LOC110504555 (atox1)


Basic Information

Item Value
gene id LOC110504555
gene name atox1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8678751 ~ 8681239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041145.1
ATATCTAGCAACATGTCGATGGTCCCTAACTTTGATGTACTTTAGCTAGCAAGCAAGACAAGGCAGCAACATATTCAGCAGCTAGTTAGTCGTGTAAGCTTTGAAAGAGGAGAAAGTCCATTGATCTTGCGCTCTACCTCAACATGACGACCAAGCAGGAATTCTTTGTGGACATGACATGTGAGGGATGCTCTGGTGCAGTTACCCGAGTCCTCAATAAACTGGGTGGTGTCCAATTTGAGATCGACCTCCCCAACAAGAAGGTTTTCATTGAGTCTGACAAGGACACGGACGTGCTTCTGGAAACACTTAAGAAGACTGGAAAGGAGGCTAACTACATCGGCCCCAAGTGAAGaatcctcctctttcctcttatAGACCAGCTGTTGGGTTGGTGATTATCTGAAGGATGACTATGAGAAGAAAGAACCCTCTGACTGCAGAACAGTCTTGCTGTTATGTCTTCATGGATCACTGTAAAGAGTCCACGCTGCCAAGCTGTCCACTTTTGTTATTTAAACACTATTAtttatgcatcccaaatggcaccctatggacCCCAGTCCAAAGTAAGGCACTATTATACGGAATAGAGTACTGTTTGGGACGCATCCACTATGAAAATCCAGTACGATTGCTGACAAAATTAAATAGATCATGTACCTCTATGGGTAAATGTTAGGCCTACTGCAGGTAAATTAGATTATgggggggaatcatcCTGTATTAAGGTTTCCTTTCATCTCTGAATATTGTTCATGTTCACCCATATGTAAAATTAAAAAGTTGATTCTA
>XR_005041146.1
TCGATGGTCCCTAACTTTGATGTACTTTAGCTAGCAAGCAAGACAAGGCAGCAACATATTCAGCAGCTAGTTAGTCGTGTAAGCTTTGAAAGAGGAGAAAGTCCATTGATCTTGCGCTCTACCTCAACATGACGACCAAGCAGGAATTCTTTGTGGACATGACATGTGAGGGATGCTCTGGTGCAGTTACCCGAGTCCTCAATAAACTGGGTGGTGTCCAATTTGAGATCGACCTCCCCAACAAGAAGGTTTTCATTGAGTCTGACAAGGACACGGACGTGCTTCTGGAAACACTTAAGAAGACTGGAAAGGAGGCTAACTACATCGGCCCCAAGTGAAGaatcctcctctttcctcttatAGACCAGCTGTTGGGTTGGTGATTATCTGAAGGATGACTATGAGAAGAAAGAACCCTCTGACTGCAGAACAGTCTTGCTGTTATGTCTTCATGGATCACTGTAAAGAGTCCACGCTGCCAAGCTGTCCACTTTTGTTATTTAAACACTATTAtttatgcatcccaaatggcaccctatggacCCCAGTCCAAAGTAAGGCACTATTATACGGAATAGAGTACTGTTTGGGACGCATCCACTATGAAAATCCAGTACGATTGCTGACAAAAT
>XM_036969761.1
ATATCTAGCAACATGTCGATGGTCCCTAACTTTGATGTACTTTAGCTAGCAAGCAAGACAAGGCAGCAACATATTCAGCAGCTAGTTAGTCGTGTAAGCTTTGAAAGAGGAGAAAGTCCATTGATCTTGCGCTCTACCTCAACATGACGACCAAGCAGGAATTCTTTGTGGACATGACATGTGAGGGATGCTCTGGTGCAGTTACCCGAGTCCTCAATAAACTGGGTGGTGTCCAATTTGAGATCGACCTCCCCAACAAGAAGGTTTTCATTGAGTCTGACAAGGACACGGACGTGCTTCTGGAAACACTTAAGAAGACTGGAAAGGAGGCTAACTACATCGGCCCCAAGTGAAGaatcctcctctttcctcttatAGACCAGGTGAACTCTCACGGTCTAAATATATATGAAGTGACAATCAATTCAATATCGACAACTTCCCCCTCCATCCCAACATGTCGTTCCTCTTCTCACCATTTGCAACCTgttttgtttctgtgtgttagCTGTTGGGTTGGTGATTATCTGAAGGATGACTATGAGAAGAAAGAACCCTCTGACTGCAGAACAGTCTTGCTGTTATGTCTTCATGGATCACTGTAAAGAGTCCACGCTGCCAAGCTGTCCACTTTTGTTATTTAAACACTATTAtttatgcatcccaaatggcaccctatggacCCCAGTCCAAAGTAAGGCACTATTATACGGAATAGAGTACTGTTTGGGACGCATCCACTATGAAAATCCAGTACGATTGCTGACAAAAT
>TU2572273
AAGCAAGACAAGGCAGCAACATATTCAGCAGCTAGTTAGTCGTGTAAGCTTTGAAAGAGGAGAAAGTCCATTGATCTTGCGCTCTACCTCAACATGACGACCAAGCAGGAATTCTTTGTGGACATGACATGTGAGGGATGCTCTGGTGCAGTTACCCGAGTCCTCAATAAACTGGGTGGTGTCCAATTTGAGATCGACCTCCCCAACAAGAAGGTTTTCATTGAGTCTGACAAGGACACGGACGTGCTTCTGGAAACACTTAAGAAGACTGGAAAGGAGGCTAACTACATCGGCCCCAAGTGAAGaatcctcctctttcctcttatAGACCAGCTGTTGGGTTGGTGATTATCTGAAGGATGACTATGAGAAGAAAGAACCCTCTGACTGCAGAACAGTCTTGCTGTTATGTCTTCATGGATCACTGTAAAGAGTCCACGCTGCCAAGCTGTCCACTTTTGTTATTTAAACACTATTAtttatgcatcccaaatggcaccctatggacCCCAGTCCAAAGTAAGGCACTATTATACGGAATAGAGTACTGTTTGGGACGCATCCACTATGAAAATCCAGTACGATTGCTGACAAAATTAAATAGATCATGTACCTCTATGGGTAAATGTTAGGCCTACTGCAGGTAAATTAGATTATGTGAAATTGAAGTCAGTTTTGTCTTAATGAAGCAGCTATTGTAATTCACGTTGATTTGGacagttt
>TU2572274
AAGCAAGACAAGGCAGCAACATATTCAGCAGCTAGTTAGTCGTGTAAGCTTTGAAAGAGGAGAAAGTCCATTGATCTTGCGCTCTACCTCAACATGACGACCAAGCAGGAATTCTTTGTGGACATGACATGTGAGGGATGCTCTGGTGCAGTTACCCGAGTCCTCAATAAACTGGGTGGTGTCCAATTTGAGATCGACCTCCCCAACAAGAAGGTTTTCATTGAGTCTGACAAGGACACGGACGTGCTTCTGGAAACACTTAAGAAGACTGGAAAGGAGGCTAACTACATCGGCCCCAAGTGAAGaatcctcctctttcctcttatAGACCAGGTGAACTCTCACGGTCTAAATATATATGAAGTGACAATCAATTCAATATCGACAACTTCCCCCTCCATCCCAACATGTCGTTCCTCTTCTCACCATTTGCAACCTgttttgtttctgtgtgttagCTGTTGGGTTGGTGATTATCTGAAGGATGACTATGAGAAGAAAGAACCCTCTGACTGCAGAACAGTCTTGCTGTTATGTCTTCATGGATCACTGTAAAGAGTCCACGCTGCCAAGCTGTCCACTTTTGTTATTTAAACACTATTAtttatgcatcccaaatggcaccctatggacCCCAGTCCAAAGTAAGGCACTATTATACGGAATAGAGTACTGTTTGGGACGCATCCACTATGAAAATCCAGTACGATTGCTGACAAAATTAAATAGATCATGTACCTCTATGGGTAAATGTTAGGCCTACTGCAGGTAAATTAGATTATGTGAAATTGAAGTCAGTTTTGTCTTAATGAAGCAGCTATTGTAATTCACGTTGATTTGGacagttt

Function

symbol description
atox1 Predicted to enable copper chaperone activity. Predicted to be involved in cellular copper ion homeostasis and response to oxidative stress. Predicted to act upstream of or within metal ion transport. Predicted to be active in cytosol. Orthologous to human ATOX1 (antioxidant 1 copper chaperone).

NR:

description
copper transport protein ATOX1-like

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041145.1 False 795 mRNA 0.42 5 8678751 8681239
XR_005041146.1 False 632 mRNA 0.45 4 8678983 8681224
XM_036969761.1 False 772 mRNA 0.44 3 8678983 8681239
TU2572273 False 723 lncRNA 0.43 4 8678857 8681189
TU2572274 True 848 lncRNA 0.42 3 8678857 8681189

Neighbor

gene id symbol gene type direction distance location
sparc sparc coding downstream 21806 8637588 ~ 8656945 (-)
LOC110504538 g3bp1 coding downstream 51550 8616964 ~ 8627201 (-)
LOC110504517 LOC106604175 coding downstream 414513 8249532 ~ 8264238 (-)
LOC110504516 LOC106612282 coding downstream 454199 8173221 ~ 8224552 (-)
LOC110504508 LOC106612286 coding downstream 574006 8091034 ~ 8104745 (-)
mtnr1al LOC106612252 coding upstream 69097 8750336 ~ 8755486 (-)
LOC118945975 NA coding upstream 97698 8778937 ~ 8780302 (-)
LOC110504535 fat2 coding upstream 99261 8780500 ~ 8859214 (-)
LOC110504521 LOC106612236 coding upstream 368581 9049820 ~ 9071114 (-)
LOC110504523 LOC106612238 coding upstream 398923 9080162 ~ 9085964 (-)
G2249201 NA non-coding downstream 14574 8663954 ~ 8664177 (-)
G2249199 NA non-coding downstream 18865 8659626 ~ 8659886 (-)
G2249161 NA non-coding downstream 101638 8576783 ~ 8577113 (-)
G2249144 NA non-coding downstream 139490 8537647 ~ 8539261 (-)
G2248886 NA non-coding downstream 189641 8488893 ~ 8489110 (-)
G2249234 LOC107687231 non-coding upstream 47275 8728514 ~ 8729135 (-)
G2249241 NA non-coding upstream 61826 8743065 ~ 8745726 (-)
G2249242 NA non-coding upstream 66745 8747984 ~ 8748305 (-)
G2249249 NA non-coding upstream 82718 8763957 ~ 8764566 (-)
G2249250 NA non-coding upstream 83510 8764749 ~ 8765091 (-)
G2248668 LOC106612284 other downstream 521218 8153911 ~ 8157963 (-)
G2248522 NA other downstream 637271 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1422811 7255344 ~ 7255940 (-)
G2247565 NA other downstream 1654212 6938623 ~ 7024539 (-)
G2247416 NA other downstream 1807651 6870587 ~ 6871100 (-)
c1qtnf2 c1qtnf2 other upstream 465552 9145591 ~ 9148916 (-)
G2249506 NA other upstream 468649 9149888 ~ 9150141 (-)
G2250247 NA other upstream 1271078 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1844552 10525791 ~ 10526568 (-)
G2251534 NA other upstream 2015953 10697192 ~ 10698407 (-)

Expression


Co-expression Network