LOC110504525 (tmed9)


Basic Information

Item Value
gene id LOC110504525
gene name tmed9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 9086106 ~ 9090212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970530.1
CTGCGCAGACTCGAATCACAACATCCGTCCTCTGTAACCGGCTGGAAGATGGTGGCAGTCAAAATGCGGTTTTGTGTGTTGTCAGTTTTGCTTTTGAACGTTTATTACACCTTTGTTTCCTCGCTGTACTTTCACATCGGGGAGACTGAGAAGAAATGCTTCATAGAGGAAATTCCGGATGAAACGATGATCATCGGAAACTATCGTACACAATTGTACGACAAGCAGAAAGAAGAGTACCTACCTGCCACACAGGGTCTGGGGATGTTTGTTGAGGTGAAAGACCCTGATGAGAAGGTGATCCTGTCTCGTCAGTACGGCTCAGAGGGAAGATTCACCTTCACCTCTCACACCCCAGGAGAACATCGGATCTGCCTTCACTCCAACTCTTCCAAGTTTGCCCTCTTCGCTGGAGGAATGCTTAGAGTTCACCTGGACATCCAAGTGGGAGAGCACACCAATAACTATGCAGAGATTGCAGCCAAAGACAAGCTGACAGAGCTGCAGCTGAGAGTGAGACAGCTGGTGGAGCAGGTGGACCAGATCCAGAAGGAGCAGAACTATCAGAGGTACCGCGAGGAGCGCTTCAGGCAGACCAGTGAGAGCACCAACCAGAGGGTTCTGTGGTGGTCCATCGTTCAGACATTGATCCTGGTGGCCATTGGCTTCTGGCAGATGAGACACCTCAAAAGTTTCTTTGAGGCCAAGAAATTAGTGTAAACATGCACTCTCATAGTGTCGTTTCTGAGTCCGGATTGGGGATCAAATCAGTAAATTCGGGAAGTTAACTTACACACTATTCTTGAATTGAAAATTCCCCCATTGTTTTCTGAGGCATTTTTCATGAATCAATTCAATTTGAAAGAACTTCCTGAATTGATATGTGTATTGAACACAACCCTGGTCTGAATGCAGTACTTAAACATTAGTGAGAATGTGTGATATCTCCCAGAAGTATGTGTACAGATGGGTGAGGTTACCGTTCTATCAGTGAAAACCCAGTTACTCTTTATTTTGAAGGGGCTCCGCTTTTGGATTTTTAAGACCCTTTTGTGACTTTGATATTCCCCATCGCTATTTCTGTAAGAACACTGTTTGCAATTGGTTTTTATTTATGATCCTCCACTGTATGCTCTATGTTTTACATTTGGCTGGGGAAAAAATGATATTGTACTATCGATATCAAACATGATTTTGTACTATTGATGATATCAAACATTGGACTGATAATATCAAACATTGTTAAAACAGCTAATGTATTTTTTCACTTCATAagcctccccccccccaccccaacatCCCATAAGATATTTCTGTAGCACTGTTTGTGACTAGAATGCCTGTCGGTCATATTCCAGGCCGCATCTCTTCTCTCAGCATAACAGGTGTGTTTTCAAACTGATTAGACATTGTTCTCACTCTACATGCATTGTAATGGGGGTTTTGTTACTGGCTGAGAGAGAGGGCACCTATTTTGGTTTAGAGCCCTACAACAGAAATGGTGACTTGATTTATGAAACTTATTAATCTTTACGTTTTTATTTAGCATCAAATGAATGTACGTTTCAACCCCTGATGTATTTAGTTGTTGGTCGTGGTCTGTGTGTTTAGAAACAGAAAGACATCTAGAATATGCACAATTTTAAATTGAAGATCTTGAAACTTGGGAACTTTCTCTTGTTAACCGGTATCCGTTTTCGCAAAGCACCTCTGAGTAGATCTGCTGATCTATTATCTGTTATCCCTTGTTATTCATGTTGATTTAAAAGGAGAAaccgatcctagatcagcacttgtACTCTGATGCTTTCTGAATATGGGCTCTGTCTGTTTTTATTTATGAAGTTGGAAAGTGAGATAAGAGACATAACGCTTTGGTTAAAGGTTGGTGCCAGAGTGTCTGATGTTAATATGGTAGTTTCATGGAAAACTTTGACATACTAGCTATGCATTTGCTGAAGTACGAAAGCAGTTCACAACCCTAACTTGCTGAATACACTGCCAAATATGTTCCCTTATCACAATCGACTGGCTTGATAGTGGTCAAGTGAACATTGGTTGTTTTTTCATCTGTACTGCATATCTAAGTGAACCTAGAGAGGTTTTGGTTTGTCCATTTCCTTTCTGCAAATACTCAGGTAGAGTTTTGAAGACACTGATTTAATTCAATTTGATTAAATAAAGAATTGTTGTCCGGGTTAACAGGTTTGCTCCAGTTCTCATCATGTACAAGGAGTGGATTTGTGTGTAAACATCCATTGTAACACTTGAAAAGTACTTAGCCAGAAAGCAGTCATTGCTTCTTGTCACTCAAAACAATTTGAACTACACTGGATCTTTTCAGCAgaaaatatttttgttcaattaatCCGTTTTTTGTTTGTCCTTAATAATTCCCCAAACTGTTCCTTGTTGAATTATTGCGTCAttggtgttttttttgttgcatttatATGGTTAGATACAGTATCAGAGATTTCGAGTATGATTTGAATCAGTTGGTACTGGTTTGTTTTGGGTGGGAGGGTTTTTAATTTTAGATTATGTCGATGTGAAAACTTGATTAAATTTGCACTAAAAAATAAAGTTGTCACCAATG

Function

symbol description
tmed9 Predicted to be involved in Golgi organization; Golgi vesicle transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; ectoderm; fin; hatching gland; and mesoderm. Orthologous to human TMED9 (transmembrane p24 trafficking protein 9).

NR:

description
transmembrane emp24 domain-containing protein 9-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20346 TMED4_9_11; p24 family protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970530.1 True 2599 mRNA 0.40 5 9086106 9090212

Neighbor

gene id symbol gene type direction distance location
LOC110504523 LOC106612238 coding downstream 142 9080162 ~ 9085964 (-)
LOC110504521 LOC106612236 coding downstream 14992 9049820 ~ 9071114 (-)
LOC110504535 fat2 coding downstream 226892 8780500 ~ 8859214 (-)
LOC118945975 NA coding downstream 305804 8778937 ~ 8780302 (-)
mtnr1al LOC106612252 coding downstream 330620 8750336 ~ 8755486 (-)
LOC110504524 LOC106612240 coding upstream 293 9090505 ~ 9100911 (-)
LOC110504527 LOC106612241 coding upstream 16478 9106690 ~ 9145483 (-)
c1qtnf2 c1qtnf2 coding upstream 55379 9145591 ~ 9148916 (-)
LOC110504362 LOC106604211 coding upstream 63020 9153232 ~ 9197578 (-)
LOC110504530 NA coding upstream 107498 9197710 ~ 9200039 (-)
G2249442 NA non-coding downstream 75022 9010640 ~ 9011084 (-)
G2249352 NA non-coding downstream 113275 8969456 ~ 8972831 (-)
G2249348 NA non-coding downstream 121666 8964228 ~ 8964440 (-)
G2249345 NA non-coding downstream 123638 8962213 ~ 8962468 (-)
G2249332 NA non-coding downstream 140062 8945103 ~ 8946044 (-)
G2249486 NA non-coding upstream 12677 9102889 ~ 9103156 (-)
G2249494 NA non-coding upstream 40703 9130915 ~ 9131151 (-)
G2249497 NA non-coding upstream 44072 9134284 ~ 9134550 (-)
G2249507 NA non-coding upstream 60129 9150341 ~ 9151226 (-)
G2249508 NA non-coding upstream 61136 9151348 ~ 9151557 (-)
G2248668 LOC106612284 other downstream 928573 8153911 ~ 8157963 (-)
G2248522 NA other downstream 1044626 8040876 ~ 8041480 (-)
G2247813 NA other downstream 1830166 7255344 ~ 7255940 (-)
G2247565 NA other downstream 2061567 6938623 ~ 7024539 (-)
G2247416 NA other downstream 2215006 6870587 ~ 6871100 (-)
G2249506 NA other upstream 59676 9149888 ~ 9150141 (-)
G2250247 NA other upstream 862105 9952317 ~ 9952703 (-)
G2250775 NA other upstream 1435579 10525791 ~ 10526568 (-)
G2251534 NA other upstream 1606980 10697192 ~ 10698407 (-)

Expression


Co-expression Network