAGGGCTTGGGTTTAATAACGTCAAATAGAACATTCTTTGGAGGATACAAGTTTTgtaaaaatctttaaaaaaaataaagtttctAAAT

Function

symbol description
sparc Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Acts upstream of or within several processes, including erythrocyte differentiation; inner ear morphogenesis; and pharyngeal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cranium; hematopoietic system; pectoral fin; pectoral fin bud; and vestibuloauditory system. Human ortholog(s) of this gene implicated in cervix carcinoma; endometrial carcinoma; and osteogenesis imperfecta type 17. Orthologous to human SPARC (secreted protein acidic and cysteine rich).

NR:

description
SPARC precursor

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005615 extracellular space cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24262 SPARC; secreted protein acidic and rich in cysteine

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124702.1 True 1425 mRNA 0.50 10 8637588 8656945

Neighbor

gene id symbol gene type direction distance location
LOC110504538 g3bp1 coding downstream 10387 8616964 ~ 8627201 (-)
LOC110504517 LOC106604175 coding downstream 373350 8249532 ~ 8264238 (-)
LOC110504516 LOC106612282 coding downstream 413036 8173221 ~ 8224552 (-)
LOC110504508 LOC106612286 coding downstream 532843 8091034 ~ 8104745 (-)
LOC110504485 tgfbi coding downstream 710829 7896711 ~ 7926759 (-)
LOC110504555 atox1 coding upstream 21806 8678751 ~ 8681239 (-)
mtnr1al LOC106612252 coding upstream 93391 8750336 ~ 8755486 (-)
LOC118945975 NA coding upstream 121992 8778937 ~ 8780302 (-)
LOC110504535 fat2 coding upstream 123555 8780500 ~ 8859214 (-)
LOC110504521 LOC106612236 coding upstream 392875 9049820 ~ 9071114 (-)
G2249161 NA non-coding downstream 60475 8576783 ~ 8577113 (-)
G2249144 NA non-coding downstream 98327 8537647 ~ 8539261 (-)
G2248886 NA non-coding downstream 148478 8488893 ~ 8489110 (-)
G2248865 NA non-coding downstream 170162 8462413 ~ 8467426 (-)
G2248864 NA non-coding downstream 175664 8461484 ~ 8461924 (-)
G2249199 NA non-coding upstream 2681 8659626 ~ 8659886 (-)
G2249201 NA non-coding upstream 7009 8663954 ~ 8664177 (-)
G2249234 LOC107687231 non-coding upstream 71569 8728514 ~ 8729135 (-)
G2249241 NA non-coding upstream 86120 8743065 ~ 8745726 (-)
G2248668 LOC106612284 other downstream 480055 8153911 ~ 8157963 (-)
G2248522 NA other downstream 596108 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1381648 7255344 ~ 7255940 (-)
G2247565 NA other downstream 1613049 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1766488 6870587 ~ 6871100 (-)
c1qtnf2 c1qtnf2 other upstream 489846 9145591 ~ 9148916 (-)
G2249506 NA other upstream 492943 9149888 ~ 9150141 (-)
G2250247 NA other upstream 1295372 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1868846 10525791 ~ 10526568 (-)
G2251534 NA other upstream 2040247 10697192 ~ 10698407 (-)

Expression


Co-expression Network